mRNA_P-fluviatile_contig89.14976.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig89.14976.1
Unique NamemRNA_P-fluviatile_contig89.14976.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig89.14976.1 vs. uniprot
Match: A0A6B7EVE1_9PHAE (30S ribosomal protein S1 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EVE1_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 2.310e-59
Identity = 97/122 (79.51%), Postives = 108/122 (88.52%), Query Frame = 1
Query:   22 MFLCTATSKFDFNKFGLILSKYSYKVKTNDILAGIVIGVESNYALVDLGLEQVCFLPLTEISISPRPSVEVEPININYVGEFLILSINNKSNRIIISMKRVQSIYLWNRLRQIDFTNITIYA 387
            M L   TSKFDFNKFGLILSKYSYK+KTNDILAGIV+GVESNY LVD+GL+QVCFLPL EISISP    +++ +NINY+GEFLIL+IN  SNRII+SMKRVQSIYLWNRLRQIDF NITIYA
Sbjct:    1 MLLSITTSKFDFNKFGLILSKYSYKIKTNDILAGIVVGVESNYVLVDVGLDQVCFLPLKEISISPITK-KIDLLNINYIGEFLILNINKNSNRIIVSMKRVQSIYLWNRLRQIDFKNITIYA 121          
BLAST of mRNA_P-fluviatile_contig89.14976.1 vs. uniprot
Match: D1J709_ECTSI (Chloroplast 30S ribosomal protein S1 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J709_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 9.030e-59
Identity = 101/122 (82.79%), Postives = 106/122 (86.89%), Query Frame = 1
Query:   22 MFLCTATSKFDFNKFGLILSKYSYKVKTNDILAGIVIGVESNYALVDLGLEQVCFLPLTEISISPRPSVEVEPININYVGEFLILSINNKSNRIIISMKRVQSIYLWNRLRQIDFTNITIYA 387
            M L  ATSKFDFNKFGLILS+YSYKVKTNDILAGI+IGVESNY LVDLGLEQVCFLPL EIS  P  +   E +N+NYVGEFLIL IN KSNRIIISMKRVQSIYLWNRLRQIDF NITIYA
Sbjct:    1 MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAGIIIGVESNYVLVDLGLEQVCFLPLKEISRFPIYN-PTELLNVNYVGEFLILDINKKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYA 121          
BLAST of mRNA_P-fluviatile_contig89.14976.1 vs. uniprot
Match: A0A5A4MJF2_9PHAE (30S ribosomal protein S1 n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MJF2_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 1.870e-58
Identity = 96/122 (78.69%), Postives = 107/122 (87.70%), Query Frame = 1
Query:   22 MFLCTATSKFDFNKFGLILSKYSYKVKTNDILAGIVIGVESNYALVDLGLEQVCFLPLTEISISPRPSVEVEPININYVGEFLILSINNKSNRIIISMKRVQSIYLWNRLRQIDFTNITIYA 387
            M L   TSKFDFNKFGLILSKYSYKVKT+DILAGI+IG+ESNYALVDLGLEQVCFLPL EISIS   S  ++ +N+N +GEFLIL IN  SNRI++SMKRVQSIYLWNRLRQIDF+NITIYA
Sbjct:    1 MLLYIVTSKFDFNKFGLILSKYSYKVKTDDILAGIIIGIESNYALVDLGLEQVCFLPLKEISISSPISGPIDLLNVNSIGEFLILDINQNSNRIMVSMKRVQSIYLWNRLRQIDFSNITIYA 122          
BLAST of mRNA_P-fluviatile_contig89.14976.1 vs. uniprot
Match: A0A0R6M9B1_UNDPI (30S ribosomal protein S1 n=11 Tax=Laminariales TaxID=2886 RepID=A0A0R6M9B1_UNDPI)

HSP 1 Score: 181 bits (460), Expect = 5.480e-55
Identity = 95/124 (76.61%), Postives = 106/124 (85.48%), Query Frame = 1
Query:   22 MFLCTATSKFDFNKFGLILSKYSYKVKTNDILAGIVIGVESNYALVDLGLEQVCFLPLTEISISPR--PSVEVEPININYVGEFLILSINNKSNRIIISMKRVQSIYLWNRLRQIDFTNITIYA 387
            M L T TSKFDFNKFGLILSKYSY++K NDILAGI+IGVESNYALVDLGLEQ+CFLPL EISI P   PS   E +N N+VGEFLIL I N  NRII+S+KR++SIYLWNRLRQIDFTN+TIYA
Sbjct:    1 MPLPTVTSKFDFNKFGLILSKYSYQIKKNDILAGIIIGVESNYALVDLGLEQICFLPLKEISIYPTIDPS---ELLNTNFVGEFLILDITNNHNRIIVSLKRLESIYLWNRLRQIDFTNMTIYA 121          
BLAST of mRNA_P-fluviatile_contig89.14976.1 vs. uniprot
Match: A0A1I9LVS8_9PHAE (30S ribosomal protein S1 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVS8_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 7.770e-55
Identity = 92/122 (75.41%), Postives = 103/122 (84.43%), Query Frame = 1
Query:   22 MFLCTATSKFDFNKFGLILSKYSYKVKTNDILAGIVIGVESNYALVDLGLEQVCFLPLTEISISPRPSVEVEPININYVGEFLILSINNKSNRIIISMKRVQSIYLWNRLRQIDFTNITIYA 387
            M +C   SKFDFNKFGLILSKYSYKVKTNDILAGI+I VESNYALVDLGLE+VCFLP  EISIS   S   + + +NY+GEFLIL +NN SNRII+S+K VQSIYLWNRLRQIDF N+TIYA
Sbjct:    1 MLICVVVSKFDFNKFGLILSKYSYKVKTNDILAGIIIAVESNYALVDLGLEKVCFLPFDEISISTI-SDPSDLLKLNYIGEFLILDMNNNSNRIIVSIKGVQSIYLWNRLRQIDFANLTIYA 121          
BLAST of mRNA_P-fluviatile_contig89.14976.1 vs. uniprot
Match: A0A8F0FAQ9_9PHAE (Ribosomal protein S1 n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FAQ9_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 8.890e-54
Identity = 90/122 (73.77%), Postives = 105/122 (86.07%), Query Frame = 1
Query:   22 MFLCTATSKFDFNKFGLILSKYSYKVKTNDILAGIVIGVESNYALVDLGLEQVCFLPLTEISISPRPSVEVEPININYVGEFLILSINNKSNRIIISMKRVQSIYLWNRLRQIDFTNITIYA 387
            M L T TSKFDFNKFGLILSKYSY++K NDILAGI+IG+ESNYALVDLGLEQ+CFLPL EISI P  +   E +N N+VGEFLIL I N  +RII+S+KR++SIYLWNRLRQ+DFTN+TIYA
Sbjct:    1 MPLPTVTSKFDFNKFGLILSKYSYQIKKNDILAGIIIGLESNYALVDLGLEQICFLPLKEISIYPLVNTR-ELLNTNFVGEFLILDITNNHSRIIVSLKRLESIYLWNRLRQLDFTNMTIYA 121          
BLAST of mRNA_P-fluviatile_contig89.14976.1 vs. uniprot
Match: A0A5B9RE09_9PHAE (30S ribosomal protein S1 n=2 Tax=Laminariales TaxID=2886 RepID=A0A5B9RE09_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 7.170e-53
Identity = 89/122 (72.95%), Postives = 103/122 (84.43%), Query Frame = 1
Query:   22 MFLCTATSKFDFNKFGLILSKYSYKVKTNDILAGIVIGVESNYALVDLGLEQVCFLPLTEISISPRPSVEVEPININYVGEFLILSINNKSNRIIISMKRVQSIYLWNRLRQIDFTNITIYA 387
            M + T TSK DFNKFGLILSKYSY++K NDILAGI+IG+ESNYALVDLGLEQ+CFLPL EISI P      E +N N+VGEFLI  I N S+RII+S+KR++SIYLWNRLRQIDFTN+TIYA
Sbjct:    1 MSIPTVTSKLDFNKFGLILSKYSYQIKKNDILAGIIIGIESNYALVDLGLEQICFLPLKEISIYPTMDPR-ELLNTNFVGEFLIFDIINNSSRIIVSLKRLESIYLWNRLRQIDFTNMTIYA 121          
BLAST of mRNA_P-fluviatile_contig89.14976.1 vs. uniprot
Match: A0A8F0F8H5_MACPY (Ribosomal protein S1 n=13 Tax=Laminariales TaxID=2886 RepID=A0A8F0F8H5_MACPY)

HSP 1 Score: 173 bits (439), Expect = 8.670e-52
Identity = 88/122 (72.13%), Postives = 102/122 (83.61%), Query Frame = 1
Query:   22 MFLCTATSKFDFNKFGLILSKYSYKVKTNDILAGIVIGVESNYALVDLGLEQVCFLPLTEISISPRPSVEVEPININYVGEFLILSINNKSNRIIISMKRVQSIYLWNRLRQIDFTNITIYA 387
            M L T TSKFDFNKFGLILSKYSY++K NDILAGI+IG+ESNYALVDLGLEQ+CFLP+ EISI P      E +N N+V EFLIL I N  +RII+S+KR++SIYLWNRLRQIDF N+TIYA
Sbjct:    1 MPLTTVTSKFDFNKFGLILSKYSYQIKKNDILAGIIIGIESNYALVDLGLEQICFLPIKEISIYPTIDPR-ELLNSNFVSEFLILDITNDHSRIIVSLKRLESIYLWNRLRQIDFPNMTIYA 121          
BLAST of mRNA_P-fluviatile_contig89.14976.1 vs. uniprot
Match: A0A8F0F7Y6_9PHAE (Ribosomal protein S1 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7Y6_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 1.550e-51
Identity = 85/125 (68.00%), Postives = 106/125 (84.80%), Query Frame = 1
Query:   22 MFLCTATSKFDFNKFGLILSKYSYKVKTNDILAGIVIGVESNYALVDLGLEQVCFLPLTEISISPRPSVEVEP---ININYVGEFLILSINNKSNRIIISMKRVQSIYLWNRLRQIDFTNITIYA 387
            M L   TSKFDFNKFGLILSKYSY++K NDILAGI+IG+ESNYALVDLGL+Q+CFLP+ E++I     + V+P   +NIN++GEFLIL+I    +RII+S+KR++SIYLWNRLRQ+DFTNITIYA
Sbjct:    1 MLLSIVTSKFDFNKFGLILSKYSYQIKKNDILAGIIIGIESNYALVDLGLDQICFLPIEELAIY----LTVDPHKLLNINFIGEFLILNITKNQSRIILSLKRIESIYLWNRLRQLDFTNITIYA 121          
BLAST of mRNA_P-fluviatile_contig89.14976.1 vs. uniprot
Match: A0A8F0F9U3_9PHAE (Ribosomal protein S1 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9U3_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 1.740e-51
Identity = 87/122 (71.31%), Postives = 101/122 (82.79%), Query Frame = 1
Query:   22 MFLCTATSKFDFNKFGLILSKYSYKVKTNDILAGIVIGVESNYALVDLGLEQVCFLPLTEISISPRPSVEVEPININYVGEFLILSINNKSNRIIISMKRVQSIYLWNRLRQIDFTNITIYA 387
            M L    S FDFNKFGL+LSKYSY+ K NDILAGIVIG+ESNYALVD GLEQ+CFLPL EISI P   +  E +NIN++GEF IL I N+ NRIIIS++R++SIYLWNRLRQIDF+NITIYA
Sbjct:    1 MPLSIVPSTFDFNKFGLLLSKYSYQAKKNDILAGIVIGIESNYALVDFGLEQICFLPLKEISICPTLDLR-EFLNINFIGEFSILDITNRQNRIIISLRRIESIYLWNRLRQIDFSNITIYA 121          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig89.14976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B7EVE1_9PHAE2.310e-5979.5130S ribosomal protein S1 n=1 Tax=Cladosiphon okamu... [more]
D1J709_ECTSI9.030e-5982.79Chloroplast 30S ribosomal protein S1 n=2 Tax=Ectoc... [more]
A0A5A4MJF2_9PHAE1.870e-5878.6930S ribosomal protein S1 n=5 Tax=Scytosiphonaceae ... [more]
A0A0R6M9B1_UNDPI5.480e-5576.6130S ribosomal protein S1 n=11 Tax=Laminariales Tax... [more]
A0A1I9LVS8_9PHAE7.770e-5575.4130S ribosomal protein S1 n=1 Tax=Pleurocladia lacu... [more]
A0A8F0FAQ9_9PHAE8.890e-5473.77Ribosomal protein S1 n=2 Tax=Ecklonia TaxID=105406... [more]
A0A5B9RE09_9PHAE7.170e-5372.9530S ribosomal protein S1 n=2 Tax=Laminariales TaxI... [more]
A0A8F0F8H5_MACPY8.670e-5272.13Ribosomal protein S1 n=13 Tax=Laminariales TaxID=2... [more]
A0A8F0F7Y6_9PHAE1.550e-5168.00Ribosomal protein S1 n=2 Tax=Laminariales TaxID=28... [more]
A0A8F0F9U3_9PHAE1.740e-5171.31Ribosomal protein S1 n=1 Tax=Chorda asiatica TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig89contigP-fluviatile_contig89:73003..73389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score73.6
Seed ortholog evalue7.4e-11
Seed eggNOG ortholog1496688.ER33_14065
Preferred namerps1a
KEGG koko:K02945
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
EggNOG free text desc.Ribosomal protein S1
EggNOG OGs1G11B@1117,22S8X@167375,COG0539@1,COG0539@2
COG Functional cat.J
Best tax levelCyanobium
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons1
Model size388
Cds size366
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817300.1931782-UTR-P-fluviatile_contig89:73002..730231622817300.1931782-UTR-P-fluviatile_contig89:73002..73023Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 73003..73023 +
1693571985.384622-UTR-P-fluviatile_contig89:73002..730231693571985.384622-UTR-P-fluviatile_contig89:73002..73023Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 73003..73023 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817300.205125-CDS-P-fluviatile_contig89:73023..733891622817300.205125-CDS-P-fluviatile_contig89:73023..73389Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 73024..73389 +
1693571985.394461-CDS-P-fluviatile_contig89:73023..733891693571985.394461-CDS-P-fluviatile_contig89:73023..73389Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 73024..73389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig89.14976.1prot_P-fluviatile_contig89.14976.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig89 73024..73389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig89.14976.1

>prot_P-fluviatile_contig89.14976.1 ID=prot_P-fluviatile_contig89.14976.1|Name=mRNA_P-fluviatile_contig89.14976.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=122bp
MFLCTATSKFDFNKFGLILSKYSYKVKTNDILAGIVIGVESNYALVDLGL
EQVCFLPLTEISISPRPSVEVEPININYVGEFLILSINNKSNRIIISMKR
VQSIYLWNRLRQIDFTNITIYA
back to top

mRNA from alignment at P-fluviatile_contig89:73003..73389+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig89.14976.1 ID=mRNA_P-fluviatile_contig89.14976.1|Name=mRNA_P-fluviatile_contig89.14976.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=387bp|location=Sequence derived from alignment at P-fluviatile_contig89:73003..73389+ (Porterinema fluviatile SAG_2381)
TAAAAACCGAGAGGAAAAAGTATGTTTTTATGTACCGCAACATCAAAATT TGATTTTAATAAATTTGGCCTAATTTTATCAAAATATAGTTATAAAGTAA AAACTAATGATATATTAGCAGGTATTGTAATAGGAGTAGAATCCAATTAT GCGCTAGTTGATCTTGGATTAGAACAAGTTTGTTTTTTACCCTTAACAGA AATTTCTATTTCTCCAAGACCTAGTGTTGAAGTCGAACCCATAAACATTA ATTATGTTGGAGAATTTTTAATCCTTAGTATTAATAATAAATCTAATCGA ATTATTATTTCAATGAAACGAGTACAGTCTATTTATTTATGGAATCGTTT AAGACAAATAGATTTTACGAATATAACGATTTACGCG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig89:73003..73389+

>mRNA_P-fluviatile_contig89.14976.1 ID=mRNA_P-fluviatile_contig89.14976.1|Name=mRNA_P-fluviatile_contig89.14976.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=732bp|location=Sequence derived from alignment at P-fluviatile_contig89:73003..73389+ (Porterinema fluviatile SAG_2381)
ATGTTTTTATGTACCGCAACATCAAAATTTGATTTTAATAAATTTGGCCT
AATTTTATCAAAATATAGTTATAAAGTAAAAACTAATGATATATTAGCAG
GTATTGTAATAGGAGTAGAATCCAATTATGCGCTAGTTGATCTTGGATTA
GAACAAGTTTGTTTTTTACCCTTAACAGAAATTTCTATTTCTCCAAGACC
TAGTGTTGAAGTCGAACCCATAAACATTAATTATGTTGGAGAATTTTTAA
TCCTTAGTATTAATAATAAATCTAATCGAATTATTATTTCAATGAAACGA
GTACAGTCTATTTATTTATGGAATCGTTTAAGACAAATAGATTTTACGAA
TATAACGATTTACGCGATGTTTTTATGTACCGCAACATCAAAATTTGATT
TTAATAAATTTGGCCTAATTTTATCAAAATATAGTTATAAAGTAAAAACT
AATGATATATTAGCAGGTATTGTAATAGGAGTAGAATCCAATTATGCGCT
AGTTGATCTTGGATTAGAACAAGTTTGTTTTTTACCCTTAACAGAAATTT
CTATTTCTCCAAGACCTAGTGTTGAAGTCGAACCCATAAACATTAATTAT
GTTGGAGAATTTTTAATCCTTAGTATTAATAATAAATCTAATCGAATTAT
TATTTCAATGAAACGAGTACAGTCTATTTATTTATGGAATCGTTTAAGAC
AAATAGATTTTACGAATATAACGATTTACGCG
back to top