mRNA_P-fluviatile_contig9.15014.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15014.1
Unique NamemRNA_P-fluviatile_contig9.15014.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:142857..143740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size885
Cds size702
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817302.660649-CDS-P-fluviatile_contig9:142856..1435581622817302.660649-CDS-P-fluviatile_contig9:142856..143558Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 142857..143558 +
1693571999.403241-CDS-P-fluviatile_contig9:142856..1435581693571999.403241-CDS-P-fluviatile_contig9:142856..143558Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 142857..143558 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817302.6723921-UTR-P-fluviatile_contig9:143558..1437401622817302.6723921-UTR-P-fluviatile_contig9:143558..143740Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 143559..143740 +
1693571999.4148657-UTR-P-fluviatile_contig9:143558..1437401693571999.4148657-UTR-P-fluviatile_contig9:143558..143740Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 143559..143740 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15014.1prot_P-fluviatile_contig9.15014.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 142857..143558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15014.1

>prot_P-fluviatile_contig9.15014.1 ID=prot_P-fluviatile_contig9.15014.1|Name=mRNA_P-fluviatile_contig9.15014.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=234bp
AGSTPEQKNLIHASLPPPWGPPSAGSCSPASGALETPPLSSGRTLPDGRV
GTIALCPVLVPAFRNRRWELPCKGAALPLPYVTDAGHFLLTNPGLPFSSP
PSPAVRSRFTSNCESESPSAHDPSTTTVVSSGNRPDPQTVHRSRAAATAL
CLLLSWAKGRDKRCLQLVEVERLPAPPPSHILVVGALLRRSPSSMEGRTP
KSLVSEKCLDPPTAPQLVNAADASAIILKDHRS*
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mRNA from alignment at P-fluviatile_contig9:142857..143740+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15014.1 ID=mRNA_P-fluviatile_contig9.15014.1|Name=mRNA_P-fluviatile_contig9.15014.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=884bp|location=Sequence derived from alignment at P-fluviatile_contig9:142857..143740+ (Porterinema fluviatile SAG_2381)
GCCGGTTCAACGCCAGAGCAGAAAAACCTGATACACGCGTCCTTGCCGCC
TCCATGGGGGCCGCCGTCCGCGGGATCCTGCTCTCCCGCCAGTGGTGCTC
TTGAAACACCCCCCCTATCGAGTGGGCGCACCCTTCCTGATGGCCGGGTA
GGAACCATCGCACTTTGTCCTGTGCTTGTGCCTGCTTTTCGCAACCGACG
ATGGGAGCTTCCATGCAAGGGGGCGGCTTTACCGTTGCCGTATGTGACGG
ATGCCGGGCATTTTTTGCTGACTAATCCCGGGCTGCCTTTCTCATCACCA
CCGTCGCCTGCTGTACGGTCACGGTTCACGAGTAACTGCGAATCCGAATC
GCCCTCCGCACACGATCCGAGCACAACAACAGTTGTAAGCTCAGGCAACC
GCCCTGATCCACAGACAGTCCATCGGTCACGAGCTGCGGCGACGGCGCTG
TGCCTGCTCCTTTCTTGGGCGAAGGGTAGGGACAAGCGTTGTCTGCAATT
GGTCGAGGTGGAACGACTACCAGCGCCGCCACCCAGCCATATTCTTGTCG
TAGGTGCTTTACTACGTCGGTCGCCATCTTCGATGGAGGGCAGGACGCCG
AAAAGTCTTGTGAGCGAGAAATGTCTCGATCCCCCGACGGCCCCACAACT
CGTCAATGCCGCCGATGCCTCCGCCATTATTCTGAAAGACCATCGATCTT
GAACTGCCGAAAGTTTTGTCGTTGAAGGAAGTGAGCGCTTGGTCGCTGAT
GACGCCCATTCAGTTCCATAGTTTCCCCACGGACCGTCGACGCACGCACC
ATCTCGAGGAGCGCTACCCGTGGTCTCGACGGGAGGCATGGCTGACGATT
TCTTCGACTGAAATCCCGTGGAAAAGCCTTGGTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig9:142857..143740+

>mRNA_P-fluviatile_contig9.15014.1 ID=mRNA_P-fluviatile_contig9.15014.1|Name=mRNA_P-fluviatile_contig9.15014.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1404bp|location=Sequence derived from alignment at P-fluviatile_contig9:142857..143740+ (Porterinema fluviatile SAG_2381)
GCCGGTTCAACGCCAGAGCAGAAAAACCTGATACACGCGTCCTTGCCGCC
TCCATGGGGGCCGCCGTCCGCGGGATCCTGCTCTCCCGCCAGTGGTGCTC
TTGAAACACCCCCCCTATCGAGTGGGCGCACCCTTCCTGATGGCCGGGTA
GGAACCATCGCACTTTGTCCTGTGCTTGTGCCTGCTTTTCGCAACCGACG
ATGGGAGCTTCCATGCAAGGGGGCGGCTTTACCGTTGCCGTATGTGACGG
ATGCCGGGCATTTTTTGCTGACTAATCCCGGGCTGCCTTTCTCATCACCA
CCGTCGCCTGCTGTACGGTCACGGTTCACGAGTAACTGCGAATCCGAATC
GCCCTCCGCACACGATCCGAGCACAACAACAGTTGTAAGCTCAGGCAACC
GCCCTGATCCACAGACAGTCCATCGGTCACGAGCTGCGGCGACGGCGCTG
TGCCTGCTCCTTTCTTGGGCGAAGGGTAGGGACAAGCGTTGTCTGCAATT
GGTCGAGGTGGAACGACTACCAGCGCCGCCACCCAGCCATATTCTTGTCG
TAGGTGCTTTACTACGTCGGTCGCCATCTTCGATGGAGGGCAGGACGCCG
AAAAGTCTTGTGAGCGAGAAATGTCTCGATCCCCCGACGGCCCCACAACT
CGTCAATGCCGCCGATGCCTCCGCCATTATTCTGAAAGACCATCGATCTT
GAGCCGGTTCAACGCCAGAGCAGAAAAACCTGATACACGCGTCCTTGCCG
CCTCCATGGGGGCCGCCGTCCGCGGGATCCTGCTCTCCCGCCAGTGGTGC
TCTTGAAACACCCCCCCTATCGAGTGGGCGCACCCTTCCTGATGGCCGGG
TAGGAACCATCGCACTTTGTCCTGTGCTTGTGCCTGCTTTTCGCAACCGA
CGATGGGAGCTTCCATGCAAGGGGGCGGCTTTACCGTTGCCGTATGTGAC
GGATGCCGGGCATTTTTTGCTGACTAATCCCGGGCTGCCTTTCTCATCAC
CACCGTCGCCTGCTGTACGGTCACGGTTCACGAGTAACTGCGAATCCGAA
TCGCCCTCCGCACACGATCCGAGCACAACAACAGTTGTAAGCTCAGGCAA
CCGCCCTGATCCACAGACAGTCCATCGGTCACGAGCTGCGGCGACGGCGC
TGTGCCTGCTCCTTTCTTGGGCGAAGGGTAGGGACAAGCGTTGTCTGCAA
TTGGTCGAGGTGGAACGACTACCAGCGCCGCCACCCAGCCATATTCTTGT
CGTAGGTGCTTTACTACGTCGGTCGCCATCTTCGATGGAGGGCAGGACGC
CGAAAAGTCTTGTGAGCGAGAAATGTCTCGATCCCCCGACGGCCCCACAA
CTCGTCAATGCCGCCGATGCCTCCGCCATTATTCTGAAAGACCATCGATC
TTGA
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