mRNA_P-fluviatile_contig89.14988.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig89.14988.1
Unique NamemRNA_P-fluviatile_contig89.14988.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig89.14988.1 vs. uniprot
Match: A0A2R4QPT8_9PHAE (Photosystem I reaction center subunit II n=4 Tax=Phaeophyceae TaxID=2870 RepID=A0A2R4QPT8_9PHAE)

HSP 1 Score: 259 bits (661), Expect = 1.420e-86
Identity = 121/132 (91.67%), Postives = 127/132 (96.21%), Query Frame = 2
Query:  119 MSIYPGQFMPTFGGSTGGWLRSAEFEEKYVITWNSKEEQLFEIPTGGTALMLLGQNLLYLARKEQCLALGTALRKLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNQGRMPVGKRDFSIGKNPNPASIKWK 514
            MSIYP ++MP FGGSTGGWLRSAEFEEKYVITWNS++EQLFE+PT GTALMLLGQNLLYLARKEQCLALGT LRKLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSN+GR PVGKRDFSIGKNPNPASIKWK
Sbjct:    1 MSIYPSKYMPIFGGSTGGWLRSAEFEEKYVITWNSEKEQLFEMPTAGTALMLLGQNLLYLARKEQCLALGTQLRKLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNEGRTPVGKRDFSIGKNPNPASIKWK 132          
BLAST of mRNA_P-fluviatile_contig89.14988.1 vs. uniprot
Match: A0A0S0GAH9_COSCS (Photosystem I reaction center subunit II n=44 Tax=Phaeophyceae TaxID=2870 RepID=A0A0S0GAH9_COSCS)

HSP 1 Score: 257 bits (656), Expect = 8.190e-86
Identity = 120/132 (90.91%), Postives = 125/132 (94.70%), Query Frame = 2
Query:  119 MSIYPGQFMPTFGGSTGGWLRSAEFEEKYVITWNSKEEQLFEIPTGGTALMLLGQNLLYLARKEQCLALGTALRKLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNQGRMPVGKRDFSIGKNPNPASIKWK 514
            MS+YP ++MP FGGSTGGWLRSAEFEEKYVITWNS  EQLFE+PT GTALMLLGQNLLYLARKEQCLALGT LRKLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSN+GR PVGKRDFSIGKNPNPASIKWK
Sbjct:    1 MSLYPSKYMPVFGGSTGGWLRSAEFEEKYVITWNSTTEQLFEMPTAGTALMLLGQNLLYLARKEQCLALGTQLRKLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNEGRTPVGKRDFSIGKNPNPASIKWK 132          
BLAST of mRNA_P-fluviatile_contig89.14988.1 vs. uniprot
Match: A0A8F0FAL2_9PHAE (Photosystem I reaction center subunit II n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAL2_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 4.340e-81
Identity = 114/132 (86.36%), Postives = 122/132 (92.42%), Query Frame = 2
Query:  119 MSIYPGQFMPTFGGSTGGWLRSAEFEEKYVITWNSKEEQLFEIPTGGTALMLLGQNLLYLARKEQCLALGTALRKLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNQGRMPVGKRDFSIGKNPNPASIKWK 514
            M+I+P ++ P FGGSTGGWLRSAEFEEKYVITWN+  EQLFE+PT GTALML GQNLLYLARKEQCLALGT LRKLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSN GR PVGK+DFSIGKNPNPASIKW+
Sbjct:    1 MAIFPSKYTPIFGGSTGGWLRSAEFEEKYVITWNAPTEQLFEMPTAGTALMLKGQNLLYLARKEQCLALGTQLRKLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNAGRTPVGKKDFSIGKNPNPASIKWQ 132          
BLAST of mRNA_P-fluviatile_contig89.14988.1 vs. uniprot
Match: A0A2I4Q2A8_9PHAE (Photosystem I reaction center subunit II n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2A8_9PHAE)

HSP 1 Score: 235 bits (600), Expect = 2.890e-77
Identity = 108/131 (82.44%), Postives = 119/131 (90.84%), Query Frame = 2
Query:  119 MSIYPGQFMPTFGGSTGGWLRSAEFEEKYVITWNSKEEQLFEIPTGGTALMLLGQNLLYLARKEQCLALGTALRKLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNQGRMPVGKRDFSIGKNPNPASIKW 511
            M ++P ++ PTFGGSTGGWLRSAE EEKYVITW S++E+ FE+PT G ALML GQNLLY+ARKEQCLALGT LR LKIKDYKIYRIFPGGEIQFLHPKDGVFPETSN GR+PVGKRDFSIGKNPNPAS+KW
Sbjct:    1 MVVFPLKYTPTFGGSTGGWLRSAECEEKYVITWTSEKEKFFEMPTAGAALMLAGQNLLYMARKEQCLALGTQLRTLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNAGRLPVGKRDFSIGKNPNPASVKW 131          
BLAST of mRNA_P-fluviatile_contig89.14988.1 vs. uniprot
Match: A0A8E5XRI2_9PHAE (Photosystem I reaction center subunit II n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRI2_9PHAE)

HSP 1 Score: 235 bits (600), Expect = 2.890e-77
Identity = 109/133 (81.95%), Postives = 122/133 (91.73%), Query Frame = 2
Query:  119 MSIYPGQFMPTFGGSTGGWLRSAEFEEKYVITWNSKEEQLFEIPTGGTALMLLGQNLLYLARKEQCLALGTALRKLK-IKDYKIYRIFPGGEIQFLHPKDGVFPETSNQGRMPVGKRDFSIGKNPNPASIKWK 514
            M+++P + +P FGGSTGGWLRSAE EEKY ITWNS +EQ+FE+PT G ALML G+NLLYLARKEQCLALGT LRK+K IKDYKIYRIFPGGE+QFLHPKDGVFPETSN+GRMPVGKRDFSIGKNPNPASIKW+
Sbjct:    1 MTVFPSKNVPLFGGSTGGWLRSAEVEEKYAITWNSPKEQIFEMPTAGAALMLQGENLLYLARKEQCLALGTQLRKVKKIKDYKIYRIFPGGEVQFLHPKDGVFPETSNEGRMPVGKRDFSIGKNPNPASIKWQ 133          
BLAST of mRNA_P-fluviatile_contig89.14988.1 vs. uniprot
Match: A0A8F0F7G4_9PHAE (Photosystem I reaction center subunit II n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7G4_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 2.910e-73
Identity = 105/128 (82.03%), Postives = 112/128 (87.50%), Query Frame = 2
Query:  131 PGQFMPTFGGSTGGWLRSAEFEEKYVITWNSKEEQLFEIPTGGTALMLLGQNLLYLARKEQCLALGTALRKLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNQGRMPVGKRDFSIGKNPNPASIKWK 514
            P Q+MP FGGSTGGWLRSAEFEEKYVITWNS +EQ FE+PT G ALMLLGQNLLYLARKEQCLALGT LR LKIKDYKIYRIFP GEIQFLHPKDGVFPE SN GR PVGKRDF+IG  P+P  +KW+
Sbjct:    5 PSQYMPVFGGSTGGWLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLALGTQLRTLKIKDYKIYRIFPSGEIQFLHPKDGVFPEISNIGRTPVGKRDFNIGLIPSPGELKWE 132          
BLAST of mRNA_P-fluviatile_contig89.14988.1 vs. uniprot
Match: A0A7S6U9W3_9STRA (Photosystem I reaction center subunit II n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9W3_9STRA)

HSP 1 Score: 216 bits (551), Expect = 1.050e-69
Identity = 96/131 (73.28%), Postives = 116/131 (88.55%), Query Frame = 2
Query:  119 MSIYPGQFMPTFGGSTGGWLRSAEFEEKYVITWNSKEEQLFEIPTGGTALMLLGQNLLYLARKEQCLALGTALRKLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNQGRMPVGKRDFSIGKNPNPASIKW 511
            M+ Y  Q+ P FGGSTGGWLR+AE EEKY ITWN+ +EQ+FE+PTGG A+ML+G+NLLYLARKEQCLALGT LR L+IK+Y+IYRIFPGGE+Q+LHPKDGVFPE  N GR+P+G +DFSIGKNPNPA+IK+
Sbjct:    1 MTFYLKQYTPIFGGSTGGWLRAAEVEEKYAITWNAPKEQVFEMPTGGAAVMLIGENLLYLARKEQCLALGTQLRSLRIKEYRIYRIFPGGEVQYLHPKDGVFPEKVNAGRIPIGTKDFSIGKNPNPATIKF 131          
BLAST of mRNA_P-fluviatile_contig89.14988.1 vs. uniprot
Match: B2XT55_HETAK (Photosystem I reaction center subunit II n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT55_HETAK)

HSP 1 Score: 208 bits (530), Expect = 1.600e-66
Identity = 95/124 (76.61%), Postives = 107/124 (86.29%), Query Frame = 2
Query:  140 FMPTFGGSTGGWLRSAEFEEKYVITWNSKEEQLFEIPTGGTALMLLGQNLLYLARKEQCLALGTALRKLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNQGRMPVGKRDFSIGKNPNPASIKW 511
            F P FGGSTGGWLR+AE EEKYVITW+S +EQLFE+PTGG A+ML G+NLLYLARKEQCLALGT LR  KI DYKIYR+FP GEIQ+LHPKDGVFPE  N GR+ VG R+FSIGKNPNP S+K+
Sbjct:    8 FSPIFGGSTGGWLRAAEIEEKYVITWSSSKEQLFEMPTGGAAIMLQGENLLYLARKEQCLALGTQLRSFKINDYKIYRLFPNGEIQYLHPKDGVFPEKVNPGRLAVGSRNFSIGKNPNPVSVKF 131          
BLAST of mRNA_P-fluviatile_contig89.14988.1 vs. uniprot
Match: UPI001EDDB867 (photosystem I reaction center subunit II (ferredoxin-binding) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=UPI001EDDB867)

HSP 1 Score: 206 bits (523), Expect = 1.860e-65
Identity = 95/126 (75.40%), Postives = 107/126 (84.92%), Query Frame = 2
Query:  146 PTFGGSTGGWLRSAEFEEKYVITWNSKEEQLFEIPTGGTALMLLGQNLLYLARKEQCLALGTALRKLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNQGRMPVGKRDFSIGKNPNPASIKWK*TN 523
            PTFGGSTGGWLRSAE EEKY ITWNS +EQ+FE+PTGG A+M  G+NLLYLARKEQCLALGT LR  KI +YKIYRIFP GE+QFLHPKDGVFPE +N GR+    R+FSIGKNPNPASIK+  T+
Sbjct:   10 PTFGGSTGGWLRSAEVEEKYAITWNSTKEQIFEMPTGGAAIMKTGENLLYLARKEQCLALGTQLRTFKINNYKIYRIFPSGEVQFLHPKDGVFPEKTNPGRIATNNRNFSIGKNPNPASIKFSGTS 135          
BLAST of mRNA_P-fluviatile_contig89.14988.1 vs. uniprot
Match: B7T226_VAULI (Photosystem I reaction center subunit II n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T226_VAULI)

HSP 1 Score: 203 bits (516), Expect = 2.170e-64
Identity = 94/131 (71.76%), Postives = 107/131 (81.68%), Query Frame = 2
Query:  119 MSIYPGQFMPTFGGSTGGWLRSAEFEEKYVITWNSKEEQLFEIPTGGTALMLLGQNLLYLARKEQCLALGTALRKLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNQGRMPVGKRDFSIGKNPNPASIKW 511
            M++    + P FGGSTGGWLR+AE EEKY ITW S +EQ FE+PTGG A+ML  QNLLYLARKEQCLALGT L+K KI DYKIYRIFP GE+QFLHPKDGVFPE  N GR+ VG R+FSIGKNPNP S+K+
Sbjct:    1 MNLNLKSYFPKFGGSTGGWLRAAEVEEKYAITWTSSKEQTFEMPTGGAAVMLNDQNLLYLARKEQCLALGTQLKKFKINDYKIYRIFPNGEVQFLHPKDGVFPEKVNVGRLAVGSRNFSIGKNPNPISVKF 131          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig89.14988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QPT8_9PHAE1.420e-8691.67Photosystem I reaction center subunit II n=4 Tax=P... [more]
A0A0S0GAH9_COSCS8.190e-8690.91Photosystem I reaction center subunit II n=44 Tax=... [more]
A0A8F0FAL2_9PHAE4.340e-8186.36Photosystem I reaction center subunit II n=1 Tax=D... [more]
A0A2I4Q2A8_9PHAE2.890e-7782.44Photosystem I reaction center subunit II n=1 Tax=D... [more]
A0A8E5XRI2_9PHAE2.890e-7781.95Photosystem I reaction center subunit II n=1 Tax=I... [more]
A0A8F0F7G4_9PHAE2.910e-7382.03Photosystem I reaction center subunit II n=1 Tax=P... [more]
A0A7S6U9W3_9STRA1.050e-6973.28Photosystem I reaction center subunit II n=1 Tax=S... [more]
B2XT55_HETAK1.600e-6676.61Photosystem I reaction center subunit II n=2 Tax=H... [more]
UPI001EDDB8671.860e-6575.40photosystem I reaction center subunit II (ferredox... [more]
B7T226_VAULI2.170e-6471.76Photosystem I reaction center subunit II n=1 Tax=V... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig89contigP-fluviatile_contig89:119716..120247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score259.2
Seed ortholog evalue1e-66
Seed eggNOG ortholog2880.D1J785
Preferred namepsaD
KEGG koko:K02692
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00163
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0010287,GO:0016020,GO:0019904,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.photosynthesis
EggNOG OGs28I81@1,2QQIC@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Hectar predicted targeting categoryother localisation
Exons1
Model size532
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig89.14988.1prot_P-fluviatile_contig89.14988.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig89 119834..120232 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817300.7426252-UTR-P-fluviatile_contig89:119715..1198331622817300.7426252-UTR-P-fluviatile_contig89:119715..119833Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 119716..119833 +
1693571985.644438-UTR-P-fluviatile_contig89:119715..1198331693571985.644438-UTR-P-fluviatile_contig89:119715..119833Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 119716..119833 +
1622817300.7660933-UTR-P-fluviatile_contig89:120232..1202471622817300.7660933-UTR-P-fluviatile_contig89:120232..120247Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 120233..120247 +
1693571985.6656072-UTR-P-fluviatile_contig89:120232..1202471693571985.6656072-UTR-P-fluviatile_contig89:120232..120247Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 120233..120247 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817300.7538497-CDS-P-fluviatile_contig89:119833..1202321622817300.7538497-CDS-P-fluviatile_contig89:119833..120232Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 119834..120232 +
1693571985.6564116-CDS-P-fluviatile_contig89:119833..1202321693571985.6564116-CDS-P-fluviatile_contig89:119833..120232Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 119834..120232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig89.14988.1

>prot_P-fluviatile_contig89.14988.1 ID=prot_P-fluviatile_contig89.14988.1|Name=mRNA_P-fluviatile_contig89.14988.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=133bp
MSIYPGQFMPTFGGSTGGWLRSAEFEEKYVITWNSKEEQLFEIPTGGTAL
MLLGQNLLYLARKEQCLALGTALRKLKIKDYKIYRIFPGGEIQFLHPKDG
VFPETSNQGRMPVGKRDFSIGKNPNPASIKWK*
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mRNA from alignment at P-fluviatile_contig89:119716..120247+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig89.14988.1 ID=mRNA_P-fluviatile_contig89.14988.1|Name=mRNA_P-fluviatile_contig89.14988.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=532bp|location=Sequence derived from alignment at P-fluviatile_contig89:119716..120247+ (Porterinema fluviatile SAG_2381)
GGAGCAGTTTGGTAGCTCGTTGGGCTCATAACCCGAAAGTCGCAGGTTCA AATCCGGCCTCCGCTAAAAAATAAATAAATTTATTAAATTTTCATACCGA GTATTAAAATACCAAAAAATGTCTATTTATCCTGGTCAATTTATGCCAAC GTTCGGGGGAAGCACTGGCGGATGGTTACGTTCAGCGGAATTTGAAGAGA AATACGTAATTACTTGGAATTCTAAGGAAGAGCAACTATTTGAAATACCT ACTGGTGGAACTGCGTTAATGCTATTAGGTCAGAATCTTTTATACTTAGC TCGTAAGGAGCAATGTCTTGCATTAGGAACAGCTTTAAGAAAGCTAAAAA TTAAAGATTATAAAATTTATAGAATTTTTCCAGGTGGAGAAATACAATTC CTACATCCAAAAGATGGCGTTTTTCCTGAGACATCAAATCAAGGTAGAAT GCCAGTAGGTAAAAGAGACTTTTCAATCGGTAAAAACCCAAACCCCGCTT CTATCAAGTGGAAATAAACGAATGAATGTGTG
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Coding sequence (CDS) from alignment at P-fluviatile_contig89:119716..120247+

>mRNA_P-fluviatile_contig89.14988.1 ID=mRNA_P-fluviatile_contig89.14988.1|Name=mRNA_P-fluviatile_contig89.14988.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=798bp|location=Sequence derived from alignment at P-fluviatile_contig89:119716..120247+ (Porterinema fluviatile SAG_2381)
ATGTCTATTTATCCTGGTCAATTTATGCCAACGTTCGGGGGAAGCACTGG
CGGATGGTTACGTTCAGCGGAATTTGAAGAGAAATACGTAATTACTTGGA
ATTCTAAGGAAGAGCAACTATTTGAAATACCTACTGGTGGAACTGCGTTA
ATGCTATTAGGTCAGAATCTTTTATACTTAGCTCGTAAGGAGCAATGTCT
TGCATTAGGAACAGCTTTAAGAAAGCTAAAAATTAAAGATTATAAAATTT
ATAGAATTTTTCCAGGTGGAGAAATACAATTCCTACATCCAAAAGATGGC
GTTTTTCCTGAGACATCAAATCAAGGTAGAATGCCAGTAGGTAAAAGAGA
CTTTTCAATCGGTAAAAACCCAAACCCCGCTTCTATCAAGTGGAAATAAA
TGTCTATTTATCCTGGTCAATTTATGCCAACGTTCGGGGGAAGCACTGGC
GGATGGTTACGTTCAGCGGAATTTGAAGAGAAATACGTAATTACTTGGAA
TTCTAAGGAAGAGCAACTATTTGAAATACCTACTGGTGGAACTGCGTTAA
TGCTATTAGGTCAGAATCTTTTATACTTAGCTCGTAAGGAGCAATGTCTT
GCATTAGGAACAGCTTTAAGAAAGCTAAAAATTAAAGATTATAAAATTTA
TAGAATTTTTCCAGGTGGAGAAATACAATTCCTACATCCAAAAGATGGCG
TTTTTCCTGAGACATCAAATCAAGGTAGAATGCCAGTAGGTAAAAGAGAC
TTTTCAATCGGTAAAAACCCAAACCCCGCTTCTATCAAGTGGAAATAA
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