mRNA_P-fluviatile_contig9.15025.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15025.1
Unique NamemRNA_P-fluviatile_contig9.15025.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig9.15025.1 vs. uniprot
Match: D7G2T1_ECTSI (Putative transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T1_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 9.380e-28
Identity = 58/118 (49.15%), Postives = 78/118 (66.10%), Query Frame = 2 
Query:    5 MVGLAVIVAACGTAADGKLKTKWLLVLGVPTMVTAIIYAVQFPSKFDGFSSAEHAPLTNWSGASFGLVDSEELWRAISHHWFYVVRISFSVVISVSSVLLVCIDAVCLEKIHAQLKSS 358
            +VG  +I AACG AA  K   KW+ VLGVP ++T  IYAV   SKF G+S A+H PL+NW   +FG ++  EL      +WFY+ R   SV I+VSS+LL+ IDAVCLE +  ++KS+
Sbjct:  141 IVGFGIITAACGKAAPEKQLKKWMHVLGVPMVITVAIYAVLDRSKFQGYSLADHPPLSNWGMGAFGTINFSELRETPRKYWFYISRTFLSVNINVSSILLILIDAVCLEDVRTKVKST 258
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2T1_ECTSI9.380e-2849.15Putative transporter n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:238805..239385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size364
Cds size360
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15025.1prot_P-fluviatile_contig9.15025.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 238809..239385 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817306.563514-UTR-P-fluviatile_contig9:238804..2388081622817306.563514-UTR-P-fluviatile_contig9:238804..238808Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 238805..238808 +
1693572005.8928156-UTR-P-fluviatile_contig9:238804..2388081693572005.8928156-UTR-P-fluviatile_contig9:238804..238808Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 238805..238808 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817306.5741732-CDS-P-fluviatile_contig9:238808..2391351622817306.5741732-CDS-P-fluviatile_contig9:238808..239135Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 238809..239135 +
1693572005.9028034-CDS-P-fluviatile_contig9:238808..2391351693572005.9028034-CDS-P-fluviatile_contig9:238808..239135Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 238809..239135 +
1622817306.5854635-CDS-P-fluviatile_contig9:239352..2393851622817306.5854635-CDS-P-fluviatile_contig9:239352..239385Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 239353..239385 +
1693572005.9119446-CDS-P-fluviatile_contig9:239352..2393851693572005.9119446-CDS-P-fluviatile_contig9:239352..239385Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 239353..239385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15025.1

>prot_P-fluviatile_contig9.15025.1 ID=prot_P-fluviatile_contig9.15025.1|Name=mRNA_P-fluviatile_contig9.15025.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=120bp
MVGLAVIVAACGTAADGKLKTKWLLVLGVPTMVTAIIYAVQFPSKFDGFS
SAEHAPLTNWSGASFGLVDSEELWRAISHHWFYVVRISFSVVISVSSVLL
VCIDAVCLEKIHAQLKSSAG
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mRNA from alignment at P-fluviatile_contig9:238805..239385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15025.1 ID=mRNA_P-fluviatile_contig9.15025.1|Name=mRNA_P-fluviatile_contig9.15025.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=581bp|location=Sequence derived from alignment at P-fluviatile_contig9:238805..239385+ (Porterinema fluviatile SAG_2381)
GCAGATGGTCGGACTTGCCGTTATTGTGGCCGCATGCGGTACAGCTGCCG
ACGGAAAATTGAAGACGAAGTGGTTGCTCGTCCTCGGCGTCCCGACGATG
GTTACCGCTATCATATACGCGGTTCAATTCCCGTCGAAGTTCGACGGGTT
CTCCTCTGCCGAACACGCCCCTCTGACGAACTGGAGCGGTGCAAGCTTCG
GGCTTGTGGATTCCGAGGAGCTGTGGCGAGCAATAAGTCACCACTGGTTC
TACGTCGTCCGAATTTCCTTCAGCGTTGTCATCAGCGTTTCCAGCGTGCT
GCTCGTTTGCATCGACGCGGTCTGCCTTGAGGTGGGCTTGAGATCTTTAA
GCAAGCACCTGACAGTATCGAAGGATATTGTAAAGATAAGTAATCAAGTT
CAATAACGAGTGTAAGCAGTACTGGTATGGGGCTCCAATTACACCGTGTG
CACCTGGTGTCGAGAGTTTTCGGGCTATTAGTGATGCCGCATCCTTTTGC
GCTTTCTCATATCTTCCCGCAACGGCATCTTTCCTGTTCTGTCCTCAGAA
AATTCATGCCCAGTTGAAGTCGTCCGCCGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig9:238805..239385+

>mRNA_P-fluviatile_contig9.15025.1 ID=mRNA_P-fluviatile_contig9.15025.1|Name=mRNA_P-fluviatile_contig9.15025.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=720bp|location=Sequence derived from alignment at P-fluviatile_contig9:238805..239385+ (Porterinema fluviatile SAG_2381)
ATGGTCGGACTTGCCGTTATTGTGGCCGCATGCGGTACAGCTGCCGACGG
AAAATTGAAGACGAAGTGGTTGCTCGTCCTCGGCGTCCCGACGATGGTTA
CCGCTATCATATACGCGGTTCAATTCCCGTCGAAGTTCGACGGGTTCTCC
TCTGCCGAACACGCCCCTCTGACGAACTGGAGCGGTGCAAGCTTCGGGCT
TGTGGATTCCGAGGAGCTGTGGCGAGCAATAAGTCACCACTGGTTCTACG
TCGTCCGAATTTCCTTCAGCGTTGTCATCAGCGTTTCCAGCGTGCTGCTC
GTTTGCATCGACGCGGTCTGCCTTGAGATGGTCGGACTTGCCGTTATTGT
GGCCGCATGCGGTACAGCTGCCGACGGAAAATTGAAGACGAAGTGGTTGC
TCGTCCTCGGCGTCCCGACGATGGTTACCGCTATCATATACGCGGTTCAA
TTCCCGTCGAAGTTCGACGGGTTCTCCTCTGCCGAACACGCCCCTCTGAC
GAACTGGAGCGGTGCAAGCTTCGGGCTTGTGGATTCCGAGGAGCTGTGGC
GAGCAATAAGTCACCACTGGTTCTACGTCGTCCGAATTTCCTTCAGCGTT
GTCATCAGCGTTTCCAGCGTGCTGCTCGTTTGCATCGACGCGGTCTGCCT
TGAGAAAATTCATGCCCAGTTGAAGTCGTCCGCCGGCAAAATTCATGCCC
AGTTGAAGTCGTCCGCCGGC
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