mRNA_P-fluviatile_contig9.15023.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15023.1
Unique NamemRNA_P-fluviatile_contig9.15023.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig9.15023.1 vs. uniprot
Match: D7G6M0_ECTSI (Strictosidine synthase subfamily, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M0_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.160e-7
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 2 
Query:    2 VSAAGRAVGSTTGVDYGTRLLHECHEKAP 88
            VSAAGRAVGSTTGV+YGT  +HECHEK P
Sbjct:  106 VSAAGRAVGSTTGVEYGTSFMHECHEKVP 134
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BLAST of mRNA_P-fluviatile_contig9.15023.1 vs. uniprot
Match: A0A6H5KHN1_9PHAE (Str_synth domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN1_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.240e-6
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 2 
Query:    2 VSAAGRAVGSTTGVDYGTRLLHECHEKA 85
            VSAAGRAVGSTTG+DYGT L++ECHEKA
Sbjct:  106 VSAAGRAVGSTTGIDYGTSLMNECHEKA 133
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6M0_ECTSI1.160e-782.76Strictosidine synthase subfamily, putative n=1 Tax... [more]
A0A6H5KHN1_9PHAE1.240e-685.71Str_synth domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:209202..209900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size254
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817301.355645-CDS-P-fluviatile_contig9:209203..2093731622817301.355645-CDS-P-fluviatile_contig9:209203..209373Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 209204..209373 -
1693571995.2768657-CDS-P-fluviatile_contig9:209203..2093731693571995.2768657-CDS-P-fluviatile_contig9:209203..209373Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 209204..209373 -
1622817301.366774-CDS-P-fluviatile_contig9:209818..2099001622817301.366774-CDS-P-fluviatile_contig9:209818..209900Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 209819..209900 -
1693571995.2853637-CDS-P-fluviatile_contig9:209818..2099001693571995.2853637-CDS-P-fluviatile_contig9:209818..209900Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 209819..209900 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15023.1prot_P-fluviatile_contig9.15023.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 209204..209900 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15023.1

>prot_P-fluviatile_contig9.15023.1 ID=prot_P-fluviatile_contig9.15023.1|Name=mRNA_P-fluviatile_contig9.15023.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=84bp
SLRRGTGGWFYYGRRLRHSTPARVPREGTGMRRRLALHAAAALTPLATRE
ARKSERKGRGGRRAGGLQVQRASIAQQRRTVKTR
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mRNA from alignment at P-fluviatile_contig9:209202..209900-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15023.1 ID=mRNA_P-fluviatile_contig9.15023.1|Name=mRNA_P-fluviatile_contig9.15023.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=699bp|location=Sequence derived from alignment at P-fluviatile_contig9:209202..209900- (Porterinema fluviatile SAG_2381)
AGTCTCCGCCGCGGGACGGGCGGTTGGTTCTACTACGGGCGTAGACTACG
GCACTCGACTCCTGCACGAGTGCCACGAGAAGGTGGGTGTGACGACCCCC
GGCACATGGTGCTCGTGGATGTTTCGCCTTTGCTTTTGTCTGTTTCGCGT
GTGTCGAGGGACCGCAATCGGAAGCGGGGCCTTTTGCTGTCTGTGTGCAT
CCTTTTGTCGTCGTTACCGTTACCGTTGTTGTTGTTGATGATGATGATGT
TGAGTGGAGAGTGTTGCGCAGCGAGAAGCAGGCTTTTTTATTTTTACGGA
GGTGGGGGGCGCTTTTCGACTACGGCATGCGGTGCACGCGGCAAAAGCCT
AAGGCATGACACGAGCAAGAGGCTGGGCCGCGTGAAAGCCACGCGTGCGA
CCCTTTGCCCGTCGCGCGAAGTAGCATCGCCTTACCGGGCCTTCTGAACG
TTCCTCAGCTAGGCTTCGGTCTCTCGTACTCCTGAATGAATCAATTGTCT
CGGCGGCGGCTGCCTGGTTCGCCACAGGCACCGGGATGCGTCGGCGTCTC
GCGCTGCATGCCGCCGCCGCCCTCACTCCTTTGGCGACACGTGAAGCGAG
AAAGAGCGAACGGAAGGGACGTGGGGGCAGACGCGCGGGGGGGCTTCAGG
TCCAACGCGCCTCGATAGCACAGCAGAGACGGACGGTGAAGACGAGAGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig9:209202..209900-

>mRNA_P-fluviatile_contig9.15023.1 ID=mRNA_P-fluviatile_contig9.15023.1|Name=mRNA_P-fluviatile_contig9.15023.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=504bp|location=Sequence derived from alignment at P-fluviatile_contig9:209202..209900- (Porterinema fluviatile SAG_2381)
AGTCTCCGCCGCGGGACGGGCGGTTGGTTCTACTACGGGCGTAGACTACG
GCACTCGACTCCTGCACGAGTGCCACGAGAAGAGTCTCCGCCGCGGGACG
GGCGGTTGGTTCTACTACGGGCGTAGACTACGGCACTCGACTCCTGCACG
AGTGCCACGAGAAGGCACCGGGATGCGTCGGCGTCTCGCGCTGCATGCCG
CCGCCGCCCTCACTCCTTTGGCGACACGTGAAGCGAGAAAGAGCGAACGG
AAGGGACGTGGGGGCAGACGCGCGGGGGGGCTTCAGGTCCAACGCGCCTC
GATAGCACAGCAGAGACGGACGGTGAAGACGAGAGCACCGGGATGCGTCG
GCGTCTCGCGCTGCATGCCGCCGCCGCCCTCACTCCTTTGGCGACACGTG
AAGCGAGAAAGAGCGAACGGAAGGGACGTGGGGGCAGACGCGCGGGGGGG
CTTCAGGTCCAACGCGCCTCGATAGCACAGCAGAGACGGACGGTGAAGAC
GAGA
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