mRNA_P-fluviatile_contig9.15068.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15068.1
Unique NamemRNA_P-fluviatile_contig9.15068.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig9.15068.1 vs. uniprot
Match: D7FJE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE0_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 1.240e-47
Identity = 106/175 (60.57%), Postives = 119/175 (68.00%), Query Frame = 3 
Query:  744 FATCSGILALTEKRRKRKGMSLARAWSIPHGMPMLRATVVDLSDAVRGRGSASIWRAGGSNVEGASDEDLLEHVGLLEEITDDSIYGALVEQHE--VPVAKLAEDNWVTAMAWR------------------------QRVDVGEQGREVSADDGAAERWRSARAMARQARRANN 1190
            FATCSGILAL EKRRKRKG+SLARAWSIP GMP+LRATV DLSDAVRGR  ASIW A G N     D+DLLEHVGLLEEI +DSIYGALV+Q +  +PVAKLAEDNWVTAMA+                         +R   G +G+E      +  RWRSARA ARQARR N+
Sbjct:   54 FATCSGILALAEKRRKRKGISLARAWSIPQGMPVLRATVTDLSDAVRGR--ASIWSAEGLNGADVGDDDLLEHVGLLEEIPNDSIYGALVQQRDSDIPVAKLAEDNWVTAMAFAGGQPNPDSDPVTYGSTSTTTASTSRREGAGPEGQEEEEHTWSVSRWRSARATARQARRLNS 226
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BLAST of mRNA_P-fluviatile_contig9.15068.1 vs. uniprot
Match: A0A6H5L5L4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L4_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 4.360e-41
Identity = 101/174 (58.05%), Postives = 113/174 (64.94%), Query Frame = 3 
Query:  744 FATCSGILALTEKRRKRKGMSLARAWSIPHGMPMLRATVVDLSDAVRGRGSASIWRAGGSNVEGASDEDLLEHVGLLEEITDDSIYGALVEQHE--VPVAKLAEDNWVTAMAWR--------QRVDVGEQGREVSA----------------DDGAAERWRSARAMARQARRAN 1187
            FATCSGILAL EKRRKRKG+SLARAWSIP GMP+LRATV DLSDAVRGR  ASIWRA G +     D++LLEHVGLLEEI +DSIYGALV+Q +  +PVAKLAEDNW TA+A+           V  G                           +  RWRSARA ARQARR N
Sbjct:  145 FATCSGILALAEKRRKRKGISLARAWSIPQGMPVLRATVTDLSDAVRGR--ASIWRAEGLDGADVGDDNLLEHVGLLEEIPNDSIYGALVQQRDSDIPVAKLAEDNWATALAFAGGQPNPDSDPVTYGSTSXXXXXXXXXXXXXXXXXXXXXQSWSISRWRSARATARQARRLN 316
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJE0_ECTSI1.240e-4760.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5L4_9PHAE4.360e-4158.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:639719..643768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_006000.1
Exons4
Model size2688
Cds size984
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15068.1prot_P-fluviatile_contig9.15068.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 640962..643307 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817312.1361036-UTR-P-fluviatile_contig9:639718..6409611622817312.1361036-UTR-P-fluviatile_contig9:639718..640961Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 639719..640961 -
1693572020.5003607-UTR-P-fluviatile_contig9:639718..6409611693572020.5003607-UTR-P-fluviatile_contig9:639718..640961Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 639719..640961 -
1622817312.1931279-UTR-P-fluviatile_contig9:643307..6437681622817312.1931279-UTR-P-fluviatile_contig9:643307..643768Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 643308..643768 -
1693572020.5625725-UTR-P-fluviatile_contig9:643307..6437681693572020.5625725-UTR-P-fluviatile_contig9:643307..643768Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 643308..643768 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817312.14718-CDS-P-fluviatile_contig9:640961..6414071622817312.14718-CDS-P-fluviatile_contig9:640961..641407Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 640962..641407 -
1693572020.5142555-CDS-P-fluviatile_contig9:640961..6414071693572020.5142555-CDS-P-fluviatile_contig9:640961..641407Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 640962..641407 -
1622817312.1576788-CDS-P-fluviatile_contig9:641942..6420961622817312.1576788-CDS-P-fluviatile_contig9:641942..642096Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 641943..642096 -
1693572020.5258343-CDS-P-fluviatile_contig9:641942..6420961693572020.5258343-CDS-P-fluviatile_contig9:641942..642096Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 641943..642096 -
1622817312.1699972-CDS-P-fluviatile_contig9:642584..6428711622817312.1699972-CDS-P-fluviatile_contig9:642584..642871Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 642585..642871 -
1693572020.5344067-CDS-P-fluviatile_contig9:642584..6428711693572020.5344067-CDS-P-fluviatile_contig9:642584..642871Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 642585..642871 -
1622817312.1809447-CDS-P-fluviatile_contig9:643210..6433071622817312.1809447-CDS-P-fluviatile_contig9:643210..643307Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 643211..643307 -
1693572020.5440712-CDS-P-fluviatile_contig9:643210..6433071693572020.5440712-CDS-P-fluviatile_contig9:643210..643307Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 643211..643307 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15068.1

>prot_P-fluviatile_contig9.15068.1 ID=prot_P-fluviatile_contig9.15068.1|Name=mRNA_P-fluviatile_contig9.15068.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=328bp
MRNVFVCHRARVMLRCRRRSRLLVEQRTAPRAEILLHEPGVPRGGSCVRP
MPPGDRRRRRQRRHVLVLLWDPQHGVRLGLELGRGPGNPFCVGGFATCSG
ILALTEKRRKRKGMSLARAWSIPHGMPMLRATVVDLSDAVRGRGSASIWR
AGGSNVEGASDEDLLEHVGLLEEITDDSIYGALVEQHEVPVAKLAEDNWV
TAMAWRQRVDVGEQGREVSADDGAAERWRSARAMARQARRANNGNGAGAG
AGAGVAVSGAAAPLRNLSAAAAAAPTVEFNFGRSRSQATGGGGGSRWEPP
PAVVLNGNERWEVEEVEEQGEEDRGRE*
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mRNA from alignment at P-fluviatile_contig9:639719..643768-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15068.1 ID=mRNA_P-fluviatile_contig9.15068.1|Name=mRNA_P-fluviatile_contig9.15068.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4050bp|location=Sequence derived from alignment at P-fluviatile_contig9:639719..643768- (Porterinema fluviatile SAG_2381)
CTATCCAGGTGGAGAAGAGCGTCGGATTCAGCTGGAAGCCCGGGTCGTCA
CCTTCAGCCCGGGGAAACGGATGACCATAGGGGTACATACCAATGTGGCA
TGATTTTCGTTGTATTAGAAAGCTCTCCTAGCCTACAAGCTTCAGCTACA
CCCTGCTTCTGGCCAAAGCAATGCGTTTTTAGCGACCCAAGTAAACAACT
GCGGGCCTGCTTTGTTTCTGTGTTTGGTGGCGGGCTCGCAGTTCGGAACT
CTCATGAGCCCAAGTTTTAGCCAGCTCTAACCTAGGGTTTAGACAAAATG
TGTGCCAAGTTCCTTCAATAGTAATCCAACAGTCGTCCTCACGCCCCTCT
CCGTTGGCCGTGCTTGTGCAATCAACGCAATGCCCTGCAGCAGGTTCCCC
GCCGCAAGGTCGGCTGGGAAGCAGCTTCCAAAAAGATCGGGCATTTTCTC
CTACTCGTGGTATGCGGAACGTTTTCGTGTGCCACCGGGCAAGGGTCATG
TTGCGCTGCCGACGGCGGTCTCGATTGCTCGTCGAGCAGCGTACAGCACC
TCGGGCAGGTGTGCGGACATAAGCATTTTTTTAGTCATTTCGTCTCGAGT
TTTTCACGTGGCACACCAGACCTGAGCGAACACCTTATTGGGCTCTCTCT
CTCTCCCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTTTCTCTCTCAACGCACGTAAACATACGTGAAAGGCAATAGAG
CAAAGTAACACGCCCGCATACGTTCGTGTTTTCGAAACTGTAGTGGCAGC
CGTGCACAGAGAAACCACGTTTACTTCCAGACGCGTCCCCCCCCTCGCTT
ATGCTCGTTCCCTCGTTCTCACAACATCACGGGACGGACGCGTGCAGAGA
TACTACTGCATGAACCTGGAGTCCCCCGAGGTGGATCGTGCGTGCGTCCA
ATGCCTCCCGGCGACCGGCGGCGGCGGCGGCAGCGCAGGCACGTGCTTGT
CCTGCTGTGGGACCCCCAACACGGAGTGCGACTTGGATTGGAGCTGGGGC
GCGGTCCTGGCAACCCTTTCTGTGTCGGCGGTTTTGCGACCTGCTCGGGC
ATTCTCGCCCTGACGGAAAAGCGGCGCAAGCGGAAGGGCATGTCTCTGGC
TAGGGCGTGGTCGATTCCGCACGGGATGCCAATGGTGAGGCGGCGGTGTT
ATTGGAAGAGCGGGTTGATAGGCTTTGTCCGGAGCAGATGGCGGGTGCTC
GACGGAGGATTGAGTCTGAACGTTGCTGACCGCCGTAGAAGCATGGAGCC
TCAGCATTTTCTCGTTTCTGCTCTACGGGAAGGAGTACAAATGTGTCATT
ACAGCTCGCTTGCCCCCCCCGCTCTTTGTCCGCGGTTCAACCCCCCCAGC
GAAGAAGAGTTGCTATTGAAGGAGCCACGAGTAGCACGTCAAAACCATTG
ATCTGCACGGCTGCACGGAGCTGCCCTCGTGCCTGTCAGTGCGTGGTGCC
TTCGTGTCCTTGCCAGCGATTTGCAACGTAATTTGCAATACCCCCACAGA
AGCATGCTCTGCTCCGCTGTTTTCCAGACAAACCCCGCTCAAATGCTCCA
AGCAGAAATCTCAGTTACCTCAATCACGCGTTGCTGCTGGCACGGTGCCC
CTCCCCTCTCACAACCTCAAAGCTGCGGGCGACAGTGGTGGATCTTTCGG
ACGCTGTTCGAGGTAGAGGTAGCGCATCTATCTGGAGAGCGGGCGGCTCG
AACGTTGAGGGCGCCAGCGACGAAGACTTGCTGGAGCACGTGGGACTCTT
AGAAGAAATCACAGACGACTCGATATGTGAGTGGACGGAGGACGAAGGAG
GGGAGGCTGCGGCGTGGTTGTCTAGGTGGTGCATTCCTTTCATCTCGCTT
TTTCACTCTCTGTTGATCACCTCCCCGGGATCGAAAGGCTGATGCTTCAC
TATCGTGTCCTAGGATATCCGCCCCGTGCAATTCCGCACGCGACATCGGC
AGCTGCTGCTGATGTCGATCAGATGTCACTGCTGTAGTAGCGCAGACTTG
GATAGTGTTAGCCGCGTCGTGTTCGTCGTGCATGCATGCTCTACGTCAGG
CTTGTGTACAGCGCCGACCTGTATGAGTGGTGCTTGATCGCCCCTCCATC
CTCATCCCCGAAGTCCCGGGGAAACAGTGGCAAAGCAAGTATCAACGTCG
TTTTGGCAAAGAAACGGCTTTTATAGATTCAGCTAGACTTGGGTTAACCG
CCGCCGGCAGTGTCGTTTTATGATCCAACTCAGTGTATCGCGCTCTTGTC
GCCTGCTCTGCCCTGTCCACCCCTCGGCACGGAAAACATGGCCACGAAAA
AAAAAAATTAGACGGTGCGCTCGTGGAGCAGCACGAAGTCCCCGTGGCCA
AGCTGGCCGAGGACAACTGGGTGACAGCGATGGCCTGGCGCCAGCGCGTC
GACGTCGGCGAACAGGGGCGCGAGGTCTCAGCAGACGACGGGGCAGCAGA
GAGGTGGAGATCCGCTCGGGCCATGGCTAGACAGGCTCGCCGCGCCAACA
ACGGAAATGGCGCCGGCGCCGGCGCTGGCGCCGGTGTTGCGGTGTCTGGA
GCGGCCGCGCCGCTCAGAAACCTATCGGCGGCGGCGGCGGCGGCGCCGAC
AGTAGAGTTCAACTTCGGCCGTAGCAGAAGCCAGGCGACCGGAGGGGGGG
GCGGGAGCCGTTGGGAGCCGCCGCCGGCGGTTGTGCTTAACGGCAATGAG
AGATGGGAGGTCGAGGAGGTGGAGGAGCAGGGGGAGGAGGACAGAGGAAG
GGAATAGGGATGGCCGAGTGTATTGGCACCCGGCCGGTCGGGCGGCCCGT
TTTCCTTGTACAAGAACGCGTTTTGTTTGCAATTGGTTTTCTGGGTGAGT
GTCGTAGTGTACACAGTACGGTATTGGAACGCCGCGTGTACATTTTACCG
GGTGAATGAAGCGACGCAAGCGCACGTGGATCTTCTTGCATTTCCGTAGC
ATCGGGGGGTAAATCGAAGGCAGCATTATAAGGCTCGGAACCCCAATGTC
CCATCAACGCACGCGAATCATCGTGTATTTTGAGCTCCGGCAAATGTTGA
CGTTCATGTGCTTCGGCGTTTTTTTGTGAAGAAGTGAAAACGTATTCGAC
GGAATCAAGGGCCTTATGGACCGGACGATTTCTTAACATCCATCATTGTA
CATTACTTGCCCGCGCTCAAAGAACAAATCTCGCTCGGAACCTCTTGCAT
CATCGAGTTTGATATATTGACTTGATCGATACCTCGAAAGGACAAAAAAT
GGCCAAGCTATGGCTGTTTGTAGTTGTGTGCGGGAGGTCGTGATGTGCTT
TCACCGCGGGGTGTCTGATGCGTGCGTGCTTTGCAGTCTTGACTGGTCGT
CGATCGTGATTTTGCATTTGGACCGCAGGTGGGTGGGTGCTCGCCCTGTG
TGCCGGTGAATATAAAGTAGAGGTGTTGTGGTGGCGTGCGTAGATTCGAT
TCGAAGAGGGAGAGACCGACAAAACCTTTCCGCCGGTGATTCTCGATTCC
ATCCGGAACAGTGATCCCGCAAGCTTCAGAAACATGGCGGCGGCCGATAT
TTGTTTGAGACTTAACCCTCTGAACTCCGGGGACCTTCACTCTGAGGGAG
GCGCGTGGATCGGCGAGTCTGGCAAGGCTTTGGAGGGCAGTCCCTCTTTT
TCGAGAGTGTGATTTCGTCACGGCGATGGTTTTTGTCCGGGGTTGATCTC
GTTAGCCGGCCAGCTACATGCGTCTACTGTTGTGCGTGCGTTATTTGGAC
GCCATTTTCTTGCGCGTGCCGCAGGCGCGCATGCATGCGGAGGTTCCTGT
ACCCGCCTCGGGCGGCATCATCTTGTGGTTGGCGAGGCCTTCAGACACGA
AAAAAATCAAGCGTAGGAGCAGGGGGGGGGCGATCGTGAAAAAGAAACCC
GGAAGATGAAAATGCCGTGGGTGCCTGCAGCTAATCTTTCTCGGGCGGGA
ATTCCGGAAGCAGGACGCCGCCACCCCCATCTCGACGCTGAGGGAGGGAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig9:639719..643768-

>mRNA_P-fluviatile_contig9.15068.1 ID=mRNA_P-fluviatile_contig9.15068.1|Name=mRNA_P-fluviatile_contig9.15068.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1968bp|location=Sequence derived from alignment at P-fluviatile_contig9:639719..643768- (Porterinema fluviatile SAG_2381)
ATGCGGAACGTTTTCGTGTGCCACCGGGCAAGGGTCATGTTGCGCTGCCG
ACGGCGGTCTCGATTGCTCGTCGAGCAGCGTACAGCACCTCGGGCAGATG
CGGAACGTTTTCGTGTGCCACCGGGCAAGGGTCATGTTGCGCTGCCGACG
GCGGTCTCGATTGCTCGTCGAGCAGCGTACAGCACCTCGGGCAGAGATAC
TACTGCATGAACCTGGAGTCCCCCGAGGTGGATCGTGCGTGCGTCCAATG
CCTCCCGGCGACCGGCGGCGGCGGCGGCAGCGCAGGCACGTGCTTGTCCT
GCTGTGGGACCCCCAACACGGAGTGCGACTTGGATTGGAGCTGGGGCGCG
GTCCTGGCAACCCTTTCTGTGTCGGCGGTTTTGCGACCTGCTCGGGCATT
CTCGCCCTGACGGAAAAGCGGCGCAAGCGGAAGGGCATGTCTCTGGCTAG
GGCGTGGTCGATTCCGCACGGGATGCCAATGAGATACTACTGCATGAACC
TGGAGTCCCCCGAGGTGGATCGTGCGTGCGTCCAATGCCTCCCGGCGACC
GGCGGCGGCGGCGGCAGCGCAGGCACGTGCTTGTCCTGCTGTGGGACCCC
CAACACGGAGTGCGACTTGGATTGGAGCTGGGGCGCGGTCCTGGCAACCC
TTTCTGTGTCGGCGGTTTTGCGACCTGCTCGGGCATTCTCGCCCTGACGG
AAAAGCGGCGCAAGCGGAAGGGCATGTCTCTGGCTAGGGCGTGGTCGATT
CCGCACGGGATGCCAATGCTGCGGGCGACAGTGGTGGATCTTTCGGACGC
TGTTCGAGGTAGAGGTAGCGCATCTATCTGGAGAGCGGGCGGCTCGAACG
TTGAGGGCGCCAGCGACGAAGACTTGCTGGAGCACGTGGGACTCTTAGAA
GAAATCACAGACGACTCGATATCTGCGGGCGACAGTGGTGGATCTTTCGG
ACGCTGTTCGAGGTAGAGGTAGCGCATCTATCTGGAGAGCGGGCGGCTCG
AACGTTGAGGGCGCCAGCGACGAAGACTTGCTGGAGCACGTGGGACTCTT
AGAAGAAATCACAGACGACTCGATATACGGTGCGCTCGTGGAGCAGCACG
AAGTCCCCGTGGCCAAGCTGGCCGAGGACAACTGGGTGACAGCGATGGCC
TGGCGCCAGCGCGTCGACGTCGGCGAACAGGGGCGCGAGGTCTCAGCAGA
CGACGGGGCAGCAGAGAGGTGGAGATCCGCTCGGGCCATGGCTAGACAGG
CTCGCCGCGCCAACAACGGAAATGGCGCCGGCGCCGGCGCTGGCGCCGGT
GTTGCGGTGTCTGGAGCGGCCGCGCCGCTCAGAAACCTATCGGCGGCGGC
GGCGGCGGCGCCGACAGTAGAGTTCAACTTCGGCCGTAGCAGAAGCCAGG
CGACCGGAGGGGGGGGCGGGAGCCGTTGGGAGCCGCCGCCGGCGGTTGTG
CTTAACGGCAATGAGAGATGGGAGGTCGAGGAGGTGGAGGAGCAGGGGGA
GGAGGACAGAGGAAGGGAATAGACGGTGCGCTCGTGGAGCAGCACGAAGT
CCCCGTGGCCAAGCTGGCCGAGGACAACTGGGTGACAGCGATGGCCTGGC
GCCAGCGCGTCGACGTCGGCGAACAGGGGCGCGAGGTCTCAGCAGACGAC
GGGGCAGCAGAGAGGTGGAGATCCGCTCGGGCCATGGCTAGACAGGCTCG
CCGCGCCAACAACGGAAATGGCGCCGGCGCCGGCGCTGGCGCCGGTGTTG
CGGTGTCTGGAGCGGCCGCGCCGCTCAGAAACCTATCGGCGGCGGCGGCG
GCGGCGCCGACAGTAGAGTTCAACTTCGGCCGTAGCAGAAGCCAGGCGAC
CGGAGGGGGGGGCGGGAGCCGTTGGGAGCCGCCGCCGGCGGTTGTGCTTA
ACGGCAATGAGAGATGGGAGGTCGAGGAGGTGGAGGAGCAGGGGGAGGAG
GACAGAGGAAGGGAATAG
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