mRNA_P-fluviatile_contig9.15039.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15039.1
Unique NamemRNA_P-fluviatile_contig9.15039.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig9.15039.1 vs. uniprot
Match: D8LUC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUC5_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 4.120e-38
Identity = 70/117 (59.83%), Postives = 83/117 (70.94%), Query Frame = 2 
Query:  335 QQRALFELLGVSEDAGVYVLIAGLVLVGLTVIACCYCKVYDPLRLWCLRMHKKWCTRKPRPPAGPPKDGPSTPERNHWYLNKTLKIDRQDRDELGPQGDRKGLKGGWYGARNGGFDV 685
            ++R LF++ GVSED G YVLIAGL++ GLT  ACCYCKVYDPLR W ++ + + C +                 R HWYLN+TL+IDR DRDELGPQG R GLKGGWYGARNGGFDV
Sbjct:    9 ERRILFDVFGVSEDDGAYVLIAGLIMGGLTFTACCYCKVYDPLRNWSIKTYNRCCKKXXXXXXXXXXXXXXXXXRRHWYLNQTLQIDRADRDELGPQGARTGLKGGWYGARNGGFDV 125
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUC5_ECTSI4.120e-3859.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:356470..359696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_004460.1
Exons3
Model size1567
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15039.1prot_P-fluviatile_contig9.15039.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 357349..358768 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817308.3345928-UTR-P-fluviatile_contig9:356469..3573481622817308.3345928-UTR-P-fluviatile_contig9:356469..357348Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 356470..357348 -
1693572009.775267-UTR-P-fluviatile_contig9:356469..3573481693572009.775267-UTR-P-fluviatile_contig9:356469..357348Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 356470..357348 -
1622817308.3752766-UTR-P-fluviatile_contig9:358768..3589811622817308.3752766-UTR-P-fluviatile_contig9:358768..358981Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 358769..358981 -
1693572009.804445-UTR-P-fluviatile_contig9:358768..3589811693572009.804445-UTR-P-fluviatile_contig9:358768..358981Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 358769..358981 -
1622817308.3863366-UTR-P-fluviatile_contig9:359629..3596961622817308.3863366-UTR-P-fluviatile_contig9:359629..359696Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 359630..359696 -
1693572009.812508-UTR-P-fluviatile_contig9:359629..3596961693572009.812508-UTR-P-fluviatile_contig9:359629..359696Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 359630..359696 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817308.3457782-CDS-P-fluviatile_contig9:357348..3574801622817308.3457782-CDS-P-fluviatile_contig9:357348..357480Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 357349..357480 -
1693572009.7855396-CDS-P-fluviatile_contig9:357348..3574801693572009.7855396-CDS-P-fluviatile_contig9:357348..357480Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 357349..357480 -
1622817308.3612401-CDS-P-fluviatile_contig9:358492..3587681622817308.3612401-CDS-P-fluviatile_contig9:358492..358768Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 358493..358768 -
1693572009.7961588-CDS-P-fluviatile_contig9:358492..3587681693572009.7961588-CDS-P-fluviatile_contig9:358492..358768Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 358493..358768 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15039.1

>prot_P-fluviatile_contig9.15039.1 ID=prot_P-fluviatile_contig9.15039.1|Name=mRNA_P-fluviatile_contig9.15039.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=136bp
MEEIGQYYSHQQRHQEQQQQRALFELLGVSEDAGVYVLIAGLVLVGLTVI
ACCYCKVYDPLRLWCLRMHKKWCTRKPRPPAGPPKDGPSTPERNHWYLNK
TLKIDRQDRDELGPQGDRKGLKGGWYGARNGGFDV*
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mRNA from alignment at P-fluviatile_contig9:356470..359696-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15039.1 ID=mRNA_P-fluviatile_contig9.15039.1|Name=mRNA_P-fluviatile_contig9.15039.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3227bp|location=Sequence derived from alignment at P-fluviatile_contig9:356470..359696- (Porterinema fluviatile SAG_2381)
CCTCCCGAGCTGCTCGTCACGTAGCACGTAGCTGGCATCGCGTGGCGTTT
TGGAAGACGAACGTCAGGTCAGTCCCCTCCATGTGTGGTTACGATAGTCT
CCTGGAATTATCCCAAGCGTTGAATCGGAGAAGAGAGACAATAGACGCTT
AAATCAAACCGATGTGTGTTATGCACCAACGGCGGTTGAACGATAGTGTT
GTGTAGTGGATTCGTTCGTCTGCCCGCTCGCTCCCTCACTCAGCATCATG
GCTAAAGCACCGTCTGTTTCCTCCACGTATGCACACGTTAACTCCAAAAC
ATCGGCGTCGGTCTATTTGCTTGTATTCGACAGTCCCGCCGACACACTAG
CCTGCTTCAATATCTCTCACTCTCGCTCATGTCTCTCATTTGCGATGCGC
GCGCTATGTTAAGTGCTGTGACCTCTACAAAGGTCATTTTTAAAAGAAAA
CACAGTCAAAACACCGAAGGAAGAAACGCACAATGAGGCGGAACTCACGG
TGCTCCGTGGAGTTCCCCCCTCTGTTATGCCACCGTGTACATTTAACAAA
GCACGAAGGTGGCATTTTGCGAACAGCCGAGAGATATACGGCTTGCCTTG
GCCGCTTGTATCATCATACCCTCGCCTTCTCCCCCGCCCCCTTCCTCCTC
AAGCCATCTTCCTCCAATTACCCACTCGACGCCTCTACTGATCTTTCTGC
GGTATATCTTCGTAGCCGCAGCACAAAAAAAACAAACTGTGACCAGAAGG
CGACGAAAAAGTGGAACCGGCGGCTGCATTGTTCGAAAGGAAGGCCAGCG
GTCTCTTGGAGCGGGTTGGGCGGGGAAGGAGACGGGCGCGGGCTGGGAGG
AAAGACCGGAGGGTGCGTTCGGCCTAGCCAACAGGCTGCGATCGAAGCGT
GATAAGCAGAGCAGATCGCACCGAGGTCATGGAAGAAATCGGACAGTATT
ACAGCCACCAGCAGCGGCACCAGGAGCAGCAGCAGCAGCGCGCGCTCTTC
GAGCTGCTCGGGGTGAGTGAGGACGCAGGGGTCTACGTCCTCATCGCCGG
GCTGGTACTGGTAGGACTGACCGTCATCGCATGCTGCTACTGCAAGGTAT
ACGACCCGCTGCGTTTGTGGTGCCTCCGGATGCACAAGAAGTGGTGCACG
AGGAAACCAAGGCCACCAGCAGGACCACCGAAAGACGGCCCGTCGACGCC
AGAGGTGAACAGCGACAAATCTTTGAAAAATGGCCCCCACTCTCCTGCTT
CGGCGAAACAGTTTTTTTCGTTTACTAGCACAAGGCTCGGTCCACTTTGC
TTGGGGGGCAATGCAGCGAAGGCGCCGAGGCTAGGACGGGGATGAGGAGG
CAACAAGAGAGCGAGCATGTGTCTCGAAAGGATTCGATGTGCGGACCAGA
ACGTTCACATGCTGACCTGAGACGGAAGGCTAACACGTGGACGTTGGGAG
GTCAATGGGGCAGGGAAGCGGTCGGTTCGGATGGCTTTCCCTTCTGTTTC
ATCGCTGTTGCAAACGATGGCTGAATGAGGATCAGGCACAATATGGCGCG
CGCTTGTCGCGATGCAACGATAGGGTCGACACCGGGGGCTCGCGTGGGGA
GCTCGTTCCCTAGAGGAAACTGTGAATCATTTAGGTCTGCGCCGGTACCG
TGTTTTGGATTTCTGGCTCTCCTCGCTCTTCTTGTCGGTCTCATCCTGCT
CCGTTGCTGTAGGACAAATATTTTGGCGACATCAGACCGAACAACGCCCG
CTCAGCGAAAGGCGCCTTGAATTCCTTGGTCCGAATGATGTTCGCTCGAT
CTCCTTGAGACGTCTCTGGTTCCCGGCCTTGGGGCCACGGGAGTTAGAGC
ATCGCAAGTGCTCGAAAGTGCGAGGAAACCGCGCGCACCACCGCAACGCT
CGCAAACGCGTGGCTAGCGCCGTTGGGCATCTTGTCGTTCTCGTCTAAAG
GCTTGAAGCATTTGGATCCAGCCCCCTCCTGACTGGTCCCTTCCTGACCC
CCTTATCCCTTTCTTCTCGCTCCCTTCTTTCCCCCCCCTACCCAATTCTC
TCTCATATCGGTGAACTTGTTCTGACCCTGGGATCGTTCTCCGGGCAACA
CGAACAACCCACGCCGTCCTGGTGAATACCGCGCAACATTCGCGGGGCGG
GGGACCGAACGACGATTGACCGCGTCTATTCGCCCCCAATGACGCTCACG
ATCGTGCGACCAACAGCGCAATCACTGGTACCTGAACAAGACGCTCAAGA
TCGACCGGCAAGACCGGGATGAATTAGGGCCCCAGGGAGACAGAAAAGGG
CTAAAGGGAGGTTGGTATGGGGCGCGCAATGGCGGGTTCGACGTGTAGCC
ACAACCGCGGTGGCTCCAGTGCGTGCGTTTTGGTCTCGGTTTTCTTGATC
CTTGAAGGCATTAGTCCCGATTGCCTTTCACACCTTGTGGACAAGATGGA
CGTTCCGGTGGGCAGAGCGTGTGAGCGTGTTTGTATTCAATAGTTGTTAG
GATCGACCGCGCTTGCCGGCTGACTGCTTACACGATGCACCATCAGCGGA
AGGTGAGGGTGTTTGGATTCCGGCGCAGGTGTTCGAAGGCAGGGGGGAGG
GGCGGTGGGGAGAGAGCGGGGGAGAGCAGCGCGGGGGCGAGCGGTGACTT
TCATTCTGCGCCGTTCAGGAAGGCAGACGTTGGCACGGCGTCCTCCCCCC
TCGTTTGTAGCGACCTGCCGTGTGACCGTTACTTTCCATGAGTACGTGTG
CCAGTGTCAGCGGGCCGAAAGCTCTCTGCGCGCTCATTTTTGATGCGGCT
GGCTGCGTGTTGCAAGGCGTGAGAGTCAGAAGTCGGTGTTTCGCGCAAGG
TAGGAGCAAGGTCAGGAACCAGGACAAACTCGCCCGCCCCCCTGCCTCGT
CGGCCTCGAGTGCTTTCGCGCCCGCGCCCGTTTTTGGATGGTGTCGCCGT
TCGTGCCCACTGTGGCCCCGCGTGTTCGCTTGGCGACCCCCGTGCCGTAA
ATCCACTCTCCGCTGCTTGAACCCCTTGATCATAAGGGCATCTCGTTCTG
AGCTGCACTGTAATATTTTGTGTGTTGAACCGGGCTGCTTTCGCGAATGT
CCAAGATGGGCGGCGTAGGATCAAGGCGCTACCGTGGTGATTTTGAGACG
TCGCATAAAGCATGGTCAGCCCGGCCTTTTGTTGTGTGTGTGGAAGCCCG
TCGTGGAAATGTGGTACCCATTAACCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig9:356470..359696-

>mRNA_P-fluviatile_contig9.15039.1 ID=mRNA_P-fluviatile_contig9.15039.1|Name=mRNA_P-fluviatile_contig9.15039.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=816bp|location=Sequence derived from alignment at P-fluviatile_contig9:356470..359696- (Porterinema fluviatile SAG_2381)
ATGGAAGAAATCGGACAGTATTACAGCCACCAGCAGCGGCACCAGGAGCA
GCAGCAGCAGCGCGCGCTCTTCGAGCTGCTCGGGGTGAGTGAGGACGCAG
GGGTCTACGTCCTCATCGCCGGGCTGGTACTGGTAGGACTGACCGTCATC
GCATGCTGCTACTGCAAGGTATACGACCCGCTGCGTTTGTGGTGCCTCCG
GATGCACAAGAAGTGGTGCACGAGGAAACCAAGGCCACCAGCAGGACCAC
CGAAAGACGGCCCGTCGACGCCAGAGATGGAAGAAATCGGACAGTATTAC
AGCCACCAGCAGCGGCACCAGGAGCAGCAGCAGCAGCGCGCGCTCTTCGA
GCTGCTCGGGGTGAGTGAGGACGCAGGGGTCTACGTCCTCATCGCCGGGC
TGGTACTGGTAGGACTGACCGTCATCGCATGCTGCTACTGCAAGGTATAC
GACCCGCTGCGTTTGTGGTGCCTCCGGATGCACAAGAAGTGGTGCACGAG
GAAACCAAGGCCACCAGCAGGACCACCGAAAGACGGCCCGTCGACGCCAG
AGCGCAATCACTGGTACCTGAACAAGACGCTCAAGATCGACCGGCAAGAC
CGGGATGAATTAGGGCCCCAGGGAGACAGAAAAGGGCTAAAGGGAGGTTG
GTATGGGGCGCGCAATGGCGGGTTCGACGTGTAGCGCAATCACTGGTACC
TGAACAAGACGCTCAAGATCGACCGGCAAGACCGGGATGAATTAGGGCCC
CAGGGAGACAGAAAAGGGCTAAAGGGAGGTTGGTATGGGGCGCGCAATGG
CGGGTTCGACGTGTAG
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