mRNA_P-fluviatile_contig89.14984.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig89.14984.1
Unique NamemRNA_P-fluviatile_contig89.14984.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig89.14984.1 vs. uniprot
Match: A0A6B7EVQ7_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EVQ7_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 4.550e-50
Identity = 92/134 (68.66%), Postives = 108/134 (80.60%), Query Frame = 2
Query:  110 KLKNFITKKKVETKAIKKQIKPFNKVINYHFVIGSSKFLLRNEPLEEMLRERAQFLKREKKPITFWLVKSPKFLKSIELNSIKSELSQAGLLDVELTAIVSLDKSFVTWLKLRLQNVGQSSFRLSEEISSPLAS 511
            K K  I+K K  +K I     P +K + Y FVIGSSKFLL+NEPLEEMLRERAQFLKREKKPITFWLVKSPKFL S +L+ IKS+L +A L +VELTAIVS+D++F+TWLKLRLQNVG+ SF   E+ISSPLAS
Sbjct:    5 KFKKRISKNKKVSKII-----PVSKKVKYFFVIGSSKFLLKNEPLEEMLRERAQFLKREKKPITFWLVKSPKFLNSSQLSGIKSKLLEAQLSEVELTAIVSVDQTFITWLKLRLQNVGEGSFITGEDISSPLAS 133          
BLAST of mRNA_P-fluviatile_contig89.14984.1 vs. uniprot
Match: D1J778_ECTSI (Uncharacterized protein ycf54 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J778_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 1.620e-43
Identity = 84/126 (66.67%), Postives = 103/126 (81.75%), Query Frame = 2
Query:  143 ETKAIKK--QIKPFNKVINYHFVIGSSKFLLRNEPLEEMLRERAQFLKREKKPITFWLVKSPKFLKSIELNSIKSELSQAGLLDVELTAIVSLDKSFVTWLKLRLQNVGQSSF-RLSEEISSPLAS 511
            E K ++K  Q+KP    +NYHF+IGSS FLL+NEPLEEMLRERAQF KRE KPITFWLVKSP+FL S +L+ I+ +L +AGL +VELTAIVS+D+SF+TWLKLRLQNV Q +F  L+ +I SPLAS
Sbjct:   46 EVKRLQKLNQLKP----VNYHFIIGSSTFLLKNEPLEEMLRERAQFFKREGKPITFWLVKSPEFLNSNQLSGIQDKLLKAGLSNVELTAIVSVDQSFITWLKLRLQNVAQGNFIALNGDILSPLAS 167          
BLAST of mRNA_P-fluviatile_contig89.14984.1 vs. uniprot
Match: A0A344PF91_9PHAE (Uncharacterized protein n=1 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A344PF91_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 4.210e-36
Identity = 69/111 (62.16%), Postives = 88/111 (79.28%), Query Frame = 2
Query:  182 KVINYHFVIGSSKFLLRNEPLEEMLRERAQFLKREKKPITFWLVKSPKFLKSIELNSIKSELSQAGLLDVELTAIVSLDKSFVTWLKLRLQNVGQSSFR-LSEEISSPLAS 511
            K + Y FVIGSSKFLL NEPLEE+LRER Q   REKK I FW++KSPKFL S++L  IK++L++ GL +VEL+AIVSLD+ F+ W+KLRLQNV +S+F   + +I SPLAS
Sbjct:    3 KAVKYFFVIGSSKFLLDNEPLEEILRERVQQYAREKKTIDFWIIKSPKFLNSVDLIGIKNKLTKDGLGEVELSAIVSLDEVFIKWMKLRLQNVAESNFMAFTNDIESPLAS 113          
BLAST of mRNA_P-fluviatile_contig89.14984.1 vs. uniprot
Match: A0A6B7IL37_9PHAE (Uncharacterized protein n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A6B7IL37_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.450e-33
Identity = 67/113 (59.29%), Postives = 86/113 (76.11%), Query Frame = 2
Query:  182 KVINYHFVIGSSKFLLRNEPLEEMLRERAQFLKREKKPITFWLVKSPKFLKSIELNSIKSELSQAGLLDVELTAIVSLDKSFVTWLKLRLQNVGQSSFRL---SEEISSPLAS 511
            K + Y FVIGSSKFLL NEPLEE+LRER Q   REKK I FW++KSPKFL S++L  +K++L++ GL   EL+AIVSLD+ F+ W+KLRLQNV +S+F +     +I SPLAS
Sbjct:   34 KPVKYFFVIGSSKFLLDNEPLEEILRERIQQYAREKKTIDFWIIKSPKFLNSLDLIDVKNKLTKDGLGKAELSAIVSLDEVFIKWMKLRLQNVAESNFMVFANDNDIESPLAS 146          
BLAST of mRNA_P-fluviatile_contig89.14984.1 vs. uniprot
Match: A0A8F0FB57_COSCS (Uncharacterized protein n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0FB57_COSCS)

HSP 1 Score: 119 bits (298), Expect = 5.030e-31
Identity = 63/115 (54.78%), Postives = 88/115 (76.52%), Query Frame = 2
Query:  194 YHFVIGSSKFLLRNEPLEEMLRERAQFLKREKKPITFWLVKSPKFLKSIELNSIKSELSQAGLLDVELTAIVSLDKSFVTWLKLRLQNVGQSSFRL-SEEISSPLASGF*VESIG 535
            Y+F++ SS+FLL  EP+EE+LRER Q  +R KK I FWLV+SPKFL S++L  ++++L+QA + D E +AIVS+DK+F+TWLKLRL NV   SF+  + +I+SPLAS F V+ I 
Sbjct:   10 YYFIVASSEFLLVAEPVEEILRERVQHYRRMKKNIDFWLVQSPKFLDSVQLTDLQTKLTQARIAD-ECSAIVSVDKTFITWLKLRLNNVAMGSFKAPTGDITSPLASNFKVDRIS 123          
BLAST of mRNA_P-fluviatile_contig89.14984.1 vs. uniprot
Match: A0A1I9LVV7_9PHAE (Uncharacterized protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVV7_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 2.850e-29
Identity = 65/136 (47.79%), Postives = 92/136 (67.65%), Query Frame = 2
Query:  113 LKNFITKKKVETKAIKKQIKPFNKVINYHFVIGSSKFLLRNEPLEEMLRERAQFLKREKKPITFWLVKSPKFLKSIELNSIKSELSQAGLLDVELTAIVSLDKSFVTWLKLRLQNVGQSSFRLSEE---ISSPLAS 511
            ++NF  K+K   K +  ++KP    + Y+++I SS FLL+ EPLEE+LRER+Q+  RE+ PI +WLVK PKFL S +L+    +L ++GL +VELT+++SL+KSF  WLKLR  +V Q SF    E   I  PLAS
Sbjct:   20 VRNFHPKQKETKKILPVKLKP----VTYYYIIASSNFLLKIEPLEEVLRERSQYYTREENPINYWLVKCPKFLDSSQLSETNVKLDKSGLSNVELTSVISLNKSFTIWLKLRFHHVVQGSFVAFLEGGDIPDPLAS 151          
BLAST of mRNA_P-fluviatile_contig89.14984.1 vs. uniprot
Match: A0A8F0FBA1_9PHAE (Uncharacterized protein n=10 Tax=Laminariales TaxID=2886 RepID=A0A8F0FBA1_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 9.590e-29
Identity = 61/112 (54.46%), Postives = 84/112 (75.00%), Query Frame = 2
Query:  194 YHFVIGSSKFLLRNEPLEEMLRERAQFLKREKKPITFWLVKSPKFLKSIELNSIKSELSQAGLLDVELTAIVSLDKSFVTWLKLRLQNVGQSSFRL-SEEISSPLASGF*VE 526
            Y+F++ SS FLL  EP+EE+LRER Q  +R KK I FWLV+SPKFL+S++L  ++++L QA + + E +AIVS+DK+F+TWLKLRL NV   SF   + +I+SPLAS F  E
Sbjct:   10 YYFIVASSDFLLVAEPVEEILRERVQHYRRVKKNIDFWLVQSPKFLESVQLTDLQTKLRQARIAN-ECSAIVSVDKTFITWLKLRLNNVAMGSFTAPTGDITSPLASNFKAE 120          
BLAST of mRNA_P-fluviatile_contig89.14984.1 vs. uniprot
Match: A0A8F0JXV7_9PHAE (Uncharacterized protein n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0JXV7_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.560e-28
Identity = 62/114 (54.39%), Postives = 82/114 (71.93%), Query Frame = 2
Query:  194 YHFVIGSSKFLLRNEPLEEMLRERAQFLKREKKPITFWLVKSPKFLKSIELNSIKSELSQAGLLDVELTAIVSLDKSFVTWLKLRLQNVGQSSFRL-SEEISSPLASGF*VESI 532
            YHF++ S+ FLL  EP+EE+LRER Q  +R KK I FW VKSPKFL+S +L +++++LS+        +AIVSLDKSFVTWLKLRL NV   SF   +E+I+SPLAS +  + I
Sbjct:   10 YHFIVASNDFLLVAEPVEEILRERVQHYRRVKKTIDFWFVKSPKFLESTQLTNLQTKLSKDS------SAIVSLDKSFVTWLKLRLNNVAVGSFSAPTEDITSPLASNYKAKEI 117          
BLAST of mRNA_P-fluviatile_contig89.14984.1 vs. uniprot
Match: A0A516ICN5_9PHAE (Ycf54 n=7 Tax=Laminariales TaxID=2886 RepID=A0A516ICN5_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 3.820e-28
Identity = 60/114 (52.63%), Postives = 86/114 (75.44%), Query Frame = 2
Query:  194 YHFVIGSSKFLLRNEPLEEMLRERAQFLKREKKPITFWLVKSPKFLKSIELNSIKSELSQAGLLDVELTAIVSLDKSFVTWLKLRLQNVGQSSFRL-SEEISSPLASGF*VESI 532
            Y+F++ S++FLL  EP+EE+LRER Q  +R KK I FWLV+SPKFL+S++L  ++++L+QA + + + +AIVS+DK+F+TWLKLRL NV   SF   + +I SPLAS F V  I
Sbjct:   10 YYFIVASNEFLLVTEPVEEILRERVQHYRRVKKNIDFWLVQSPKFLESVQLIDLQTKLTQARIAN-QCSAIVSVDKTFITWLKLRLNNVAIGSFSAPTGDIKSPLASNFKVNEI 122          
BLAST of mRNA_P-fluviatile_contig89.14984.1 vs. uniprot
Match: A0A8F0JZN3_9PHAE (Uncharacterized protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZN3_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 2.700e-25
Identity = 55/109 (50.46%), Postives = 79/109 (72.48%), Query Frame = 2
Query:  194 YHFVIGSSKFLLRNEPLEEMLRERAQFLKREKKPITFWLVKSPKFLKSIELNSIKSELSQAGLLDVELTAIVSLDKSFVTWLKLRLQNVGQSSFRL-SEEISSPLASGF 517
            Y+F++ SS FLL  EP+EE+LRER Q  +R KK   FWL++SPKF++S +L  ++ ++S+      + +A+VSLDKSF+TWLKLRL NV   SF   +++I+SPLAS F
Sbjct:   10 YYFILASSDFLLVTEPVEEILRERVQHYRRIKKSTNFWLIRSPKFMESNQLVDLRGKVSK------DCSAVVSLDKSFITWLKLRLNNVAVGSFVAPTDDITSPLASNF 112          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig89.14984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B7EVQ7_9PHAE4.550e-5068.66Uncharacterized protein n=1 Tax=Cladosiphon okamur... [more]
D1J778_ECTSI1.620e-4366.67Uncharacterized protein ycf54 n=2 Tax=Ectocarpus s... [more]
A0A344PF91_9PHAE4.210e-3662.16Uncharacterized protein n=1 Tax=Endarachne bingham... [more]
A0A6B7IL37_9PHAE1.450e-3359.29Uncharacterized protein n=4 Tax=Scytosiphonaceae T... [more]
A0A8F0FB57_COSCS5.030e-3154.78Uncharacterized protein n=2 Tax=Laminariales TaxID... [more]
A0A1I9LVV7_9PHAE2.850e-2947.79Uncharacterized protein n=1 Tax=Pleurocladia lacus... [more]
A0A8F0FBA1_9PHAE9.590e-2954.46Uncharacterized protein n=10 Tax=Laminariales TaxI... [more]
A0A8F0JXV7_9PHAE1.560e-2854.39Uncharacterized protein n=2 Tax=Laminariales TaxID... [more]
A0A516ICN5_9PHAE3.820e-2852.63Ycf54 n=7 Tax=Laminariales TaxID=2886 RepID=A0A516... [more]
A0A8F0JZN3_9PHAE2.700e-2550.46Uncharacterized protein n=1 Tax=Chorda asiatica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig89contigP-fluviatile_contig89:110468..111106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score65.9
Seed ortholog evalue1.1e-08
Seed eggNOG ortholog313624.NSP_860
Preferred nameycf54
EggNOG free text desc.Protein of unknown function (DUF2488)
EggNOG OGs1G6QT@1117,1HNU7@1161,2AIVE@1,319CP@2
COG Functional cat.S
Best tax levelNostocales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size639
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig89.14984.1prot_P-fluviatile_contig89.14984.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig89 110718..110987 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817300.548313-UTR-P-fluviatile_contig89:110467..1107171622817300.548313-UTR-P-fluviatile_contig89:110467..110717Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 110468..110717 +
1693571985.550583-UTR-P-fluviatile_contig89:110467..1107171693571985.550583-UTR-P-fluviatile_contig89:110467..110717Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 110468..110717 +
1622817300.5782108-UTR-P-fluviatile_contig89:110987..1111061622817300.5782108-UTR-P-fluviatile_contig89:110987..111106Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 110988..111106 +
1693571985.5727732-UTR-P-fluviatile_contig89:110987..1111061693571985.5727732-UTR-P-fluviatile_contig89:110987..111106Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 110988..111106 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817300.5638134-CDS-P-fluviatile_contig89:110717..1109871622817300.5638134-CDS-P-fluviatile_contig89:110717..110987Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 110718..110987 +
1693571985.5627537-CDS-P-fluviatile_contig89:110717..1109871693571985.5627537-CDS-P-fluviatile_contig89:110717..110987Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 110718..110987 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig89.14984.1

>prot_P-fluviatile_contig89.14984.1 ID=prot_P-fluviatile_contig89.14984.1|Name=mRNA_P-fluviatile_contig89.14984.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=90bp
MLRERAQFLKREKKPITFWLVKSPKFLKSIELNSIKSELSQAGLLDVELT
AIVSLDKSFVTWLKLRLQNVGQSSFRLSEEISSPLASGF*
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mRNA from alignment at P-fluviatile_contig89:110468..111106+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig89.14984.1 ID=mRNA_P-fluviatile_contig89.14984.1|Name=mRNA_P-fluviatile_contig89.14984.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=639bp|location=Sequence derived from alignment at P-fluviatile_contig89:110468..111106+ (Porterinema fluviatile SAG_2381)
GTAATTATACTCATTGTCAAATTTTTGATACTTAACATCCCTATCAAACC CCCTAGCTTAATTGAATGTATATAGAAATTACAAAAATAAATAGATACTA TTATAAAAAAAACTTAAAAATTTTATAACTAAAAAAAAAGTGGAAACTAA AGCAATAAAAAAACAGATTAAACCCTTTAATAAAGTAATAAACTATCATT TTGTTATTGGAAGCAGTAAGTTTCTTCTAAGAAATGAACCATTGGAAGAA ATGTTACGTGAACGAGCACAATTTCTTAAAAGAGAAAAAAAACCTATTAC TTTTTGGTTAGTTAAATCGCCTAAATTTTTGAAATCCATTGAACTAAATT CTATTAAATCTGAATTATCACAAGCTGGGTTATTAGATGTTGAATTAACA GCAATTGTTTCATTAGACAAAAGTTTTGTTACCTGGCTAAAATTAAGATT ACAAAACGTAGGCCAAAGTAGTTTTAGACTGAGTGAAGAGATTTCTAGTC CTTTAGCTTCTGGGTTTTAGGTAGAATCAATAGGTATAATCAAGTTATCT AAAATAAGGCTTATGTTCTTCTAAAAGTTTCTGAAAATAACTGTAGTGAA CTAAATCTAATTTTATCTTTTATTTAAAGGATTTATTTT
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Coding sequence (CDS) from alignment at P-fluviatile_contig89:110468..111106+

>mRNA_P-fluviatile_contig89.14984.1 ID=mRNA_P-fluviatile_contig89.14984.1|Name=mRNA_P-fluviatile_contig89.14984.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=540bp|location=Sequence derived from alignment at P-fluviatile_contig89:110468..111106+ (Porterinema fluviatile SAG_2381)
ATGTTACGTGAACGAGCACAATTTCTTAAAAGAGAAAAAAAACCTATTAC
TTTTTGGTTAGTTAAATCGCCTAAATTTTTGAAATCCATTGAACTAAATT
CTATTAAATCTGAATTATCACAAGCTGGGTTATTAGATGTTGAATTAACA
GCAATTGTTTCATTAGACAAAAGTTTTGTTACCTGGCTAAAATTAAGATT
ACAAAACGTAGGCCAAAGTAGTTTTAGACTGAGTGAAGAGATTTCTAGTC
CTTTAGCTTCTGGGTTTTAGATGTTACGTGAACGAGCACAATTTCTTAAA
AGAGAAAAAAAACCTATTACTTTTTGGTTAGTTAAATCGCCTAAATTTTT
GAAATCCATTGAACTAAATTCTATTAAATCTGAATTATCACAAGCTGGGT
TATTAGATGTTGAATTAACAGCAATTGTTTCATTAGACAAAAGTTTTGTT
ACCTGGCTAAAATTAAGATTACAAAACGTAGGCCAAAGTAGTTTTAGACT
GAGTGAAGAGATTTCTAGTCCTTTAGCTTCTGGGTTTTAG
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