mRNA_P-fluviatile_contig89.14980.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig89.14980.1
Unique NamemRNA_P-fluviatile_contig89.14980.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig89.14980.1 vs. uniprot
Match: D1J770_ECTSI (Uncharacterized protein ycf66 n=7 Tax=Ectocarpales TaxID=2877 RepID=D1J770_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 7.460e-40
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:  288 MINIVFGANFLLGLLIILGVLILYFLRNIRPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLVSIALA 515
            MINIVFGANFLLGLLIILGVLILYFLR++RPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLVS+ LA
Sbjct:    1 MINIVFGANFLLGLLIILGVLILYFLRSVRPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLVSLVLA 76
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BLAST of mRNA_P-fluviatile_contig89.14980.1 vs. uniprot
Match: A0A0S0GLI0_COSCS (Ycf66 n=28 Tax=Phaeophyceae TaxID=2870 RepID=A0A0S0GLI0_COSCS)

HSP 1 Score: 138 bits (348), Expect = 2.160e-39
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:  288 MINIVFGANFLLGLLIILGVLILYFLRNIRPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLVSIALA 515
            MINIVFGANFLLGL+IILGVLILYFLR IRPELSRDEDIFFTTLGLIYG+ILIIHGWRLDPILLFSQVLLVSIALA
Sbjct:    1 MINIVFGANFLLGLIIILGVLILYFLRIIRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALA 76
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BLAST of mRNA_P-fluviatile_contig89.14980.1 vs. uniprot
Match: A0A8F0F7Z8_9PHAE (Uncharacterized protein n=3 Tax=Phaeophyceae TaxID=2870 RepID=A0A8F0F7Z8_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 8.720e-39
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 3 
Query:  288 MINIVFGANFLLGLLIILGVLILYFLRNIRPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLVSIALA 515
            MINI FGANFLLGL+IILGVLILYFLR IRPELSRDEDIFFTTLGLIYG+ILIIHGWRLDPILLFSQVLLVSIALA
Sbjct:    1 MINIAFGANFLLGLIIILGVLILYFLRIIRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALA 76
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BLAST of mRNA_P-fluviatile_contig89.14980.1 vs. uniprot
Match: A0A109QSJ6_9PHAE (Ycf66 n=13 Tax=Fucales TaxID=3009 RepID=A0A109QSJ6_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.060e-36
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 3 
Query:  288 MINIVFGANFLLGLLIILGVLILYFLRNIRPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLVSIAL 512
            MINIVFGANFLLGL+II+GVL+LYFLR IRPEL RDEDIFFTTLGLIYG+ILIIHGWRLDPILLFSQVLLVS+ L
Sbjct:    1 MINIVFGANFLLGLIIIIGVLLLYFLRIIRPELCRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSVVL 75
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BLAST of mRNA_P-fluviatile_contig89.14980.1 vs. uniprot
Match: A0A1N7TJI4_9PHAE (Ycf66 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1N7TJI4_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.660e-36
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 3 
Query:  288 MINIVFGANFLLGLLIILGVLILYFLRNIRPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLVSIAL 512
            MINIVFGANFLLGL+II+GVL+LYFLR IRPEL RDEDIFFTTLGLIYG+ILIIHGWRLDPILLFSQVLLVS+ L
Sbjct:    1 MINIVFGANFLLGLIIIIGVLLLYFLRIIRPELCRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSVVL 75
[Close]
BLAST of mRNA_P-fluviatile_contig89.14980.1 vs. uniprot
Match: A0A141BSB5_9PHAE (Ycf66 n=3 Tax=Sargassum TaxID=3015 RepID=A0A141BSB5_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 6.060e-36
Identity = 66/75 (88.00%), Postives = 71/75 (94.67%), Query Frame = 3 
Query:  288 MINIVFGANFLLGLLIILGVLILYFLRNIRPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLVSIAL 512
            MINIVFGANFLLGL+ I+GVL+LYFLR IRPEL RDEDIFFTTLGLIYG+ILIIHGWRLDPILLFSQVLLVS+ L
Sbjct:    1 MINIVFGANFLLGLITIIGVLLLYFLRIIRPELCRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSVVL 75
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BLAST of mRNA_P-fluviatile_contig89.14980.1 vs. uniprot
Match: A0A8E6D4V4_9PHAE (Uncharacterized protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D4V4_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 4.920e-34
Identity = 62/76 (81.58%), Postives = 70/76 (92.11%), Query Frame = 3 
Query:  288 MINIVFGANFLLGLLIILGVLILYFLRNIRPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLVSIALA 515
            M+NI FGANF+LGLL++ GVLILYFLR I+PE++RDEDIFFTTLGLIY  ILIIHGWRLDPILLFSQVLLVS+ LA
Sbjct:    1 MVNITFGANFILGLLVMTGVLILYFLRMIKPEVARDEDIFFTTLGLIYSCILIIHGWRLDPILLFSQVLLVSLCLA 76
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BLAST of mRNA_P-fluviatile_contig89.14980.1 vs. uniprot
Match: A0A7S6ZP91_9STRA (Ycf66 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZP91_9STRA)

HSP 1 Score: 117 bits (293), Expect = 4.020e-31
Identity = 58/76 (76.32%), Postives = 67/76 (88.16%), Query Frame = 3 
Query:  288 MINIVFGANFLLGLLIILGVLILYFLRNIRPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLVSIALA 515
            MINI FGAN +LG  +ILG+L+LYF+R +RPELSRDEDIFF TLGLIY  ILIIHGWRLDPILLFSQVL++SI L+
Sbjct:    1 MINIGFGANLVLGFFVILGMLLLYFVRIVRPELSRDEDIFFATLGLIYSCILIIHGWRLDPILLFSQVLIISIILS 76
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BLAST of mRNA_P-fluviatile_contig89.14980.1 vs. uniprot
Match: B7T208_VAULI (Uncharacterized protein ycf66 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T208_VAULI)

HSP 1 Score: 114 bits (285), Expect = 7.780e-30
Identity = 56/76 (73.68%), Postives = 66/76 (86.84%), Query Frame = 3 
Query:  288 MINIVFGANFLLGLLIILGVLILYFLRNIRPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLVSIALA 515
            MINI FG N +LG L ++GV +LY +R +RPELSRDEDIFFTTLGLIY  ILIIHGWRLDPILLFSQVL+++I+LA
Sbjct:    1 MINIGFGTNLILGFLFVIGVTLLYLVRIVRPELSRDEDIFFTTLGLIYSCILIIHGWRLDPILLFSQVLILAISLA 76
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BLAST of mRNA_P-fluviatile_contig89.14980.1 vs. uniprot
Match: A0T0C5_PHATC (Uncharacterized protein n=9 Tax=Bacillariophycidae TaxID=33850 RepID=A0T0C5_PHATC)

HSP 1 Score: 109 bits (272), Expect = 5.690e-28
Identity = 50/71 (70.42%), Postives = 62/71 (87.32%), Query Frame = 3 
Query:  288 MINIVFGANFLLGLLIILGVLILYFLRNIRPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLV 500
            MIN  FG N  LG+++ LGVLILYFLRN++PE++RDEDIFF T+GL+Y  IL+IHGWRLDPILLFSQVL++
Sbjct:    1 MINFSFGPNIFLGIIVSLGVLILYFLRNVKPEVARDEDIFFATIGLLYSCILMIHGWRLDPILLFSQVLII 71
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig89.14980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J770_ECTSI7.460e-4094.74Uncharacterized protein ycf66 n=7 Tax=Ectocarpales... [more]
A0A0S0GLI0_COSCS2.160e-3996.05Ycf66 n=28 Tax=Phaeophyceae TaxID=2870 RepID=A0A0S... [more]
A0A8F0F7Z8_9PHAE8.720e-3994.74Uncharacterized protein n=3 Tax=Phaeophyceae TaxID... [more]
A0A109QSJ6_9PHAE1.060e-3689.33Ycf66 n=13 Tax=Fucales TaxID=3009 RepID=A0A109QSJ6... [more]
A0A1N7TJI4_9PHAE1.660e-3689.33Ycf66 n=1 Tax=Coccophora langsdorfii TaxID=74099 R... [more]
A0A141BSB5_9PHAE6.060e-3688.00Ycf66 n=3 Tax=Sargassum TaxID=3015 RepID=A0A141BSB... [more]
A0A8E6D4V4_9PHAE4.920e-3481.58Uncharacterized protein n=1 Tax=Ishige okamurae Ta... [more]
A0A7S6ZP91_9STRA4.020e-3176.32Ycf66 n=1 Tax=Schizocladia ischiensis TaxID=196139... [more]
B7T208_VAULI7.780e-3073.68Uncharacterized protein ycf66 n=1 Tax=Vaucheria li... [more]
A0T0C5_PHATC5.690e-2870.42Uncharacterized protein n=9 Tax=Bacillariophycidae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig89contigP-fluviatile_contig89:103019..103533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.9
Seed ortholog evalue2e-30
Seed eggNOG ortholog2880.D1J770
Preferred nameycf66
EggNOG free text desc.Ycf66 protein N-terminus
EggNOG OGs2901P@1,2SANI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons1
Model size515
Cds size228
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817300.3694286-UTR-P-fluviatile_contig89:103018..1033051622817300.3694286-UTR-P-fluviatile_contig89:103018..103305Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 103019..103305 +
1693571985.4619472-UTR-P-fluviatile_contig89:103018..1033051693571985.4619472-UTR-P-fluviatile_contig89:103018..103305Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 103019..103305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817300.3803966-CDS-P-fluviatile_contig89:103305..1035331622817300.3803966-CDS-P-fluviatile_contig89:103305..103533Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 103306..103533 +
1693571985.4737442-CDS-P-fluviatile_contig89:103305..1035331693571985.4737442-CDS-P-fluviatile_contig89:103305..103533Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 103306..103533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig89.14980.1prot_P-fluviatile_contig89.14980.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig89 103306..103533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig89.14980.1

>prot_P-fluviatile_contig89.14980.1 ID=prot_P-fluviatile_contig89.14980.1|Name=mRNA_P-fluviatile_contig89.14980.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=76bp
MINIVFGANFLLGLLIILGVLILYFLRNIRPELSRDEDIFFTTLGLIYGA
ILIIHGWRLDPILLFSQVLLVSIALA
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mRNA from alignment at P-fluviatile_contig89:103019..103533+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig89.14980.1 ID=mRNA_P-fluviatile_contig89.14980.1|Name=mRNA_P-fluviatile_contig89.14980.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=515bp|location=Sequence derived from alignment at P-fluviatile_contig89:103019..103533+ (Porterinema fluviatile SAG_2381)
TTCAAGAAAATATATCTTATTAGAAAAAATAGATAACATTTAAAATTATG
ACACCATCGTTAACAAATTTTTTATCCAGCTTAGTCGCTGGTGGTCTTAT
CGTGGTATTACCTATTAGCCTTGCATTAGTTTTTGTTAGTAAAAAAGATG
CCGTTACTCGTGTATCATCGAAAAAATAGTACTCTGAAAAAATTTTCAAA
AGCTCATTTATTTTTGCTAAAACTAAAACCAAATATTTTATCGCTTCAAA
TTAAATAATAATTACTTTTTCAAAGATCTACTAATTTATGATAAATATCG
TTTTTGGAGCAAATTTCCTTTTAGGTCTTTTGATTATTCTAGGTGTATTG
ATCTTATATTTTTTAAGAAATATACGGCCTGAACTTTCACGTGACGAGGA
TATTTTTTTCACAACATTAGGTTTAATTTATGGTGCTATCTTAATTATTC
ATGGATGGCGACTGGACCCAATATTATTATTTAGTCAAGTTCTTTTGGTT
AGTATTGCTCTTGCT
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Coding sequence (CDS) from alignment at P-fluviatile_contig89:103019..103533+

>mRNA_P-fluviatile_contig89.14980.1 ID=mRNA_P-fluviatile_contig89.14980.1|Name=mRNA_P-fluviatile_contig89.14980.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=456bp|location=Sequence derived from alignment at P-fluviatile_contig89:103019..103533+ (Porterinema fluviatile SAG_2381)
ATGATAAATATCGTTTTTGGAGCAAATTTCCTTTTAGGTCTTTTGATTAT
TCTAGGTGTATTGATCTTATATTTTTTAAGAAATATACGGCCTGAACTTT
CACGTGACGAGGATATTTTTTTCACAACATTAGGTTTAATTTATGGTGCT
ATCTTAATTATTCATGGATGGCGACTGGACCCAATATTATTATTTAGTCA
AGTTCTTTTGGTTAGTATTGCTCTTGCTATGATAAATATCGTTTTTGGAG
CAAATTTCCTTTTAGGTCTTTTGATTATTCTAGGTGTATTGATCTTATAT
TTTTTAAGAAATATACGGCCTGAACTTTCACGTGACGAGGATATTTTTTT
CACAACATTAGGTTTAATTTATGGTGCTATCTTAATTATTCATGGATGGC
GACTGGACCCAATATTATTATTTAGTCAAGTTCTTTTGGTTAGTATTGCT
CTTGCT
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