mRNA_P-fluviatile_contig9.15042.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15042.1
Unique NamemRNA_P-fluviatile_contig9.15042.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig9.15042.1 vs. uniprot
Match: A0A6H5KQM2_9PHAE (DNA polymerase kappa n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KQM2_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.780e-12
Identity = 45/88 (51.14%), Postives = 55/88 (62.50%), Query Frame = -3 
Query:  104 VATAAAATPNVTSVACPVCGEELGAASNAAVNRHLDACLGVCTSSSREVA----------------TFSRKRPKISAAGIERFFSS*E 319
            +ATAAA      +V+CPVCGEELGAASNAA+NRHLDACLGVC  +  E                   F +KR K+S++GIERF +S E
Sbjct:  623 LATAAA------NVSCPVCGEELGAASNAALNRHLDACLGVCAPAGEEXXXXXXXXXXXXXXXKEEAFPKKRAKVSSSGIERFLTSKE 704
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KQM2_9PHAE4.780e-1251.14DNA polymerase kappa n=2 Tax=Ectocarpus TaxID=2879... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:368537..369097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size561
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15042.1prot_P-fluviatile_contig9.15042.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 368542..368934 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817302.7445655-UTR-P-fluviatile_contig9:368536..3685411622817302.7445655-UTR-P-fluviatile_contig9:368536..368541Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 368537..368541 +
1693571999.467051-UTR-P-fluviatile_contig9:368536..3685411693571999.467051-UTR-P-fluviatile_contig9:368536..368541Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 368537..368541 +
1622817302.7682412-UTR-P-fluviatile_contig9:368934..3690971622817302.7682412-UTR-P-fluviatile_contig9:368934..369097Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 368935..369097 +
1693571999.4881458-UTR-P-fluviatile_contig9:368934..3690971693571999.4881458-UTR-P-fluviatile_contig9:368934..369097Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 368935..369097 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817302.7555242-CDS-P-fluviatile_contig9:368541..3689341622817302.7555242-CDS-P-fluviatile_contig9:368541..368934Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 368542..368934 +
1693571999.4776754-CDS-P-fluviatile_contig9:368541..3689341693571999.4776754-CDS-P-fluviatile_contig9:368541..368934Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 368542..368934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15042.1

>prot_P-fluviatile_contig9.15042.1 ID=prot_P-fluviatile_contig9.15042.1|Name=mRNA_P-fluviatile_contig9.15042.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=131bp
MNSVCANAHCRNVTPKPSTSAHRHKSPRHIYVSSYEEKNLSIPAAEIFGR
FLENVATSLLELVHTPKHASKCRLTAAFDAAPSSSPHTGQATLVTFGVAA
AAVATFEAPFQLASSGSLPNRSCFCAGTAA*
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mRNA from alignment at P-fluviatile_contig9:368537..369097+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15042.1 ID=mRNA_P-fluviatile_contig9.15042.1|Name=mRNA_P-fluviatile_contig9.15042.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=561bp|location=Sequence derived from alignment at P-fluviatile_contig9:368537..369097+ (Porterinema fluviatile SAG_2381)
ACCCGATGAATTCCGTGTGCGCCAACGCACACTGCCGAAACGTCACCCCC
AAACCCTCAACCTCTGCGCATAGACACAAGTCACCGCGACATATTTACGT
GAGCTCTTACGAAGAAAAAAATCTCTCGATTCCCGCGGCCGAAATCTTCG
GGCGCTTTCTCGAAAATGTGGCAACCTCCCTGCTCGAGCTTGTGCACACG
CCCAAGCACGCGTCCAAATGTCGATTGACCGCTGCGTTCGATGCAGCGCC
TAGCTCCTCGCCGCACACCGGGCAAGCGACGCTGGTGACATTCGGTGTGG
CCGCTGCCGCGGTCGCAACGTTCGAGGCGCCTTTCCAACTGGCCTCCTCA
GGTTCGCTCCCCAACCGCTCTTGCTTCTGCGCAGGTACCGCAGCTTGAGA
CGGGCACGGTGCCATCGGATGACCGAACGCCACCGGTGTCCCCAACGCCG
TCGGTACCCCCGACCCCTCCCGCTTGAGCCGTCCTTGCTCACCATCTCCC
TTTTGCTCTACCTCCTTCTCGTGGTCCGCCTCCTCCTCGATATCCCCATT
CTCTACCCCCT
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Coding sequence (CDS) from alignment at P-fluviatile_contig9:368537..369097+

>mRNA_P-fluviatile_contig9.15042.1 ID=mRNA_P-fluviatile_contig9.15042.1|Name=mRNA_P-fluviatile_contig9.15042.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=786bp|location=Sequence derived from alignment at P-fluviatile_contig9:368537..369097+ (Porterinema fluviatile SAG_2381)
ATGAATTCCGTGTGCGCCAACGCACACTGCCGAAACGTCACCCCCAAACC
CTCAACCTCTGCGCATAGACACAAGTCACCGCGACATATTTACGTGAGCT
CTTACGAAGAAAAAAATCTCTCGATTCCCGCGGCCGAAATCTTCGGGCGC
TTTCTCGAAAATGTGGCAACCTCCCTGCTCGAGCTTGTGCACACGCCCAA
GCACGCGTCCAAATGTCGATTGACCGCTGCGTTCGATGCAGCGCCTAGCT
CCTCGCCGCACACCGGGCAAGCGACGCTGGTGACATTCGGTGTGGCCGCT
GCCGCGGTCGCAACGTTCGAGGCGCCTTTCCAACTGGCCTCCTCAGGTTC
GCTCCCCAACCGCTCTTGCTTCTGCGCAGGTACCGCAGCTTGAATGAATT
CCGTGTGCGCCAACGCACACTGCCGAAACGTCACCCCCAAACCCTCAACC
TCTGCGCATAGACACAAGTCACCGCGACATATTTACGTGAGCTCTTACGA
AGAAAAAAATCTCTCGATTCCCGCGGCCGAAATCTTCGGGCGCTTTCTCG
AAAATGTGGCAACCTCCCTGCTCGAGCTTGTGCACACGCCCAAGCACGCG
TCCAAATGTCGATTGACCGCTGCGTTCGATGCAGCGCCTAGCTCCTCGCC
GCACACCGGGCAAGCGACGCTGGTGACATTCGGTGTGGCCGCTGCCGCGG
TCGCAACGTTCGAGGCGCCTTTCCAACTGGCCTCCTCAGGTTCGCTCCCC
AACCGCTCTTGCTTCTGCGCAGGTACCGCAGCTTGA
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