mRNA_P-fluviatile_contig9.15066.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15066.1
Unique NamemRNA_P-fluviatile_contig9.15066.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig9.15066.1 vs. uniprot
Match: D8LUA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUA1_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 3.500e-50
Identity = 109/224 (48.66%), Postives = 132/224 (58.93%), Query Frame = 1 
Query:    1 MVLEEDVLSRVFEYVDSIDKTPRRGGASSTVAAVPGQQVLLVCGGAECRRVSRSWRVSIERALGRVLPPTPSAALAALLSPGRLRFVLLSCRYN----HEQGLVSAYDALVSRAEAVGLRLREAVAARGELYSSAQLAASQGLTAGVAAAEPSSLSSQERSRGGT-VDYNSRHYVCYRLALKRAVGKALESPVFSWCSTLGQDDSRLLEGCVGASSLLSARWFS 657
            M LE DVLS V E+VDS++  P     S  VA V      +V GGAECR V RSWR+++E+ +GRVLPP    +LAALL PGRLR VLLSC+Y     HE    +A+ ALVSRA+A                            AG     PS     E + GG  +  N+  +VC R+ALKR V +AL+SP FSWCSTLG DDSRLLE CVGASSL++ARWFS
Sbjct:    1 MTLEADVLSVVLEFVDSLEGAP----PSEEVAHV------VVQGGAECRAVCRSWRITVEKTIGRVLPPMTPVSLAALLVPGRLRGVLLSCQYLGREFHEHAAAAAFVALVSRADAXXXXXXXXXXXXXXXXX---------XXAGAPRGVPSQGVMAEEAAGGEGIINNNTSFVCCRVALKRIVREALDSPAFSWCSTLGLDDSRLLESCVGASSLVNARWFS 205
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUA1_ECTSI3.500e-5048.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:631724..632386 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_004240.1
Exons1
Model size663
Cds size663
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817311.9567993-CDS-P-fluviatile_contig9:631723..6323861622817311.9567993-CDS-P-fluviatile_contig9:631723..632386Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 631724..632386 -
1693572020.3406157-CDS-P-fluviatile_contig9:631723..6323861693572020.3406157-CDS-P-fluviatile_contig9:631723..632386Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 631724..632386 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15066.1prot_P-fluviatile_contig9.15066.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 631724..632386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15066.1

>prot_P-fluviatile_contig9.15066.1 ID=prot_P-fluviatile_contig9.15066.1|Name=mRNA_P-fluviatile_contig9.15066.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=221bp
MVLEEDVLSRVFEYVDSIDKTPRRGGASSTVAAVPGQQVLLVCGGAECRR
VSRSWRVSIERALGRVLPPTPSAALAALLSPGRLRFVLLSCRYNHEQGLV
SAYDALVSRAEAVGLRLREAVAARGELYSSAQLAASQGLTAGVAAAEPSS
LSSQERSRGGTVDYNSRHYVCYRLALKRAVGKALESPVFSWCSTLGQDDS
RLLEGCVGASSLLSARWFSE*
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mRNA from alignment at P-fluviatile_contig9:631724..632386-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15066.1 ID=mRNA_P-fluviatile_contig9.15066.1|Name=mRNA_P-fluviatile_contig9.15066.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=663bp|location=Sequence derived from alignment at P-fluviatile_contig9:631724..632386- (Porterinema fluviatile SAG_2381)
ATGGTTCTGGAGGAGGATGTGCTGAGCAGAGTCTTTGAATATGTGGATTC
CATCGACAAGACACCACGACGAGGAGGAGCTTCTTCAACGGTTGCAGCCG
TTCCAGGTCAACAAGTTCTTCTTGTCTGCGGCGGTGCGGAATGCCGCCGC
GTGAGTCGGAGCTGGCGGGTTTCGATCGAGAGAGCTCTCGGACGGGTCCT
GCCTCCGACACCATCCGCCGCGCTTGCGGCTTTACTCTCGCCAGGCAGGC
TTCGCTTCGTGCTGCTCAGTTGCCGATACAACCACGAACAAGGGCTGGTT
AGCGCGTACGATGCGCTCGTGTCGAGAGCCGAAGCGGTAGGCCTTCGCCT
GCGTGAGGCTGTAGCAGCGCGTGGGGAGCTGTACTCATCTGCACAACTAG
CGGCTAGCCAAGGCTTGACGGCTGGAGTAGCGGCAGCGGAGCCTTCATCG
TTGTCTTCGCAGGAACGTTCAAGGGGAGGCACTGTCGACTATAATTCCCG
TCACTACGTTTGCTACCGGTTAGCGTTAAAGCGGGCCGTGGGGAAAGCTC
TGGAGAGCCCTGTATTCTCGTGGTGCAGCACCCTCGGCCAGGACGACTCG
CGTCTTCTCGAGGGCTGCGTAGGAGCCTCTTCCCTTCTGAGCGCCAGATG
GTTTTCGGAATAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig9:631724..632386-

>mRNA_P-fluviatile_contig9.15066.1 ID=mRNA_P-fluviatile_contig9.15066.1|Name=mRNA_P-fluviatile_contig9.15066.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1326bp|location=Sequence derived from alignment at P-fluviatile_contig9:631724..632386- (Porterinema fluviatile SAG_2381)
ATGGTTCTGGAGGAGGATGTGCTGAGCAGAGTCTTTGAATATGTGGATTC
CATCGACAAGACACCACGACGAGGAGGAGCTTCTTCAACGGTTGCAGCCG
TTCCAGGTCAACAAGTTCTTCTTGTCTGCGGCGGTGCGGAATGCCGCCGC
GTGAGTCGGAGCTGGCGGGTTTCGATCGAGAGAGCTCTCGGACGGGTCCT
GCCTCCGACACCATCCGCCGCGCTTGCGGCTTTACTCTCGCCAGGCAGGC
TTCGCTTCGTGCTGCTCAGTTGCCGATACAACCACGAACAAGGGCTGGTT
AGCGCGTACGATGCGCTCGTGTCGAGAGCCGAAGCGGTAGGCCTTCGCCT
GCGTGAGGCTGTAGCAGCGCGTGGGGAGCTGTACTCATCTGCACAACTAG
CGGCTAGCCAAGGCTTGACGGCTGGAGTAGCGGCAGCGGAGCCTTCATCG
TTGTCTTCGCAGGAACGTTCAAGGGGAGGCACTGTCGACTATAATTCCCG
TCACTACGTTTGCTACCGGTTAGCGTTAAAGCGGGCCGTGGGGAAAGCTC
TGGAGAGCCCTGTATTCTCGTGGTGCAGCACCCTCGGCCAGGACGACTCG
CGTCTTCTCGAGGGCTGCGTAGGAGCCTCTTCCCTTCTGAGCGCCAGATG
GTTTTCGGAATAGATGGTTCTGGAGGAGGATGTGCTGAGCAGAGTCTTTG
AATATGTGGATTCCATCGACAAGACACCACGACGAGGAGGAGCTTCTTCA
ACGGTTGCAGCCGTTCCAGGTCAACAAGTTCTTCTTGTCTGCGGCGGTGC
GGAATGCCGCCGCGTGAGTCGGAGCTGGCGGGTTTCGATCGAGAGAGCTC
TCGGACGGGTCCTGCCTCCGACACCATCCGCCGCGCTTGCGGCTTTACTC
TCGCCAGGCAGGCTTCGCTTCGTGCTGCTCAGTTGCCGATACAACCACGA
ACAAGGGCTGGTTAGCGCGTACGATGCGCTCGTGTCGAGAGCCGAAGCGG
TAGGCCTTCGCCTGCGTGAGGCTGTAGCAGCGCGTGGGGAGCTGTACTCA
TCTGCACAACTAGCGGCTAGCCAAGGCTTGACGGCTGGAGTAGCGGCAGC
GGAGCCTTCATCGTTGTCTTCGCAGGAACGTTCAAGGGGAGGCACTGTCG
ACTATAATTCCCGTCACTACGTTTGCTACCGGTTAGCGTTAAAGCGGGCC
GTGGGGAAAGCTCTGGAGAGCCCTGTATTCTCGTGGTGCAGCACCCTCGG
CCAGGACGACTCGCGTCTTCTCGAGGGCTGCGTAGGAGCCTCTTCCCTTC
TGAGCGCCAGATGGTTTTCGGAATAG
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