mRNA_P-fluviatile_contig89.14981.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig89.14981.1
Unique NamemRNA_P-fluviatile_contig89.14981.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig89.14981.1 vs. uniprot
Match: D1J771_ECTSI (Cytochrome c-550 n=6 Tax=Ectocarpales TaxID=2877 RepID=D1J771_ECTSI)

HSP 1 Score: 285 bits (730), Expect = 8.340e-95
Identity = 140/148 (94.59%), Postives = 145/148 (97.97%), Query Frame = 2
Query:   11 LVNLGTSSVLAIELDEATRTIPVTSDGKTVVLTPEQVKRGKRLFNASCGQCHVGGITKTNPNLGLDPEALSLATPSRNNIAGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMQSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 454
            L+NLGTSSVLAIELDEATRTIP TSDGKT+VLTPEQVKRGKRLFN+SCGQCHVGGITKTNPNLGLD EALSLATPSRNNI GLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRM+SLDENDLVDIAGHILLQPKI+SEKWGGGKIYY
Sbjct:   14 LLNLGTSSVLAIELDEATRTIPATSDGKTIVLTPEQVKRGKRLFNSSCGQCHVGGITKTNPNLGLDTEALSLATPSRNNITGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKILSEKWGGGKIYY 161          
BLAST of mRNA_P-fluviatile_contig89.14981.1 vs. uniprot
Match: A0A1I9LVF9_9PHAE (Cytochrome c-550 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVF9_9PHAE)

HSP 1 Score: 278 bits (710), Expect = 9.130e-92
Identity = 137/150 (91.33%), Postives = 143/150 (95.33%), Query Frame = 2
Query:    5 ACLVNLGTSSVLAIELDEATRTIPVTSDGKTVVLTPEQVKRGKRLFNASCGQCHVGGITKTNPNLGLDPEALSLATPSRNNIAGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMQSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 454
            A L+NL + S  AIELDEATRTIPVTSDGKT+VLTPEQVKRGKRLFN+SCGQCHVGGITKTNPN+GLD EALSLATPSRNNI GLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRM+SLDENDLVDIAGHILLQPKIVSEKWGGGKIYY
Sbjct:   12 ASLLNLISCSAFAIELDEATRTIPVTSDGKTIVLTPEQVKRGKRLFNSSCGQCHVGGITKTNPNVGLDTEALSLATPSRNNITGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 161          
BLAST of mRNA_P-fluviatile_contig89.14981.1 vs. uniprot
Match: A0A0R6M468_UNDPI (Cytochrome c-550 n=36 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M468_UNDPI)

HSP 1 Score: 277 bits (709), Expect = 1.300e-91
Identity = 137/150 (91.33%), Postives = 142/150 (94.67%), Query Frame = 2
Query:    5 ACLVNLGTSSVLAIELDEATRTIPVTSDGKTVVLTPEQVKRGKRLFNASCGQCHVGGITKTNPNLGLDPEALSLATPSRNNIAGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMQSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 454
            ACL     SSVLAI+LDEATRTIPVTSDGKT VLTPEQVKRGKRLFN+SCGQCHVGG+TKTNPNLGLD EALSLATP+RNNI GLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRM+SLDENDLVDIAGHILLQPKIVSEKWGGGKIYY
Sbjct:   12 ACLATSVGSSVLAIDLDEATRTIPVTSDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDSEALSLATPARNNINGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 161          
BLAST of mRNA_P-fluviatile_contig89.14981.1 vs. uniprot
Match: A0A8F0FAG4_9PHAE (Photosystem II protein V n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FAG4_9PHAE)

HSP 1 Score: 276 bits (705), Expect = 5.250e-91
Identity = 136/150 (90.67%), Postives = 143/150 (95.33%), Query Frame = 2
Query:    5 ACLVNLGTSSVLAIELDEATRTIPVTSDGKTVVLTPEQVKRGKRLFNASCGQCHVGGITKTNPNLGLDPEALSLATPSRNNIAGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMQSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 454
            ACL N   SSVLAI+LDEATRTIPVTSDGKT VLTPEQVKRGKRLFN+SCGQCHVGGITKTNPNLGLDPEALSLATPSRNNI GLV+YMK+PTTYDGLESIAEIHPSIKSANIFTRM++LDE DLVDIAGHILLQPKI+SEKWGGGKIYY
Sbjct:   12 ACLANSVGSSVLAIDLDEATRTIPVTSDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLATPSRNNINGLVNYMKDPTTYDGLESIAEIHPSIKSANIFTRMRALDEKDLVDIAGHILLQPKILSEKWGGGKIYY 161          
BLAST of mRNA_P-fluviatile_contig89.14981.1 vs. uniprot
Match: A0A0Y0JAL7_9PHAE (PsbV n=10 Tax=Fucales TaxID=3009 RepID=A0A0Y0JAL7_9PHAE)

HSP 1 Score: 274 bits (700), Expect = 3.020e-90
Identity = 133/148 (89.86%), Postives = 142/148 (95.95%), Query Frame = 2
Query:   11 LVNLGTSSVLAIELDEATRTIPVTSDGKTVVLTPEQVKRGKRLFNASCGQCHVGGITKTNPNLGLDPEALSLATPSRNNIAGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMQSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 454
            L+NL   SVLAIELDEATRTIPVT+DGKT VLTPEQVKRGKRLFN+SCGQCHVGG+TKTNPNLGLDPEALSLATP+RNNI  LVDYMK+PTT+DGLESIAEIHPSIKSANIFTRM+SLDENDL+DIAGHILLQPKIVSEKWGGGKIYY
Sbjct:   14 LINLTNLSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKDPTTFDGLESIAEIHPSIKSANIFTRMRSLDENDLIDIAGHILLQPKIVSEKWGGGKIYY 161          
BLAST of mRNA_P-fluviatile_contig89.14981.1 vs. uniprot
Match: A0A6B7EXK3_9PHAE (Photosystem II cytochrome c550 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EXK3_9PHAE)

HSP 1 Score: 273 bits (699), Expect = 4.740e-90
Identity = 133/144 (92.36%), Postives = 139/144 (96.53%), Query Frame = 2
Query:   23 GTSSVLAIELDEATRTIPVTSDGKTVVLTPEQVKRGKRLFNASCGQCHVGGITKTNPNLGLDPEALSLATPSRNNIAGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMQSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 454
             +S  LAIELDEATRTIP TSDGKT+VLTPEQVKRGKRLFN+SCGQCHVGG+TKTNPNLGLD EALSLATPSRNNI+GLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRM+SLDENDLVDIAGHILLQPKIVSEKWGGGKIYY
Sbjct:   21 SSSKALAIELDEATRTIPATSDGKTIVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDTEALSLATPSRNNISGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 164          
BLAST of mRNA_P-fluviatile_contig89.14981.1 vs. uniprot
Match: A0A8F0F791_9PHAE (Photosystem II protein V n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F791_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 5.400e-86
Identity = 127/149 (85.23%), Postives = 137/149 (91.95%), Query Frame = 2
Query:    8 CLVNLGTSSVLAIELDEATRTIPVTSDGKTVVLTPEQVKRGKRLFNASCGQCHVGGITKTNPNLGLDPEALSLATPSRNNIAGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMQSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 454
            C  N+   SV AIELDEATRTIPV   GKT VLTPEQ+KRGKRLFN+SCGQCHVGGITKTNPNLGLDPEALSLA+P+RNNI GLVDYMKNPTTYDGLESIAEIHPSIKSANIF+RM+SLD++DL DIAGHIL+QPKIVSEKWGGGKIYY
Sbjct:   13 CFSNIFNPSVFAIELDEATRTIPVNGKGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLVDYMKNPTTYDGLESIAEIHPSIKSANIFSRMRSLDDDDLFDIAGHILIQPKIVSEKWGGGKIYY 161          
BLAST of mRNA_P-fluviatile_contig89.14981.1 vs. uniprot
Match: A0A8E6D6I5_9PHAE (Cytochrome c-550 n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D6I5_9PHAE)

HSP 1 Score: 254 bits (650), Expect = 1.550e-82
Identity = 127/152 (83.55%), Postives = 138/152 (90.79%), Query Frame = 2
Query:    5 ACLVN--LGTSSVLAIELDEATRTIPVTSDGKTVVLTPEQVKRGKRLFNASCGQCHVGGITKTNPNLGLDPEALSLATPSRNNIAGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMQSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 454
            ACL++  L  S+  AIELDEATRTI V S GKT +LTPEQVKRGKRLFN+SCGQCHVGG+TKTNPNLGLDPEALSLATP+R+NI GLVDYMKNPTTYDGLESIAEIHPSIKSA+IF RM+SL E+DLV IAGHILLQPKIVSEKWGGGKIYY
Sbjct:   18 ACLLSSSLLVSAAFAIELDEATRTISVDSTGKTTILTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARDNITGLVDYMKNPTTYDGLESIAEIHPSIKSADIFPRMRSLSEDDLVAIAGHILLQPKIVSEKWGGGKIYY 169          
BLAST of mRNA_P-fluviatile_contig89.14981.1 vs. uniprot
Match: A0A2I4Q2C0_9PHAE (Cytochrome c-550 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2C0_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 4.960e-80
Identity = 121/151 (80.13%), Postives = 134/151 (88.74%), Query Frame = 2
Query:    8 CLVN--LGTSSVLAIELDEATRTIPVTSDGKTVVLTPEQVKRGKRLFNASCGQCHVGGITKTNPNLGLDPEALSLATPSRNNIAGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMQSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 454
            CL +  +   +   IELDEATRTI V  +GKT VLT EQ+KRGKRLFN+SCGQCHVGG+TKTNPNLGLDPEALSLATP+RNNI GLVDYMK PTTYDGLESIAEIHPSIKSANIF+RM+SLD++DL DIAGHIL+QPKIVSEKWGGGKIYY
Sbjct:   14 CLFSSFISVPNTFGIELDEATRTIKVNKEGKTTVLTAEQLKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNIDGLVDYMKAPTTYDGLESIAEIHPSIKSANIFSRMRSLDDDDLFDIAGHILIQPKIVSEKWGGGKIYY 164          
BLAST of mRNA_P-fluviatile_contig89.14981.1 vs. uniprot
Match: A0A7S6ZPA0_9STRA (Cytochrome c-550 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPA0_9STRA)

HSP 1 Score: 241 bits (616), Expect = 1.820e-77
Identity = 117/151 (77.48%), Postives = 130/151 (86.09%), Query Frame = 2
Query:    2 FACLVNLGTSSVLAIELDEATRTIPVTSDGKTVVLTPEQVKRGKRLFNASCGQCHVGGITKTNPNLGLDPEALSLATPSRNNIAGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMQSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 454
            F    N+      A+ELDEATRTIP+ + GKT +L+ EQVKRGKRLFN SCGQCHVGGITKTNPNLGLD EALSLATPSRN+I GLVDYMKNPTTYDGLESIAEIHPSIKSA+IF RM+SL E DLV IAGHILLQPK+++EKWGGGKIY+
Sbjct:   13 FLLFSNILGPVAFAVELDEATRTIPLDNTGKTTILSAEQVKRGKRLFNVSCGQCHVGGITKTNPNLGLDTEALSLATPSRNSITGLVDYMKNPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVSIAGHILLQPKVIAEKWGGGKIYF 163          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig89.14981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J771_ECTSI8.340e-9594.59Cytochrome c-550 n=6 Tax=Ectocarpales TaxID=2877 R... [more]
A0A1I9LVF9_9PHAE9.130e-9291.33Cytochrome c-550 n=1 Tax=Pleurocladia lacustris Ta... [more]
A0A0R6M468_UNDPI1.300e-9191.33Cytochrome c-550 n=36 Tax=Phaeophyceae TaxID=2870 ... [more]
A0A8F0FAG4_9PHAE5.250e-9190.67Photosystem II protein V n=2 Tax=Ecklonia TaxID=10... [more]
A0A0Y0JAL7_9PHAE3.020e-9089.86PsbV n=10 Tax=Fucales TaxID=3009 RepID=A0A0Y0JAL7_... [more]
A0A6B7EXK3_9PHAE4.740e-9092.36Photosystem II cytochrome c550 n=1 Tax=Cladosiphon... [more]
A0A8F0F791_9PHAE5.400e-8685.23Photosystem II protein V n=1 Tax=Protohalopteris s... [more]
A0A8E6D6I5_9PHAE1.550e-8283.55Cytochrome c-550 n=1 Tax=Ishige okamurae TaxID=233... [more]
A0A2I4Q2C0_9PHAE4.960e-8080.13Cytochrome c-550 n=1 Tax=Dictyopteris divaricata T... [more]
A0A7S6ZPA0_9STRA1.820e-7777.48Cytochrome c-550 n=1 Tax=Schizocladia ischiensis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig89contigP-fluviatile_contig89:103722..104619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.9
Seed ortholog evalue1.7e-27
Seed eggNOG ortholog2880.D1J771
Preferred namepsbV
KEGG koko:K02720
KEGG Pathwayko00195,ko01100,map00195,map01100
EggNOG free text desc.photosynthesis
EggNOG OGs2CXNY@1,2RYSJ@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categoryother localisation
Exons2
Model size870
Cds size189
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig89.14981.1prot_P-fluviatile_contig89.14981.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig89 103990..104178 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817300.4108381-UTR-P-fluviatile_contig89:103721..1039891622817300.4108381-UTR-P-fluviatile_contig89:103721..103989Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 103722..103989 +
1693571985.4845693-UTR-P-fluviatile_contig89:103721..1039891693571985.4845693-UTR-P-fluviatile_contig89:103721..103989Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 103722..103989 +
1622817300.4321659-UTR-P-fluviatile_contig89:104178..1042851622817300.4321659-UTR-P-fluviatile_contig89:104178..104285Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 104179..104285 +
1693571985.5074809-UTR-P-fluviatile_contig89:104178..1042851693571985.5074809-UTR-P-fluviatile_contig89:104178..104285Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 104179..104285 +
1622817300.4455483-UTR-P-fluviatile_contig89:104313..1046191622817300.4455483-UTR-P-fluviatile_contig89:104313..104619Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 104314..104619 +
1693571985.5160449-UTR-P-fluviatile_contig89:104313..1046191693571985.5160449-UTR-P-fluviatile_contig89:104313..104619Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 104314..104619 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817300.4218242-CDS-P-fluviatile_contig89:103989..1041781622817300.4218242-CDS-P-fluviatile_contig89:103989..104178Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 103990..104178 +
1693571985.4972482-CDS-P-fluviatile_contig89:103989..1041781693571985.4972482-CDS-P-fluviatile_contig89:103989..104178Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 103990..104178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig89.14981.1

>prot_P-fluviatile_contig89.14981.1 ID=prot_P-fluviatile_contig89.14981.1|Name=mRNA_P-fluviatile_contig89.14981.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=63bp
MKNPTTYDGLESIAEIHPSIKSANIFTRMQSLDENDLVDIAGHILLQPKI
VSEKWGGGKIYY*
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mRNA from alignment at P-fluviatile_contig89:103722..104619+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig89.14981.1 ID=mRNA_P-fluviatile_contig89.14981.1|Name=mRNA_P-fluviatile_contig89.14981.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=898bp|location=Sequence derived from alignment at P-fluviatile_contig89:103722..104619+ (Porterinema fluviatile SAG_2381)
TTTTGCATGTTTAGTAAATTTAGGTACTTCATCCGTTTTAGCTATCGAAC TCGATGAAGCAACAAGAACAATACCTGTAACTAGTGATGGTAAAACAGTA GTTCTTACTCCAGAACAAGTTAAAAGAGGAAAACGACTATTCAACGCAAG CTGCGGGCAATGTCATGTTGGTGGAATAACAAAAACAAATCCAAATTTAG GACTTGATCCTGAAGCTTTAAGCTTAGCAACACCATCACGTAATAATATT GCCGGCTTAGTTGATTATATGAAAAATCCAACAACTTATGATGGATTAGA ATCTATTGCCGAGATTCACCCAAGTATCAAGAGTGCTAATATTTTTACAA GAATGCAATCATTAGATGAAAATGATTTAGTAGATATTGCAGGGCATATA CTTTTACAACCTAAAATCGTTTCTGAGAAATGGGGTGGTGGAAAAATTTA TTATTAATTAGAAACTTAGAGTAGCAAAGATTTTTAATCTCATGTTCTAT ATTAAAAAAAATAATAGATTTTTATTAAATTAAAAAAGATTTTATAGGAG AATTACTAATGAAAAAGATTTTTTTGGGTTTCTTTATCTCATTCTTGACT TTAATAAGTTTCTATAATCCAGCAGGAGCTGTAGATATTAACAATGGAGA AAGTGTTTTCACTGCTAATTGTTCTGCATGCCACGCAGGTGGGAATAATG TTATTATGCCTGAAAAAACTTTAAAAAAAGATGCATTAGGAACAAATCAA ATGAATAGTGTTAGTGCTATTACTTACCAAGTAACAAACGGAAAAAATGC GATGCCAGCTTTTGGTGGTCGCTTAAGTGATAGTGATATCGAAGATGTAG CTAATTTTGTTTTATCTCAATCTGAAAAAGATTGGAATTAATCTATAT
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Coding sequence (CDS) from alignment at P-fluviatile_contig89:103722..104619+

>mRNA_P-fluviatile_contig89.14981.1 ID=mRNA_P-fluviatile_contig89.14981.1|Name=mRNA_P-fluviatile_contig89.14981.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=378bp|location=Sequence derived from alignment at P-fluviatile_contig89:103722..104619+ (Porterinema fluviatile SAG_2381)
ATGAAAAATCCAACAACTTATGATGGATTAGAATCTATTGCCGAGATTCA
CCCAAGTATCAAGAGTGCTAATATTTTTACAAGAATGCAATCATTAGATG
AAAATGATTTAGTAGATATTGCAGGGCATATACTTTTACAACCTAAAATC
GTTTCTGAGAAATGGGGTGGTGGAAAAATTTATTATTAAATGAAAAATCC
AACAACTTATGATGGATTAGAATCTATTGCCGAGATTCACCCAAGTATCA
AGAGTGCTAATATTTTTACAAGAATGCAATCATTAGATGAAAATGATTTA
GTAGATATTGCAGGGCATATACTTTTACAACCTAAAATCGTTTCTGAGAA
ATGGGGTGGTGGAAAAATTTATTATTAA
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