mRNA_P-fluviatile_contig9.15032.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15032.1
Unique NamemRNA_P-fluviatile_contig9.15032.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig9.15032.1 vs. uniprot
Match: A0A6H5KIJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ2_9PHAE)

HSP 1 Score: 356 bits (914), Expect = 6.990e-116
Identity = 223/315 (70.79%), Postives = 240/315 (76.19%), Query Frame = 3 
Query:    3 ISVPPALETALRAVVRDVDGVDADLRGKISDCLPSIEGRDQQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAARVTVTPALLARALPHIRRLMGRGQGE-------SAQGTLGLLRGGGLVFPDARAAAAASMKQSEEKRAYNERRDRLLLLQEQKEYQRMTSNIQRAPRETVRDIQASFKFQAGMGANMVLAVLTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLAAARQDAEEKHTAVGVHRLAPRTGEPAGGRGVLD-----SGGGGRKEGGEYELVSTREED 911
            I+VPPALE+ALRAVVRD+DGVD+DLR KIS+ LP+IE ++Q A  XXXXXXXX                            ARVT+ PA LARALPHIRRLM RG GE       S  G L LL+GGGLVFPDAR AA+A+MK  EEKRAY ERRDRLLLL+EQKEYQRM  NIQRAPRETVRDIQASFKFQ GMGANMV+AV TTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVL  AR+DAEE HTAVGVHRLAPR GEP GGRG L+     S   GR+  GEYELV TR ED
Sbjct:   33 IAVPPALESALRAVVRDLDGVDSDLREKISERLPTIEDQEQAAAAXXXXXXXXPEEAESAPAGGARA------------GGARVTLNPATLARALPHIRRLMARGSGEGGDGHAASLGGLLELLQGGGLVFPDARGAASAAMKHGEEKRAYQERRDRLLLLREQKEYQRMIDNIQRAPRETVRDIQASFKFQVGMGANMVVAVFTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLEDARRDAEESHTAVGVHRLAPRPGEPMGGRGTLEQNRTSSSRRGRE--GEYELVPTRGED 333
[Close]
BLAST of mRNA_P-fluviatile_contig9.15032.1 vs. uniprot
Match: D8LUD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUD3_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 4.660e-71
Identity = 131/159 (82.39%), Postives = 137/159 (86.16%), Query Frame = 3 
Query:  306 MGRGQGE-------SAQGTLGLLRGGGLVFPDARAAAAASMKQSEEKRAYNERRDRLLLLQEQKEYQRMTSNIQRAPRETVRDIQASFKFQAGMGANMVLAVLTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLAAARQ 761
            M RG GE       S  G LGLL+GGGLVFPDAR AA+A+MK  EEKRAY ERRDRLLLL+EQKEYQRM  NIQRAPRETVRDIQASFKFQ GMGANMV+AV TTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVL  AR+
Sbjct:    1 MARGSGEGGDGHAASVGGLLGLLQGGGLVFPDARGAASAAMKHGEEKRAYQERRDRLLLLREQKEYQRMIDNIQRAPRETVRDIQASFKFQVGMGANMVVAVFTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLEDARR 159
[Close]
BLAST of mRNA_P-fluviatile_contig9.15032.1 vs. uniprot
Match: A0A836CG91_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG91_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.830e-22
Identity = 69/144 (47.92%), Postives = 94/144 (65.28%), Query Frame = 3 
Query:  348 LLRGGGLVFPDARAAAAASMKQSEEKRAYNERRDRLLLLQEQKEYQRMTSNIQ--RAPRETVRDIQASFKFQAGMGANMVLAVLTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEV--LAAARQDA 767
            LLRGGGL+FP++ AA  A+  +  +   + +RR  L L  E++EY+RMT++I+  R  R    DIQ + KFQA +GANMVLA LT F + YW SK+ V  + +HR+  GLVGA  I +VE+LVFV R+ +ADE    AA R  A
Sbjct:    9 LLRGGGLIFPESVAAREATKHRDAQ---FAQRRQHLELAHEEREYERMTASIRGPRRDRHGPSDIQVTLKFQAAVGANMVLAGLTMFGLCYWVSKYFVSRD-AHRMAAGLVGAFAITVVEMLVFVIRASRADEARDYAARRSSA 148
[Close]
BLAST of mRNA_P-fluviatile_contig9.15032.1 vs. uniprot
Match: A0A067BM81_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BM81_SAPPC)

HSP 1 Score: 61.6 bits (148), Expect = 1.820e-7
Identity = 46/136 (33.82%), Postives = 79/136 (58.09%), Query Frame = 3 
Query:  387 AAAAASMKQSEEKRAY-NERRDRLLLLQEQKEYQRMTSNIQRAPRETVRDIQASFKFQA---GMGANMVLAVLTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLAAARQDAEEKHT 782
            A   AS   S+EK+ Y  +RR  L   QE+K Y +M   ++R   ++  D+Q   K  +    +GANM+  + T F ++Y+ ++  V DN++ RL++GL   + +M+VE+++++TRS K +E+  A RQ   E  T
Sbjct:   42 ATPVASAVASKEKQTYLAKRRQYLQRRQEEKSYNQMLGKLERPKADS--DMQREMKSVSQHLSIGANMIAGMATAFFVAYYIARS-VTDNETSRLLMGLAATIAMMVVEMVLYITRSTKQEEL--ARRQRKSEGRT 172
[Close]
BLAST of mRNA_P-fluviatile_contig9.15032.1 vs. uniprot
Match: A0A0P1A7H8_PLAHL (ATPase, vacuolar ER assembly factor, Vma12 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A7H8_PLAHL)

HSP 1 Score: 62.0 bits (149), Expect = 2.950e-7
Identity = 37/102 (36.27%), Postives = 65/102 (63.73%), Query Frame = 3 
Query:  441 RRDRLLLLQEQKEYQRMTSNIQ-RAPRETVRDIQASFKFQAGMGANMVLAVLTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEV 743
            RR +L  L E+  Y  M  N++ R+  + +   Q + +    +GANMV+A LT FI  Y+ ++ +   N++ RLV GLVGA+F+M++E+++F+TR+ K + +
Sbjct:  106 RRRKLQRLDEEMRYSSMVRNVKTRSVDKELLHHQTNIRQHLSIGANMVMARLTAFIAVYFLARNLT-QNETTRLVAGLVGAIFMMIIEMILFITRAAKIESI 206
[Close]
BLAST of mRNA_P-fluviatile_contig9.15032.1 vs. uniprot
Match: K3WIG7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WIG7_GLOUD)

HSP 1 Score: 61.2 bits (147), Expect = 5.540e-7
Identity = 40/120 (33.33%), Postives = 72/120 (60.00%), Query Frame = 3 
Query:  390 AAAASMKQSEEKRAYNERR-DRLLLLQEQKEYQRMTSNIQRAPRET-VRDIQASFKFQAGMGANMVLAVLTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEV 743
            A+ +  K ++E  AY ERR  +LL L E+  Y R+  N+Q+   +      Q S +    +GANM+ A +T F+  Y  ++ +  DN++ R+++GL GA+ +M +E+++F+TRS K + +
Sbjct:   89 ASVSESKGAKEHSAYLERRRKKLLRLDEEMRYGRLVHNVQKKSNQVEFAQHQKSVQQHLSIGANMIAARVTAFVAMYILARTLT-DNETTRVILGLAGAIGMMFIEMVLFITRSAKYEVI 207
[Close]
BLAST of mRNA_P-fluviatile_contig9.15032.1 vs. uniprot
Match: A0A024TYG1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TYG1_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 6.080e-7
Identity = 36/110 (32.73%), Postives = 67/110 (60.91%), Query Frame = 3 
Query:  441 RRDRLLLLQEQKEYQRMTSNIQRAPRETVRDIQASFKF---QAGMGANMVLAVLTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLAAARQ 761
            RR  L  +QE+KEY +M   + +  R++  ++Q   K       +G NM+ A+ T F ++Y+ S+  V DN++ RL+ GL GA+ +M+VE+++++ R+ K +E+    R+
Sbjct:   62 RRQYLQRVQEEKEYNKMLGKLSKPKRDS--EMQKEMKSVTQHVSIGINMIAAMATAFFVAYYISRT-VTDNETTRLLAGLAGAISMMMVEMVLYMARATKQEELARIMRK 168
[Close]
BLAST of mRNA_P-fluviatile_contig9.15032.1 vs. uniprot
Match: A0A5D6XW23_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XW23_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 9.680e-7
Identity = 46/127 (36.22%), Postives = 74/127 (58.27%), Query Frame = 3 
Query:  357 GGGLVFPDARAAAAASMKQSEEKRAYNE-RRDRLLLLQEQKEYQRMTSNIQ-RAPRETVRDIQASFKFQAGMGANMVLAVLTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLK 731
            G G    DA  AAA        K AY E RR +L  L E+  Y R+  N++ +     +   Q S +    +GANMV+A +T FI  Y  ++ ++ D+++ R+VIGLVGA+ +M++E+++F+TR+ K
Sbjct:   83 GDGETEEDATEAAA--------KDAYLEQRRRKLRRLDEEMRYGRLVHNVKSKTQAAELEQFQTSTRQHLSIGANMVMARVTAFIALYMVAR-VLTDSETMRVVIGLVGAIVMMVIEMVLFITRAAK 200
[Close]
BLAST of mRNA_P-fluviatile_contig9.15032.1 vs. uniprot
Match: A0A1V9Y9U8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y9U8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.070e-6
Identity = 35/111 (31.53%), Postives = 65/111 (58.56%), Query Frame = 3 
Query:  438 ERRDRLLLLQEQKEYQRMTSNIQRAPRETVRDIQA-SFKFQAGMGANMVLAVLTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLAAARQDA 767
            +RR  L   QE+K Y +M   ++R   ++    +  S      +GANM+ A+ T F ++Y+ S+ +  DN++ RL++GL   + +M+VE+++F+ RS K +E+    R+ A
Sbjct:   60 QRRQYLQRRQEEKTYNQMLGKLERPKADSAMQREMKSVSQHLSIGANMIAAMATAFFVAYYISRSLT-DNETTRLLVGLAATVAMMVVEMVLFIARSTKQEELARRQRKGA 169
[Close]
BLAST of mRNA_P-fluviatile_contig9.15032.1 vs. uniprot
Match: A0A6G0X2X7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X2X7_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.360e-6
Identity = 34/110 (30.91%), Postives = 66/110 (60.00%), Query Frame = 3 
Query:  441 RRDRLLLLQEQKEYQRMTSNIQRAPRETVRDIQASFKF---QAGMGANMVLAVLTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLAAARQ 761
            RR  L  +Q++KEY +M  +I +  R+   D+Q   K       +G NM+ A+ T F ++Y+ ++ +  D  + +L+ GL GA+ +M+VE+++++ R+ K +E+   AR+
Sbjct:   64 RRQYLQRIQDEKEYNQMLGSISKPKRD--HDMQKEMKSVTQHVSIGLNMIAAMATAFFVAYYVARTVTQDETT-KLLAGLAGAIAMMMVEMVLYMARATKQEELARIARK 170
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KIJ2_9PHAE6.990e-11670.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LUD3_ECTSI4.660e-7182.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CG91_9STRA1.830e-2247.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A067BM81_SAPPC1.820e-733.82Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A0P1A7H8_PLAHL2.950e-736.27ATPase, vacuolar ER assembly factor, Vma12 n=1 Tax... [more]
K3WIG7_GLOUD5.540e-733.33Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A024TYG1_9STRA6.080e-732.73Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A5D6XW23_9STRA9.680e-736.22Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A1V9Y9U8_9STRA2.070e-631.53Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6G0X2X7_9STRA5.360e-630.91Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:290439..295571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue1.5e-06
Seed eggNOG ortholog65071.PYU1_T004759
EggNOG free text desc.Endoplasmic reticulum-based factor for assembly of V-ATPase
EggNOG OGs1MGQI@121069,2CAH1@1,2SBI4@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionATPase, vacuolar ER assembly factor, Vma12
Ec32 orthologEc-14_004540.1
Exons6
Model size1665
Cds size651
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15032.1prot_P-fluviatile_contig9.15032.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 292453..294862 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817307.437374-UTR-P-fluviatile_contig9:290438..2904871622817307.437374-UTR-P-fluviatile_contig9:290438..290487Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 290439..290487 +
1693572008.850583-UTR-P-fluviatile_contig9:290438..2904871693572008.850583-UTR-P-fluviatile_contig9:290438..290487Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 290439..290487 +
1622817307.4481964-UTR-P-fluviatile_contig9:292196..2924521622817307.4481964-UTR-P-fluviatile_contig9:292196..292452Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 292197..292452 +
1693572008.8617518-UTR-P-fluviatile_contig9:292196..2924521693572008.8617518-UTR-P-fluviatile_contig9:292196..292452Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 292197..292452 +
1622817307.519513-UTR-P-fluviatile_contig9:294862..2955711622817307.519513-UTR-P-fluviatile_contig9:294862..295571Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 294863..295571 +
1693572008.9265819-UTR-P-fluviatile_contig9:294862..2955711693572008.9265819-UTR-P-fluviatile_contig9:294862..295571Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 294863..295571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817307.4617167-CDS-P-fluviatile_contig9:292452..2925661622817307.4617167-CDS-P-fluviatile_contig9:292452..292566Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 292453..292566 +
1693572008.871555-CDS-P-fluviatile_contig9:292452..2925661693572008.871555-CDS-P-fluviatile_contig9:292452..292566Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 292453..292566 +
1622817307.4729338-CDS-P-fluviatile_contig9:293119..2932081622817307.4729338-CDS-P-fluviatile_contig9:293119..293208Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 293120..293208 +
1693572008.882197-CDS-P-fluviatile_contig9:293119..2932081693572008.882197-CDS-P-fluviatile_contig9:293119..293208Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 293120..293208 +
1622817307.484177-CDS-P-fluviatile_contig9:293697..2938421622817307.484177-CDS-P-fluviatile_contig9:293697..293842Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 293698..293842 +
1693572008.8943229-CDS-P-fluviatile_contig9:293697..2938421693572008.8943229-CDS-P-fluviatile_contig9:293697..293842Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 293698..293842 +
1622817307.4965322-CDS-P-fluviatile_contig9:294245..2943531622817307.4965322-CDS-P-fluviatile_contig9:294245..294353Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 294246..294353 +
1693572008.9039998-CDS-P-fluviatile_contig9:294245..2943531693572008.9039998-CDS-P-fluviatile_contig9:294245..294353Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 294246..294353 +
1622817307.5078611-CDS-P-fluviatile_contig9:294667..2948621622817307.5078611-CDS-P-fluviatile_contig9:294667..294862Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 294668..294862 +
1693572008.9138818-CDS-P-fluviatile_contig9:294667..2948621693572008.9138818-CDS-P-fluviatile_contig9:294667..294862Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 294668..294862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15032.1

>prot_P-fluviatile_contig9.15032.1 ID=prot_P-fluviatile_contig9.15032.1|Name=mRNA_P-fluviatile_contig9.15032.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=217bp
MGRGQGESAQGTLGLLRGGGLVFPDARAAAAASMKQSEEKRAYNERRDRL
LLLQEQKEYQRMTSNIQRAPRETVRDIQASFKFQAGMGANMVLAVLTTFI
ISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLAAA
RQDAEEKHTAVGVHRLAPRTGEPAGGRGVLDSGGGGRKEGGEYELVSTRE
EDGETGGKPRGKGSGE*
back to top

mRNA from alignment at P-fluviatile_contig9:290439..295571+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15032.1 ID=mRNA_P-fluviatile_contig9.15032.1|Name=mRNA_P-fluviatile_contig9.15032.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5133bp|location=Sequence derived from alignment at P-fluviatile_contig9:290439..295571+ (Porterinema fluviatile SAG_2381)
TGATCTCGGTGCCCCCGGCGCTCGAGACTGCCTTGCGGGCAGTCGTAAGG
TGTGTTCGCTCATTCGCTTTTGTGTGCTTTGCGTGTGTTTGAAACAAATA
GCATTCGTAGATCGAGAAAACGCAGCCCGCTTCTACAGGGCTGTCTGATC
ACTCATGGGTTCTTTAAGGAACTTGTTGGGCTGACACACACACCTTCTCT
CGGAAGAGGGATGATCCGGCTACAAGGGGCGGAGCGGGACAACAGTTGAG
CGATACGATCGCGAGGAACACAAGTGCAGCTTTTGCCCCTCCTTCTGGCT
TTGTCCTCAGAACCACGCCGTTCCGTACGCCTGAATGCCTATTCCTTACA
GTCTCCGGCTACAGCACACGCGTTTCTCTCAATACTATCTGCTGCCGACC
GTAAACGGGATCCGGGGTCAAGGTCCTCAGCAAGCAAGGCAGACGCTGCG
CTGCCTTAAGACAATCTGTCACCCCAGTGTGCACGCCAGTGCGCGTGCAC
CGTCAAGCCTGCCTTTGATTTCGAGGCCTGCCTTCGAAGTACCACAGTAT
CCTTTACTCCTTGCCAGATACAGCCGTGTGGCGGAATAGATCTCTCTGAG
CGTCGCAATATGCGCACTGCCGATTGTCGCGCTCTCCCCTATGCCGATTG
TCAGCTCTCCCGTTGCCAAGCGGGATGACTTCAACCCCGAGGATTCGTGT
GCTCGTTGAAACATTCTTCACGGAGTGCAGCTGGCTCGTTATGCAGTGGC
GTCTATATTGAAAAAATCTATACTTGAGGAAGGGGAGAACACAAGAGTCA
AAGTCACGAACCCGCAAATTCAATGCCTTCTCATCGTTCGATCTTAGACA
AAGCTGGATACGGATTACATGCACAACGACAAATTTTGTCTCGTCGGACT
CTCCTTCCGTGTATCACAGCCGCTTCTGTAATGTTCTTCTCGGCGCGTGT
CCTGCGTAAAAAGCAAGCAATTATTTTCAAGAATATTTTCGTCCCCCACG
CCCCGACCGAAATATCACTCGATATTTTGAATCGGGGAGCATGTTGCCAG
GCAGGGGTATGGCGACGGGAGATGGCTGACGGCCAGCAACCCACTTACTG
CCACATACCTCTCTCACGTATGAACAGCAGCCAGTTTCAGTTGACCACGG
GGCCAGTGCCCCCGCCAAGCCTCTAGAGCTGCGAGTGCATTTTTTCTTAG
GTCCGGAAGTAAAGTAGCAATGGGATTGGTGGGGGAAAGGGAGCTATACA
TTTCGCAGCTCAACCACATCGCATGTGGTGGACGGAATAGCACCAATTTC
GCCAAATATTTTCCCCCGCTCGAGCCCGTCATTCGTGCTCCTTGTCAAAA
CAAGCAAGGACAGCCTTGTTCGTGTTTCTGCCGCGTCTGTATGCCGTGCC
TGCCAGCACATGCAATGTAGCGCGACACCCCTCGCGTTTCCCCGTCTGGA
ATTCCCCCTGGTTTGCGCTGCAATGCCAAATTTTGCTTTGATACAAAAAC
ATGGCTTCGGGCGCCAGTAGCGATCCCGCTACCGCAGGTGGTCTGTTTTG
TTTTCCTACGTTTTTCGATCTTTACGCGTCTGTTTATGTCTTGGTCCCGA
AGTTGTATCGCCGCGTGAATGCTTCTGCAGCAGGTTGTGCGCAGTACACA
TCTTCAAAGCCGAAAGATGAGCATTCTCTCTTTCTCTCTTTCTCTCTCTC
TCTCTTGCACGCCAACCCGCACGCAACACCCCCTTCCGGCGGTTATTGGT
GTGCGCAGAGACGTAGACGGCGTGGACGCCGACCTCCGCGGAAAGATATC
GGACTGCCTGCCGTCTATCGAGGGCCGAGATCAACAAGCTGCGGCGGCCA
CCGTGGTTCCTGGCAACGAAAACACCAGTAGAAGGGGTAGTGCCGAAGGA
GGTGCAGCGGCCGCCGCGGGGGAGGACGTCGCTTCGGCTGCGGCACCAGC
AGCAGCAAGGGTGACAGTTACCCCAGCGTTGCTAGCGAGGGCCCTACCCC
ATATCCGAAGGTTGATGGGGCGCGGCCAGGGGGAGTCGGCGCAGGGCACG
CTAGGGCTGCTGCGGGGCGGGGGGCTCGTTTTTCCTGATGCGCGAGCGGC
GGCGGCGGCGTCCATGAAGCAGAGCGAGGTGAGTGGGTGGGGGTTGGAAG
GGGGAGAGGGATTTGATGCACGATTGTCTTCAGGATTCGTGGAGGTTCTA
CCGGCGGATGTCCGTTCAAATGAGCGACGGTTCGGGGGGTGATGGACGCA
GTTTTTGCAGACTGACACTGAGGGCGATGGTGAGTGATGGTGATGTGCTG
AGGTGATATTTCTGCTTGTTGTAAGGTGAAGTGTGTTTAACGGCGCGCCT
TCGCCCCGAAAAAGGAGAGGAGCGGGAGAGGAGCGGAGTTCCACCGGAGT
GCTTGCGTTCGTTCGGGGGCTTCGTTTTCGTTCCAACCAAACGGGTAGCT
CGGGAGCCGGTGAAGCGGGACCCATGGACGGCAATGAAGACTCTTCTTAA
CTTTTCCAAGGAATGTGTACCTGGTAGTGTTTTGTGCGCACGCGCTATTT
GCGTTGCCTTCTTCTCGGACTTTGCGAACGGTGGTCACGTCATTTTCGCC
CTCAATCCGGCTGACCTCGGCGTGTGTAAACACTGTGTGTGCTTTGGTTT
GTACCCCTTCTGTACTTTTCGGGGGGAGCAGGAGAAGCGGGCGTACAATG
AAAGACGAGATCGACTGCTACTGCTGCAAGAGCAAAAGGAGTACCAACGC
ATGACTTCGAACATACAGAGGTGCGACGAGGGTGGGCCCGAGAAACCGGT
CCCGAGGCCGGGGTCAGCGAAGGAGATTGGGAAGACCGCCCCCCCTTCGT
TTTATCCGACTGCCTGCGAGGGGGTAGGCGGGCTGGTGTCTTCCCGCTCA
TTTGCTGTTTCTTGTGCAAAGGGGTCTGCTTCGTATCGGTTGCCCTCAAC
CCCTTTTCAGATGTCTTGTTTCGCATAATGGCACGCACTGAACCAATGGA
TCAGTTGCCGATACAAGAGGTAGCGCTTTGTACGCATAAGTGTCGGGGCC
AGTCGTGCTGTGCGGTGGCTGCGCAAGTCAACGTGGGCAGTTGAAGTGAT
TTTGCGATGTGGACACCCCCGTGGACATGTTCAAATCCGCATGATATGGT
TCAACCCGGAGGAGTTGGTGCCAAAGTTGACGTTCGAGTCTTCCGAAATT
CGCACTACATGCACGCGAAATGATGCGACGTTGACCCTATACGAATGCGC
GTTTTCCAGAGCCCCGCGGGAGACCGTCCGCGATATCCAGGCGTCTTTCA
AGTTTCAGGCGGGTATGGGGGCCAATATGGTGTTGGCGGTGTTAACGACC
TTCATAATCAGCTACTGGGCAAGCAAATTCATTGTCGGAGACAACAAGTC
GCACGTGAGAAAATCGGTTTTAAGCGGGAGAAAAGATAAGTTGACGCGGG
TGAACGAATGGAAGGTGATCTCTGGTGCGTCATTCAACTCGTGCCAAGCA
AGTTTCCTTGATTAGCTCTAACGCGTTTGCTGTAGTGGCGTAAGAGTGTC
ATGAAAGTGTTTGGGGAAAGTCGAGACGTACGCGGATGGAAAGACCGCGC
CCAGTACGTGTCCCAGTCAACGCACCAACCAGCATGTACCCCAGTCGCTG
CAACTTGGCTCTTCCTACCTCGCCTGCGCGCCTCTCACCCCTCTCGCGAT
TTTTTCCGCCCCCGTTCCATTTCGGCGGACTGCCTTTATCCATTCGCCGA
CATTCGCTCACCCGCCCGGCCGTCCACATTGCGGCGCCGGCCGTCCTGCC
CTGATAGCGGCTGGTTATTGGTCTCGTGGGCGCGATGTTCATCATGCTGG
TGGAGCTTCTGGTGTTCGTGACGCGATCGCTCAAAGCGGACGAAGTCTTG
GCGGCCGCGCGACAAGTGAGCATCCAAACGTGAAGGATGGTGCTGTAGTC
GCTACCACCGCCGCCGTCATTGGTGCTTCGGGCAATCTGCGACCGCCCTT
ACGTGTGTGCCTGTCTGCCTGCCTGCTTGCCCGTGCTTCGGCAGTCCAAA
GCTTTCCGATGATTTTGCACTCGTCCGGTGTGTTTTTGTTGTGGCGGAAC
CGACGCGCCCCACTAGTTCGAGAATGTCCCTGGCCCACCCCCCGCGATCA
GATGCGTCTCTCCGAGAAACTGTTCGTCACAGACTTTCCTTGCTCACGGC
GGCGACCTCACTCCACCGTTGTCCCGCAGGACGCCGAGGAGAAGCACACC
GCCGTCGGTGTACATAGACTGGCGCCGCGGACGGGGGAACCGGCGGGGGG
GAGAGGGGTGCTGGACAGCGGCGGTGGTGGCAGGAAGGAGGGCGGGGAAT
ACGAGCTGGTCTCGACCAGAGAGGAGGACGGAGAGACGGGCGGAAAGCCG
CGAGGGAAGGGGTCCGGAGAGTAGTCCACGGATAGAGCGGATCCAGTGGC
GTCCGCGTCATGTTTATACTGTTTTTCAATCTGTTCCTTCGTACCGTGTG
TGTTTGGGTTGTGGCTGCAATTGGCCGCTTTCGTTCCTCGACACGGAGGC
GAGAGGGCGGCAGGAGAGGCGGGTGCCGCCTGTCCGCTTTTAATAGCTGT
TCCGCGTCGAGCGAGCGGCATCTGGGCGACTTCAGGATATCAACATGGAG
GAGCGCGGCCGTCGTCTACCTCGTTCTGTTGGTGGTTGACCTTTGCTTGA
AGACGTTATCGATTAGCCAGGTGACATGTCTGTCCATGTACCAGCGTGGT
ACCCTGAGATTTGGGACGCATTTGCTGCCAATCTCTCCTTCTGGCTGCGA
GAAGGTGAAAGTCAGATTCCACGACGGTGTGCTCGCAAGCCGCTGGTTGA
TGGTTTGTTCAGACTGTCGCTGCGCACCCCCCACACACAATATATATACC
TGCGGCAGGGTGGGGAATCTGAGGCAACAACTGATGGTGATTAGGGGCGG
TGGCTGGCCTAGGGGTAACAAACTTGATTTTGTTGACATCGAACCCTCCG
GGCCTTCCTCTCTGTAAGGCTGTCCCGCCCTTACTCTTCAAGCCGTTTGC
GTGTGAGTTGAAACGGTTGTGAAGTTCGAAGCGGCGGACATGATGTAAAA
AGTGCGTGCCGCTCGGAAAAGCGTGCCCATTTC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig9:290439..295571+

>mRNA_P-fluviatile_contig9.15032.1 ID=mRNA_P-fluviatile_contig9.15032.1|Name=mRNA_P-fluviatile_contig9.15032.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1302bp|location=Sequence derived from alignment at P-fluviatile_contig9:290439..295571+ (Porterinema fluviatile SAG_2381)
ATGGGGCGCGGCCAGGGGGAGTCGGCGCAGGGCACGCTAGGGCTGCTGCG
GGGCGGGGGGCTCGTTTTTCCTGATGCGCGAGCGGCGGCGGCGGCGTCCA
TGAAGCAGAGCGAGATGGGGCGCGGCCAGGGGGAGTCGGCGCAGGGCACG
CTAGGGCTGCTGCGGGGCGGGGGGCTCGTTTTTCCTGATGCGCGAGCGGC
GGCGGCGGCGTCCATGAAGCAGAGCGAGGAGAAGCGGGCGTACAATGAAA
GACGAGATCGACTGCTACTGCTGCAAGAGCAAAAGGAGTACCAACGCATG
ACTTCGAACATACAGAGGAGAAGCGGGCGTACAATGAAAGACGAGATCGA
CTGCTACTGCTGCAAGAGCAAAAGGAGTACCAACGCATGACTTCGAACAT
ACAGAGAGCCCCGCGGGAGACCGTCCGCGATATCCAGGCGTCTTTCAAGT
TTCAGGCGGGTATGGGGGCCAATATGGTGTTGGCGGTGTTAACGACCTTC
ATAATCAGCTACTGGGCAAGCAAATTCATTGTCGGAGACAACAAGTCGCA
CAGCCCCGCGGGAGACCGTCCGCGATATCCAGGCGTCTTTCAAGTTTCAG
GCGGGTATGGGGGCCAATATGGTGTTGGCGGTGTTAACGACCTTCATAAT
CAGCTACTGGGCAAGCAAATTCATTGTCGGAGACAACAAGTCGCACCGGC
TGGTTATTGGTCTCGTGGGCGCGATGTTCATCATGCTGGTGGAGCTTCTG
GTGTTCGTGACGCGATCGCTCAAAGCGGACGAAGTCTTGGCGGCCGCGCG
ACAACGGCTGGTTATTGGTCTCGTGGGCGCGATGTTCATCATGCTGGTGG
AGCTTCTGGTGTTCGTGACGCGATCGCTCAAAGCGGACGAAGTCTTGGCG
GCCGCGCGACAAGACGCCGAGGAGAAGCACACCGCCGTCGGTGTACATAG
ACTGGCGCCGCGGACGGGGGAACCGGCGGGGGGGAGAGGGGTGCTGGACA
GCGGCGGTGGTGGCAGGAAGGAGGGCGGGGAATACGAGCTGGTCTCGACC
AGAGAGGAGGACGGAGAGACGGGCGGAAAGCCGCGAGGGAAGGGGTCCGG
AGAGTAGGACGCCGAGGAGAAGCACACCGCCGTCGGTGTACATAGACTGG
CGCCGCGGACGGGGGAACCGGCGGGGGGGAGAGGGGTGCTGGACAGCGGC
GGTGGTGGCAGGAAGGAGGGCGGGGAATACGAGCTGGTCTCGACCAGAGA
GGAGGACGGAGAGACGGGCGGAAAGCCGCGAGGGAAGGGGTCCGGAGAGT
AG
back to top