mRNA_P-fluviatile_contig89.14972.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig89.14972.1
Unique NamemRNA_P-fluviatile_contig89.14972.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig89.14972.1 vs. uniprot
Match: A0A7S2H3H0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H3H0_9STRA)

HSP 1 Score: 300 bits (769), Expect = 2.070e-98
Identity = 147/178 (82.58%), Postives = 165/178 (92.70%), Query Frame = 3
Query:    3 ITGRGTVATGKIDRGVIKVGEQVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDNVGILLRGLQKTEIERGMVLAKPGTITPHNTFESELYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGEILSFMTDEGEKTLMVMPGDRVKMTAKLISLIAIEEGMRFAIREGGRTIGAGVVSKII 536
            ITGRGTVATG+I+RGVI VG+ +++VGLGDT+STTVTGVEMFQKTLD G+AGDNVGILLRGLQKT+IERGMVL+KPGTITPH  FE E+YILTKEEGGRHTPFF GYRPQFYVRTTDVTG+I +F +DEG+   MVMPGDR+KMTA+LIS IAIEEGMRFAIREGGRTIGAGVVSKI+
Sbjct:  146 ITGRGTVATGRIERGVINVGDTIEIVGLGDTQSTTVTGVEMFQKTLDSGMAGDNVGILLRGLQKTDIERGMVLSKPGTITPHTEFEGEVYILTKEEGGRHTPFFTGYRPQFYVRTTDVTGDIKAFTSDEGDDVDMVMPGDRIKMTAELISAIAIEEGMRFAIREGGRTIGAGVVSKIL 323          
BLAST of mRNA_P-fluviatile_contig89.14972.1 vs. uniprot
Match: A0A7S6ZPC8_9STRA (Elongation factor Tu, chloroplastic n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A7S6ZPC8_9STRA)

HSP 1 Score: 296 bits (757), Expect = 1.980e-95
Identity = 146/177 (82.49%), Postives = 162/177 (91.53%), Query Frame = 3
Query:    3 ITGRGTVATGKIDRGVIKVGEQVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDNVGILLRGLQKTEIERGMVLAKPGTITPHNTFESELYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGEILSFMTDEGEKTLMVMPGDRVKMTAKLISLIAIEEGMRFAIREGGRTIGAGVVSKI 533
            ITGRGTVATG+I+RGV+KVGE V+LVGLG+T+ST VTGVEMFQKTL+EG AGDNVGILLRG+QK EIERGMVLA+PGTITPH +FESE+YILTKEEGGRHTPFF GYRPQFYVRTTDVTG+I SF  D+G    MVMPGDR+KM A+LI+ IAIEEGMRFAIREGGRTIGAGVVSKI
Sbjct:  231 ITGRGTVATGRIERGVVKVGETVELVGLGNTRSTIVTGVEMFQKTLEEGFAGDNVGILLRGIQKNEIERGMVLAQPGTITPHTSFESEVYILTKEEGGRHTPFFSGYRPQFYVRTTDVTGQIKSFTADDGSDVEMVMPGDRIKMNAELIAAIAIEEGMRFAIREGGRTIGAGVVSKI 407          
BLAST of mRNA_P-fluviatile_contig89.14972.1 vs. uniprot
Match: UPI001FCCE794 (elongation factor Tu n=1 Tax=Glaucosphaera vacuolata TaxID=38265 RepID=UPI001FCCE794)

HSP 1 Score: 294 bits (753), Expect = 7.960e-95
Identity = 139/179 (77.65%), Postives = 166/179 (92.74%), Query Frame = 3
Query:    3 ITGRGTVATGKIDRGVIKVGEQVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDNVGILLRGLQKTEIERGMVLAKPGTITPHNTFESELYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGEILSFMTDEGEKTLMVMPGDRVKMTAKLISLIAIEEGMRFAIREGGRTIGAGVVSKIIQ 539
            ITGRGTVATG+I+RG IKVG+ +++VGL DT++TT+TG+EMFQKTLDEG+AGDN+GILLRG+QKT+IERGMVLA+PGTITPH +FE+E+Y+LTKEEGGRHTPFFPGYRPQFYVRTTDVTG I +F  D+G K  MVMPGDR+KMT +LI+ IAIE+GMRFAIREGGRTIGAGVVSKI++
Sbjct:  231 ITGRGTVATGRIERGSIKVGDSIEIVGLKDTRTTTITGLEMFQKTLDEGIAGDNIGILLRGIQKTDIERGMVLAQPGTITPHTSFEAEVYVLTKEEGGRHTPFFPGYRPQFYVRTTDVTGVISTFTADDGSKAEMVMPGDRIKMTTELINPIAIEKGMRFAIREGGRTIGAGVVSKILK 409          
BLAST of mRNA_P-fluviatile_contig89.14972.1 vs. uniprot
Match: A0A2P8WK29_9CYAN (Elongation factor Tu (Fragment) n=1 Tax=filamentous cyanobacterium CCP5 TaxID=2107701 RepID=A0A2P8WK29_9CYAN)

HSP 1 Score: 285 bits (730), Expect = 3.490e-94
Identity = 138/179 (77.09%), Postives = 161/179 (89.94%), Query Frame = 3
Query:    3 ITGRGTVATGKIDRGVIKVGEQVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDNVGILLRGLQKTEIERGMVLAKPGTITPHNTFESELYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGEILSFMTDEGEKTLMVMPGDRVKMTAKLISLIAIEEGMRFAIREGGRTIGAGVVSKIIQ 539
            ITGRGTVATG+I+RG ++VG+ V+LVG+ DT+STTVTGVEMFQK LDEG+AGDNVG+LLRGLQKT+IERGMVLAKPG+ITPH  FESE+YIL KEEGGRHTPFF GY+PQFYVRTTDVTG I +F  D+G    MVMPGDR+KMT +LI+ IAIE+GMRFAIREGGRT+GAGVVSKI++
Sbjct:   30 ITGRGTVATGRIERGKVRVGDTVELVGIRDTRSTTVTGVEMFQKILDEGMAGDNVGVLLRGLQKTDIERGMVLAKPGSITPHTQFESEVYILKKEEGGRHTPFFSGYKPQFYVRTTDVTGTIKAFTADDGSAAEMVMPGDRIKMTVELINPIAIEQGMRFAIREGGRTVGAGVVSKILK 208          
BLAST of mRNA_P-fluviatile_contig89.14972.1 vs. uniprot
Match: EFTU_SYNE7 (Elongation factor Tu n=3 Tax=Synechococcus elongatus TaxID=32046 RepID=EFTU_SYNE7)

HSP 1 Score: 292 bits (748), Expect = 4.520e-94
Identity = 141/179 (78.77%), Postives = 162/179 (90.50%), Query Frame = 3
Query:    3 ITGRGTVATGKIDRGVIKVGEQVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDNVGILLRGLQKTEIERGMVLAKPGTITPHNTFESELYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGEILSFMTDEGEKTLMVMPGDRVKMTAKLISLIAIEEGMRFAIREGGRTIGAGVVSKIIQ 539
            ITGRGTVATG+I+RG +KVGE +++VGL DT+STTVTGVEMFQKTLDEG+AGDNVG+LLRG+QKT+IERGMVLAKPG+ITPH  FESE+Y+L KEEGGRHTPFFPGYRPQFYVRTTDVTG I  F  D+G    MV+PGDR+KMT +LI+ IAIE+GMRFAIREGGRTIGAGVVSKI+Q
Sbjct:  231 ITGRGTVATGRIERGSVKVGETIEIVGLRDTRSTTVTGVEMFQKTLDEGLAGDNVGLLLRGIQKTDIERGMVLAKPGSITPHTKFESEVYVLKKEEGGRHTPFFPGYRPQFYVRTTDVTGAISDFTADDGSAAEMVIPGDRIKMTVELINPIAIEQGMRFAIREGGRTIGAGVVSKILQ 409          
BLAST of mRNA_P-fluviatile_contig89.14972.1 vs. uniprot
Match: A0A516ZAG0_9STRA (Elongation factor Tu, chloroplastic n=4 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZAG0_9STRA)

HSP 1 Score: 292 bits (748), Expect = 4.520e-94
Identity = 142/178 (79.78%), Postives = 161/178 (90.45%), Query Frame = 3
Query:    3 ITGRGTVATGKIDRGVIKVGEQVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDNVGILLRGLQKTEIERGMVLAKPGTITPHNTFESELYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGEILSFMTDEGEKTLMVMPGDRVKMTAKLISLIAIEEGMRFAIREGGRTIGAGVVSKII 536
            ITGRGTVATG+I+RG+I VG+ +++VGLGDT++TTVTGVEMFQKTLD G+AGDNVGILLRG+QKT+IERGMVL+KPGTITPH  FE E+YILTKEEGGRHTPFF GYRPQFYVRTTDVTG I +F  D+G    MVMPGDR+KMTA+LIS IAIE GMRFAIREGGRTIGAGVVSKI+
Sbjct:  231 ITGRGTVATGRIERGIINVGDTIEIVGLGDTQTTTVTGVEMFQKTLDSGMAGDNVGILLRGVQKTDIERGMVLSKPGTITPHTLFEGEVYILTKEEGGRHTPFFTGYRPQFYVRTTDVTGNIKAFTADDGTDVEMVMPGDRIKMTAELISAIAIEAGMRFAIREGGRTIGAGVVSKIL 408          
BLAST of mRNA_P-fluviatile_contig89.14972.1 vs. uniprot
Match: UPI0019E6975F (Elongation factor Tu n=1 Tax=Geminocystis sp. M7585_C2015_104 TaxID=2774334 RepID=UPI0019E6975F)

HSP 1 Score: 291 bits (745), Expect = 1.280e-93
Identity = 140/179 (78.21%), Postives = 161/179 (89.94%), Query Frame = 3
Query:    3 ITGRGTVATGKIDRGVIKVGEQVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDNVGILLRGLQKTEIERGMVLAKPGTITPHNTFESELYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGEILSFMTDEGEKTLMVMPGDRVKMTAKLISLIAIEEGMRFAIREGGRTIGAGVVSKIIQ 539
            ITGRGTVATG+I+RG +KVG+ V++VGLG+T++TTVTGVEMFQKTLDEG+AGDNVG+LLRG+QK EIERGMVLAKPGTITPH  FE+E+Y+L KEEGGRHTPFF GYRPQFYVRTTDVTG I  F  D+G K  MVMPGDR++MT +LIS IAIE+GMRFAIREGGRTIGAG VSKII+
Sbjct:  231 ITGRGTVATGRIERGRVKVGDTVEIVGLGETRTTTVTGVEMFQKTLDEGIAGDNVGVLLRGIQKNEIERGMVLAKPGTITPHTKFEAEVYVLKKEEGGRHTPFFTGYRPQFYVRTTDVTGTITDFTADDGSKPEMVMPGDRIRMTVELISPIAIEQGMRFAIREGGRTIGAGAVSKIIE 409          
BLAST of mRNA_P-fluviatile_contig89.14972.1 vs. uniprot
Match: A0A1C9CCX7_9RHOD (Elongation factor Tu n=10 Tax=Rhodophyta TaxID=2763 RepID=A0A1C9CCX7_9RHOD)

HSP 1 Score: 291 bits (744), Expect = 1.820e-93
Identity = 137/178 (76.97%), Postives = 163/178 (91.57%), Query Frame = 3
Query:    3 ITGRGTVATGKIDRGVIKVGEQVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDNVGILLRGLQKTEIERGMVLAKPGTITPHNTFESELYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGEILSFMTDEGEKTLMVMPGDRVKMTAKLISLIAIEEGMRFAIREGGRTIGAGVVSKII 536
            ITGRGTVATG+I+RG++KVG+ +++VGL DT++TT+TG+EMFQKTLDEG+AGDN+GILLRG+QK +IERGMVLA+PGTITPH  FE+E+Y+LTKEEGGRHTPFFPGYRPQFYVRTTDVTG I  F  D+G    MVMPGDR+KMTA+LI+ IAIE+GMRFAIREGGRT+GAGVVSKII
Sbjct:  231 ITGRGTVATGRIERGIVKVGDSIEIVGLRDTQTTTITGLEMFQKTLDEGMAGDNIGILLRGVQKKDIERGMVLAQPGTITPHTEFEAEVYVLTKEEGGRHTPFFPGYRPQFYVRTTDVTGTISQFTADDGSTAEMVMPGDRIKMTAELINPIAIEQGMRFAIREGGRTVGAGVVSKII 408          
BLAST of mRNA_P-fluviatile_contig89.14972.1 vs. uniprot
Match: C6KIM9_AURAN (Elongation factor Tu, chloroplastic n=4 Tax=Pelagomonadales TaxID=54409 RepID=C6KIM9_AURAN)

HSP 1 Score: 291 bits (744), Expect = 1.820e-93
Identity = 140/178 (78.65%), Postives = 161/178 (90.45%), Query Frame = 3
Query:    3 ITGRGTVATGKIDRGVIKVGEQVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDNVGILLRGLQKTEIERGMVLAKPGTITPHNTFESELYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGEILSFMTDEGEKTLMVMPGDRVKMTAKLISLIAIEEGMRFAIREGGRTIGAGVVSKII 536
            ITGRGTV+TG+I+RG +KVGE V++VGLGDT+ TTVTG+EMFQKTL+EG+AGDNVG+LLRG+QKT+IERGMVLA  GTITPH  FE+E+YILTKEEGGRHTPFF GYRPQFYVRTTDVTG I  F  D+G +  MVMPGDR+KMTA+LIS IAIE+GMRFAIREGGRTIGAGVVSKI+
Sbjct:  231 ITGRGTVSTGRIERGTVKVGETVEIVGLGDTRETTVTGIEMFQKTLEEGLAGDNVGLLLRGIQKTDIERGMVLAASGTITPHTLFEAEVYILTKEEGGRHTPFFTGYRPQFYVRTTDVTGNIKQFTADDGTEVEMVMPGDRIKMTAELISAIAIEDGMRFAIREGGRTIGAGVVSKIV 408          
BLAST of mRNA_P-fluviatile_contig89.14972.1 vs. uniprot
Match: A0A1Z1MKL8_9FLOR (Elongation factor Tu, chloroplastic n=3 Tax=Ceramiales TaxID=2802 RepID=A0A1Z1MKL8_9FLOR)

HSP 1 Score: 290 bits (743), Expect = 2.570e-93
Identity = 136/179 (75.98%), Postives = 164/179 (91.62%), Query Frame = 3
Query:    3 ITGRGTVATGKIDRGVIKVGEQVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDNVGILLRGLQKTEIERGMVLAKPGTITPHNTFESELYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGEILSFMTDEGEKTLMVMPGDRVKMTAKLISLIAIEEGMRFAIREGGRTIGAGVVSKIIQ 539
            ITGRGTVATG+I+RG++KVG+ +++VGL DTK+TT+TG+EMFQKTLDEG+AGDN+GILLRG+QK++I+RGMVLA+PGTITPH  FE+E+YILTKEEGGRHTPFFPGYRPQFYVRTTDVTG I  F  D+G    MVMPGDR+KM AKLI+ IAIE+GMRFAIREGG+T+GAGVVSKI++
Sbjct:  231 ITGRGTVATGRIERGIVKVGDTIEIVGLQDTKTTTITGLEMFQKTLDEGMAGDNIGILLRGVQKSDIQRGMVLAEPGTITPHTEFEAEVYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGTITKFKADDGSTAEMVMPGDRIKMCAKLINPIAIEQGMRFAIREGGKTVGAGVVSKILE 409          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig89.14972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2H3H0_9STRA2.070e-9882.58Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S6ZPC8_9STRA1.980e-9582.49Elongation factor Tu, chloroplastic n=2 Tax=Strame... [more]
UPI001FCCE7947.960e-9577.65elongation factor Tu n=1 Tax=Glaucosphaera vacuola... [more]
A0A2P8WK29_9CYAN3.490e-9477.09Elongation factor Tu (Fragment) n=1 Tax=filamentou... [more]
EFTU_SYNE74.520e-9478.77Elongation factor Tu n=3 Tax=Synechococcus elongat... [more]
A0A516ZAG0_9STRA4.520e-9479.78Elongation factor Tu, chloroplastic n=4 Tax=Dictyo... [more]
UPI0019E6975F1.280e-9378.21Elongation factor Tu n=1 Tax=Geminocystis sp. M758... [more]
A0A1C9CCX7_9RHOD1.820e-9376.97Elongation factor Tu n=10 Tax=Rhodophyta TaxID=276... [more]
C6KIM9_AURAN1.820e-9378.65Elongation factor Tu, chloroplastic n=4 Tax=Pelago... [more]
A0A1Z1MKL8_9FLOR2.570e-9375.98Elongation factor Tu, chloroplastic n=3 Tax=Cerami... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig89contigP-fluviatile_contig89:59023..59876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score270.8
Seed ortholog evalue3.6e-70
Seed eggNOG ortholog2880.D1J725
Preferred nametufA
KEGG koko:K02358
GOsGO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0009295,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0016020,GO:0020011,GO:0031967,GO:0031974,GO:0031975,GO:0031976,GO:0031981,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048046,GO:0055035,GO:0070013
EggNOG free text desc.translation elongation factor activity
EggNOG OGsCOG0050@1,KOG0460@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size854
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig89.14972.1prot_P-fluviatile_contig89.14972.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig89 59145..59564 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817300.0789225-UTR-P-fluviatile_contig89:59022..591441622817300.0789225-UTR-P-fluviatile_contig89:59022..59144Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 59023..59144 +
1693571985.3232691-UTR-P-fluviatile_contig89:59022..591441693571985.3232691-UTR-P-fluviatile_contig89:59022..59144Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 59023..59144 +
1622817300.1007197-UTR-P-fluviatile_contig89:59564..598761622817300.1007197-UTR-P-fluviatile_contig89:59564..59876Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 59565..59876 +
1693571985.3453786-UTR-P-fluviatile_contig89:59564..598761693571985.3453786-UTR-P-fluviatile_contig89:59564..59876Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 59565..59876 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817300.0898385-CDS-P-fluviatile_contig89:59144..595641622817300.0898385-CDS-P-fluviatile_contig89:59144..59564Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 59145..59564 +
1693571985.334089-CDS-P-fluviatile_contig89:59144..595641693571985.334089-CDS-P-fluviatile_contig89:59144..59564Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 59145..59564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig89.14972.1

>prot_P-fluviatile_contig89.14972.1 ID=prot_P-fluviatile_contig89.14972.1|Name=mRNA_P-fluviatile_contig89.14972.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=140bp
MFQKTLDEGVAGDNVGILLRGLQKTEIERGMVLAKPGTITPHNTFESELY
ILTKEEGGRHTPFFPGYRPQFYVRTTDVTGEILSFMTDEGEKTLMVMPGD
RVKMTAKLISLIAIEEGMRFAIREGGRTIGAGVVSKIIQ*
back to top

mRNA from alignment at P-fluviatile_contig89:59023..59876+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig89.14972.1 ID=mRNA_P-fluviatile_contig89.14972.1|Name=mRNA_P-fluviatile_contig89.14972.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=854bp|location=Sequence derived from alignment at P-fluviatile_contig89:59023..59876+ (Porterinema fluviatile SAG_2381)
CAATTACTGGTCGAGGTACAGTAGCTACTGGTAAAATTGATCGTGGAGTT ATAAAAGTTGGAGAACAAGTAGATTTAGTTGGCTTAGGTGATACAAAATC AACAACGGTAACTGGTGTTGAAATGTTCCAAAAAACACTAGATGAAGGAG TTGCTGGTGATAATGTAGGAATTTTATTGCGTGGACTACAAAAGACTGAA ATAGAGCGTGGAATGGTTTTAGCTAAACCAGGAACAATAACTCCGCATAA TACGTTTGAATCTGAACTTTACATTTTAACAAAAGAAGAAGGCGGTCGTC ATACTCCTTTTTTCCCAGGTTATAGACCTCAATTTTATGTACGAACAACA GATGTGACTGGAGAAATTTTAAGCTTTATGACTGATGAAGGTGAAAAAAC ATTAATGGTTATGCCTGGTGATCGTGTAAAAATGACAGCAAAATTAATCT CTTTAATTGCTATTGAAGAAGGTATGAGATTTGCTATTCGTGAGGGTGGT AGAACTATTGGTGCTGGCGTTGTTTCAAAAATTATTCAATAAATAATATC TTTATGTCAAAAGAAAAAATACGCATTACTTTACAGTCTTTTAATCATTT AATTTTAAATGACTCTTGTAAAAAAATATCAGATGTTTTAGTTAATGAAA AATCGGTTTTAAAGGTTGCAGGTCCTATTTCTTTCCCTACAAAGAAAAGA TCATATTGTGTCTTAAGATCCCCTCATGTAAATAAAGATTCTCGTGAACA ATTTGAAATTCGTCGCTATAAAAAGATTATTGATCTTGAATCAAATTCAA AAGAAATAATAAATATTTTGCTCTCATTAGATCTTTCTCCTGGAGTTTCG ACAG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig89:59023..59876+

>mRNA_P-fluviatile_contig89.14972.1 ID=mRNA_P-fluviatile_contig89.14972.1|Name=mRNA_P-fluviatile_contig89.14972.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=840bp|location=Sequence derived from alignment at P-fluviatile_contig89:59023..59876+ (Porterinema fluviatile SAG_2381)
ATGTTCCAAAAAACACTAGATGAAGGAGTTGCTGGTGATAATGTAGGAAT
TTTATTGCGTGGACTACAAAAGACTGAAATAGAGCGTGGAATGGTTTTAG
CTAAACCAGGAACAATAACTCCGCATAATACGTTTGAATCTGAACTTTAC
ATTTTAACAAAAGAAGAAGGCGGTCGTCATACTCCTTTTTTCCCAGGTTA
TAGACCTCAATTTTATGTACGAACAACAGATGTGACTGGAGAAATTTTAA
GCTTTATGACTGATGAAGGTGAAAAAACATTAATGGTTATGCCTGGTGAT
CGTGTAAAAATGACAGCAAAATTAATCTCTTTAATTGCTATTGAAGAAGG
TATGAGATTTGCTATTCGTGAGGGTGGTAGAACTATTGGTGCTGGCGTTG
TTTCAAAAATTATTCAATAAATGTTCCAAAAAACACTAGATGAAGGAGTT
GCTGGTGATAATGTAGGAATTTTATTGCGTGGACTACAAAAGACTGAAAT
AGAGCGTGGAATGGTTTTAGCTAAACCAGGAACAATAACTCCGCATAATA
CGTTTGAATCTGAACTTTACATTTTAACAAAAGAAGAAGGCGGTCGTCAT
ACTCCTTTTTTCCCAGGTTATAGACCTCAATTTTATGTACGAACAACAGA
TGTGACTGGAGAAATTTTAAGCTTTATGACTGATGAAGGTGAAAAAACAT
TAATGGTTATGCCTGGTGATCGTGTAAAAATGACAGCAAAATTAATCTCT
TTAATTGCTATTGAAGAAGGTATGAGATTTGCTATTCGTGAGGGTGGTAG
AACTATTGGTGCTGGCGTTGTTTCAAAAATTATTCAATAA
back to top