mRNA_P-fluviatile_contig9.15022.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15022.1
Unique NamemRNA_P-fluviatile_contig9.15022.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:205586..205927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size330
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817302.7030382-UTR-P-fluviatile_contig9:205585..2055971622817302.7030382-UTR-P-fluviatile_contig9:205585..205597Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 205586..205597 +
1693571999.4279315-UTR-P-fluviatile_contig9:205585..2055971693571999.4279315-UTR-P-fluviatile_contig9:205585..205597Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 205586..205597 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817302.7161894-CDS-P-fluviatile_contig9:205597..2059271622817302.7161894-CDS-P-fluviatile_contig9:205597..205927Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 205598..205927 +
1693571999.4528286-CDS-P-fluviatile_contig9:205597..2059271693571999.4528286-CDS-P-fluviatile_contig9:205597..205927Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 205598..205927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15022.1prot_P-fluviatile_contig9.15022.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 205598..205927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15022.1

>prot_P-fluviatile_contig9.15022.1 ID=prot_P-fluviatile_contig9.15022.1|Name=mRNA_P-fluviatile_contig9.15022.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=110bp
MDYLTCRALNIKRRSARQPSIPNTRFFGAQVSSDRAPSFLQIFRVCCTLT
ADSPPPPPDRHICLDWESFPNILSSSLSLPIESPFRFFSVFLPERGFVRR
SRPHLQGKV*
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mRNA from alignment at P-fluviatile_contig9:205586..205927+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15022.1 ID=mRNA_P-fluviatile_contig9.15022.1|Name=mRNA_P-fluviatile_contig9.15022.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=342bp|location=Sequence derived from alignment at P-fluviatile_contig9:205586..205927+ (Porterinema fluviatile SAG_2381)
GTTCGCTTGCCGATGGACTACTTGACCTGCAGGGCATTAAACATTAAACG
TCGATCTGCGCGCCAGCCTAGTATCCCAAACACACGCTTCTTCGGAGCTC
AAGTGTCATCTGACCGCGCGCCATCCTTTCTACAGATTTTCCGAGTCTGT
TGTACCCTGACTGCTGACTCTCCCCCGCCTCCACCCGACCGCCATATTTG
TCTCGATTGGGAGTCCTTCCCGAACATCCTTTCTAGTTCTCTCTCGCTGC
CAATCGAAAGCCCTTTTCGGTTCTTTAGTGTTTTTTTGCCCGAACGGGGT
TTCGTCCGCCGGTCGCGGCCGCACCTTCAGGGCAAGGTGTAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig9:205586..205927+

>mRNA_P-fluviatile_contig9.15022.1 ID=mRNA_P-fluviatile_contig9.15022.1|Name=mRNA_P-fluviatile_contig9.15022.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=660bp|location=Sequence derived from alignment at P-fluviatile_contig9:205586..205927+ (Porterinema fluviatile SAG_2381)
ATGGACTACTTGACCTGCAGGGCATTAAACATTAAACGTCGATCTGCGCG
CCAGCCTAGTATCCCAAACACACGCTTCTTCGGAGCTCAAGTGTCATCTG
ACCGCGCGCCATCCTTTCTACAGATTTTCCGAGTCTGTTGTACCCTGACT
GCTGACTCTCCCCCGCCTCCACCCGACCGCCATATTTGTCTCGATTGGGA
GTCCTTCCCGAACATCCTTTCTAGTTCTCTCTCGCTGCCAATCGAAAGCC
CTTTTCGGTTCTTTAGTGTTTTTTTGCCCGAACGGGGTTTCGTCCGCCGG
TCGCGGCCGCACCTTCAGGGCAAGGTGTAAATGGACTACTTGACCTGCAG
GGCATTAAACATTAAACGTCGATCTGCGCGCCAGCCTAGTATCCCAAACA
CACGCTTCTTCGGAGCTCAAGTGTCATCTGACCGCGCGCCATCCTTTCTA
CAGATTTTCCGAGTCTGTTGTACCCTGACTGCTGACTCTCCCCCGCCTCC
ACCCGACCGCCATATTTGTCTCGATTGGGAGTCCTTCCCGAACATCCTTT
CTAGTTCTCTCTCGCTGCCAATCGAAAGCCCTTTTCGGTTCTTTAGTGTT
TTTTTGCCCGAACGGGGTTTCGTCCGCCGGTCGCGGCCGCACCTTCAGGG
CAAGGTGTAA
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