mRNA_P-fluviatile_contig9.15074.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15074.1
Unique NamemRNA_P-fluviatile_contig9.15074.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:708476..709027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size554
Cds size372
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817302.851675-UTR-P-fluviatile_contig9:708475..7086551622817302.851675-UTR-P-fluviatile_contig9:708475..708655Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 708476..708655 +
1693571999.5525355-UTR-P-fluviatile_contig9:708475..7086551693571999.5525355-UTR-P-fluviatile_contig9:708475..708655Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 708476..708655 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817302.8641624-CDS-P-fluviatile_contig9:708655..7090271622817302.8641624-CDS-P-fluviatile_contig9:708655..709027Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 708656..709027 +
1693571999.5620291-CDS-P-fluviatile_contig9:708655..7090271693571999.5620291-CDS-P-fluviatile_contig9:708655..709027Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 708656..709027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15074.1prot_P-fluviatile_contig9.15074.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 708656..709027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15074.1

>prot_P-fluviatile_contig9.15074.1 ID=prot_P-fluviatile_contig9.15074.1|Name=mRNA_P-fluviatile_contig9.15074.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=124bp
MPGKLIGCEANFRSRPSTTPISKLVSGVPPQSPASKLAEASKSGSVVLAV
CHAKVRWDFHKILSCLSLVNLGALFCFSRQTSNPPRQHPRIPRPLDPQAH
APKLGLHYVWPVVSLLCSPAPVNI
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mRNA from alignment at P-fluviatile_contig9:708476..709027+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15074.1 ID=mRNA_P-fluviatile_contig9.15074.1|Name=mRNA_P-fluviatile_contig9.15074.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=552bp|location=Sequence derived from alignment at P-fluviatile_contig9:708476..709027+ (Porterinema fluviatile SAG_2381)
CTCGGAACACGTTGTCCGCGTCCAGGATGCCTGCGCACGACGCCTTCCCT
CCACAAAAAGGTGGTGGTGAAAAGTCGATGCAGTTGTCAACGACACGAGT
AGGTGATTAATATTCGATAAAGCTGTCAACGACGCGACGCTCGTGTACCC
CAACCATCGAGGAGCATGCCCAACAGGTAGATGCCCGGGAAACTCATCGG
TTGCGAGGCAAACTTTCGTTCGCGTCCCTCCACAACCCCTATTTCGAAGC
TTGTGTCAGGCGTTCCTCCACAATCGCCTGCTTCGAAGCTGGCCGAAGCT
TCAAAGAGCGGCAGCGTGGTTCTAGCTGTATGTCACGCAAAAGTGCGATG
GGATTTCCACAAAATTCTATCCTGCCTGTCCCTGGTGAATCTTGGTGCTT
TGTTTTGCTTCAGCCGACAGACTTCCAACCCTCCGCGCCAGCACCCTCGT
ATCCCTCGCCCCCTTGACCCCCAAGCTCATGCACCGAAACTAGGCCTTCA
TTACGTGTGGCCTGTTGTTTCGCTGCTGTGTTCACCTGCCCCTGTGAACA
TA
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Coding sequence (CDS) from alignment at P-fluviatile_contig9:708476..709027+

>mRNA_P-fluviatile_contig9.15074.1 ID=mRNA_P-fluviatile_contig9.15074.1|Name=mRNA_P-fluviatile_contig9.15074.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=744bp|location=Sequence derived from alignment at P-fluviatile_contig9:708476..709027+ (Porterinema fluviatile SAG_2381)
ATGCCCGGGAAACTCATCGGTTGCGAGGCAAACTTTCGTTCGCGTCCCTC
CACAACCCCTATTTCGAAGCTTGTGTCAGGCGTTCCTCCACAATCGCCTG
CTTCGAAGCTGGCCGAAGCTTCAAAGAGCGGCAGCGTGGTTCTAGCTGTA
TGTCACGCAAAAGTGCGATGGGATTTCCACAAAATTCTATCCTGCCTGTC
CCTGGTGAATCTTGGTGCTTTGTTTTGCTTCAGCCGACAGACTTCCAACC
CTCCGCGCCAGCACCCTCGTATCCCTCGCCCCCTTGACCCCCAAGCTCAT
GCACCGAAACTAGGCCTTCATTACGTGTGGCCTGTTGTTTCGCTGCTGTG
TTCACCTGCCCCTGTGAACATAATGCCCGGGAAACTCATCGGTTGCGAGG
CAAACTTTCGTTCGCGTCCCTCCACAACCCCTATTTCGAAGCTTGTGTCA
GGCGTTCCTCCACAATCGCCTGCTTCGAAGCTGGCCGAAGCTTCAAAGAG
CGGCAGCGTGGTTCTAGCTGTATGTCACGCAAAAGTGCGATGGGATTTCC
ACAAAATTCTATCCTGCCTGTCCCTGGTGAATCTTGGTGCTTTGTTTTGC
TTCAGCCGACAGACTTCCAACCCTCCGCGCCAGCACCCTCGTATCCCTCG
CCCCCTTGACCCCCAAGCTCATGCACCGAAACTAGGCCTTCATTACGTGT
GGCCTGTTGTTTCGCTGCTGTGTTCACCTGCCCCTGTGAACATA
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