mRNA_P-fluviatile_contig89.14969.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig89.14969.1
Unique NamemRNA_P-fluviatile_contig89.14969.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig89.14969.1 vs. uniprot
Match: A0A344PF45_9PHAE (30S ribosomal protein S9 n=2 Tax=Ectocarpales TaxID=2877 RepID=A0A344PF45_9PHAE)

HSP 1 Score: 249 bits (636), Expect = 2.840e-81
Identity = 124/133 (93.23%), Postives = 130/133 (97.74%), Query Frame = 1 
Query:  268 NVYGIGRKKESTAIVYLVPFSEATSSITCEVNGHKAEHYFQQNFTYLNQITLPLKKVKLEKKYKIIANVKGGGLTGQADSIKLAIARALCKVDKVNFRPILKFEGFLKRDARIKERRKYGLKKARKASQYSKR 666
            N+YGIGRKKESTAIVYLVPFSE+TS ITCEVNGHKAEHYFQQNFTYLNQI LPLKKVKLEKKYK+IA+VKGGGLTGQADSI+L IARALCK+DKVNFRPILKFEGFLKRDARIKERRKYGLKKARKASQYSKR
Sbjct:   10 NIYGIGRKKESTAIVYLVPFSESTSEITCEVNGHKAEHYFQQNFTYLNQINLPLKKVKLEKKYKVIAHVKGGGLTGQADSIRLGIARALCKIDKVNFRPILKFEGFLKRDARIKERRKYGLKKARKASQYSKR 142
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BLAST of mRNA_P-fluviatile_contig89.14969.1 vs. uniprot
Match: A0A0R6M0L6_UNDPI (30S ribosomal protein S9, chloroplastic n=30 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M0L6_UNDPI)

HSP 1 Score: 244 bits (622), Expect = 3.810e-79
Identity = 122/133 (91.73%), Postives = 130/133 (97.74%), Query Frame = 1 
Query:  268 NVYGIGRKKESTAIVYLVPFSEATSSITCEVNGHKAEHYFQQNFTYLNQITLPLKKVKLEKKYKIIANVKGGGLTGQADSIKLAIARALCKVDKVNFRPILKFEGFLKRDARIKERRKYGLKKARKASQYSKR 666
            ++YGIGRKKESTAIVYLVPF+E+TS ITCEVNGHKAE YFQQNFTYLNQI+LPLKKVKL+KKYKIIANVKGGGLTGQADSI+L IARALCKVDK+NFRPILKFEGFLKRDARIKERRKYGLKKARKASQYSKR
Sbjct:   10 HIYGIGRKKESTAIVYLVPFTESTSQITCEVNGHKAEQYFQQNFTYLNQISLPLKKVKLDKKYKIIANVKGGGLTGQADSIRLGIARALCKVDKLNFRPILKFEGFLKRDARIKERRKYGLKKARKASQYSKR 142
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BLAST of mRNA_P-fluviatile_contig89.14969.1 vs. uniprot
Match: D1J729_ECTSI (30S ribosomal protein S9, chloroplastic n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J729_ECTSI)

HSP 1 Score: 242 bits (617), Expect = 2.190e-78
Identity = 122/133 (91.73%), Postives = 128/133 (96.24%), Query Frame = 1 
Query:  268 NVYGIGRKKESTAIVYLVPFSEATSSITCEVNGHKAEHYFQQNFTYLNQITLPLKKVKLEKKYKIIANVKGGGLTGQADSIKLAIARALCKVDKVNFRPILKFEGFLKRDARIKERRKYGLKKARKASQYSKR 666
            +VYGIGRKKE+TAIVYLVPFSE TS + CEVNG KA+ YFQQNFTYLNQITLPLKKVKLEKKYKIIANVKGGGLTGQADSI+LAIARALCK+DKVNFRPILKFEGFLKRDARIKERRKYGLKKARKASQYSKR
Sbjct:   10 DVYGIGRKKEATAIVYLVPFSEVTSQVNCEVNGQKADSYFQQNFTYLNQITLPLKKVKLEKKYKIIANVKGGGLTGQADSIRLAIARALCKIDKVNFRPILKFEGFLKRDARIKERRKYGLKKARKASQYSKR 142
[Close]
BLAST of mRNA_P-fluviatile_contig89.14969.1 vs. uniprot
Match: A0A8F0F9Q4_9PHAE (Ribosomal protein S9 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9Q4_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 2.070e-76
Identity = 122/132 (92.42%), Postives = 125/132 (94.70%), Query Frame = 1 
Query:  271 VYGIGRKKESTAIVYLVPFSEATSSITCEVNGHKAEHYFQQNFTYLNQITLPLKKVKLEKKYKIIANVKGGGLTGQADSIKLAIARALCKVDKVNFRPILKFEGFLKRDARIKERRKYGLKKARKASQYSKR 666
            VYGIGRKKESTAIVYLVPFS A S ITCEVNGHKAE YFQQNFTYLNQI LPLKKVKL+K+YKIIANVKGGGLTGQADSIKL IARALCKVDK+NFRPILK EGFLKRDARIKERRKYGLKKARKASQYSKR
Sbjct:   11 VYGIGRKKESTAIVYLVPFSGADSQITCEVNGHKAEQYFQQNFTYLNQIDLPLKKVKLDKEYKIIANVKGGGLTGQADSIKLGIARALCKVDKLNFRPILKAEGFLKRDARIKERRKYGLKKARKASQYSKR 142
[Close]
BLAST of mRNA_P-fluviatile_contig89.14969.1 vs. uniprot
Match: A0A1I9LVW1_9PHAE (30S ribosomal protein S9, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVW1_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 1.680e-75
Identity = 117/132 (88.64%), Postives = 126/132 (95.45%), Query Frame = 1 
Query:  271 VYGIGRKKESTAIVYLVPFSEATSSITCEVNGHKAEHYFQQNFTYLNQITLPLKKVKLEKKYKIIANVKGGGLTGQADSIKLAIARALCKVDKVNFRPILKFEGFLKRDARIKERRKYGLKKARKASQYSKR 666
            +YGIGRKKESTAIVYL+PFS++TS I CEVNG+KAE+YFQ+NFTYLN I LPLKKVKLEKKYKIIANVKGGGLTGQADSI+LAIARALCK+DKVNFRPILKF GFLKRDARIKERRKYGLKKARKA QYSKR
Sbjct:   11 IYGIGRKKESTAIVYLIPFSDSTSQINCEVNGYKAENYFQENFTYLNHINLPLKKVKLEKKYKIIANVKGGGLTGQADSIRLAIARALCKIDKVNFRPILKFGGFLKRDARIKERRKYGLKKARKAPQYSKR 142
[Close]
BLAST of mRNA_P-fluviatile_contig89.14969.1 vs. uniprot
Match: D1GJQ9_FUCVE (30S ribosomal protein S9, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJQ9_FUCVE)

HSP 1 Score: 225 bits (574), Expect = 7.420e-72
Identity = 111/133 (83.46%), Postives = 123/133 (92.48%), Query Frame = 1 
Query:  268 NVYGIGRKKESTAIVYLVPFSEATSSITCEVNGHKAEHYFQQNFTYLNQITLPLKKVKLEKKYKIIANVKGGGLTGQADSIKLAIARALCKVDKVNFRPILKFEGFLKRDARIKERRKYGLKKARKASQYSKR 666
            ++YGIGR+KESTAIVYL+PFSE+TS +  EVNGHKAE YFQQNF YLN+I LPLK VKLEKKYK+IANVKGGGLTGQADSI+L I RALCK+DK+NFRP+LKF GFLKRDARIKERRKYGLKKARKASQYSKR
Sbjct:   10 HIYGIGRRKESTAIVYLIPFSESTSQLIAEVNGHKAEQYFQQNFIYLNKINLPLKLVKLEKKYKVIANVKGGGLTGQADSIQLGITRALCKLDKLNFRPVLKFNGFLKRDARIKERRKYGLKKARKASQYSKR 142
[Close]
BLAST of mRNA_P-fluviatile_contig89.14969.1 vs. uniprot
Match: A0A8F0FB61_9PHAE (Ribosomal protein S9 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB61_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 7.420e-72
Identity = 115/132 (87.12%), Postives = 123/132 (93.18%), Query Frame = 1 
Query:  271 VYGIGRKKESTAIVYLVPFSEATSSITCEVNGHKAEHYFQQNFTYLNQITLPLKKVKLEKKYKIIANVKGGGLTGQADSIKLAIARALCKVDKVNFRPILKFEGFLKRDARIKERRKYGLKKARKASQYSKR 666
            +YGIGRKKESTAIVYLVPFSE++S IT EVNG K E YFQQNFTYLNQI+LPLKK  LEKKYKIIANVKGGGLTGQADSIKL IARALCK++K++FRP LKFEGFLKRDARIKERRKYGLKKARKASQYSKR
Sbjct:   11 IYGIGRKKESTAIVYLVPFSESSSEITFEVNGCKGEQYFQQNFTYLNQISLPLKKFNLEKKYKIIANVKGGGLTGQADSIKLGIARALCKINKLSFRPTLKFEGFLKRDARIKERRKYGLKKARKASQYSKR 142
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BLAST of mRNA_P-fluviatile_contig89.14969.1 vs. uniprot
Match: A0A141BSL8_9PHAE (30S ribosomal protein S9, chloroplastic n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSL8_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 1.400e-69
Identity = 110/134 (82.09%), Postives = 123/134 (91.79%), Query Frame = 1 
Query:  265 INVYGIGRKKESTAIVYLVPFSEATSSITCEVNGHKAEHYFQQNFTYLNQITLPLKKVKLEKKYKIIANVKGGGLTGQADSIKLAIARALCKVDKVNFRPILKFEGFLKRDARIKERRKYGLKKARKASQYSKR 666
            I++YGIGR+KES AIVYLVPF E+ S I CEVNG+KAE YFQQNFTYL +I+LPLK VKLEKKYKIIANVKGGGLTGQADSI+L + RALCK++++NFRPILKF GFLKRDARIKERRKYGLKKARKASQYSKR
Sbjct:    9 IHIYGIGRRKESIAIVYLVPFLESASEILCEVNGYKAEQYFQQNFTYLKKISLPLKIVKLEKKYKIIANVKGGGLTGQADSIQLGVTRALCKLNELNFRPILKFNGFLKRDARIKERRKYGLKKARKASQYSKR 142
[Close]
BLAST of mRNA_P-fluviatile_contig89.14969.1 vs. uniprot
Match: A0A8F0JY36_9PHAE (Ribosomal protein S9 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JY36_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 6.130e-66
Identity = 110/132 (83.33%), Postives = 117/132 (88.64%), Query Frame = 1 
Query:  271 VYGIGRKKESTAIVYLVPFSEATSSITCEVNGHKAEHYFQQNFTYLNQITLPLKKVKLEKKYKIIANVKGGGLTGQADSIKLAIARALCKVDKVNFRPILKFEGFLKRDARIKERRKYGLKKARKASQYSKR 666
            VYGIGRKKESTAIVYLVP SE+ SS+T E+NG  AE YFQQN TYLN I+LPLKKV LE  YKIIANVKGGGLTGQADSIKL IARALCK+ K++FRP LKFEGFL RDARIKERRKYGLKKARKASQYSKR
Sbjct:   11 VYGIGRKKESTAIVYLVPLSESGSSMTFEINGCLAEKYFQQNVTYLNDISLPLKKVNLETHYKIIANVKGGGLTGQADSIKLGIARALCKIKKMSFRPALKFEGFLTRDARIKERRKYGLKKARKASQYSKR 142
[Close]
BLAST of mRNA_P-fluviatile_contig89.14969.1 vs. uniprot
Match: A0A8E5XRM8_9PHAE (30S ribosomal protein S9, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRM8_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 1.630e-58
Identity = 96/133 (72.18%), Postives = 109/133 (81.95%), Query Frame = 1 
Query:  268 NVYGIGRKKESTAIVYLVPFSEATSSITCEVNGHKAEHYFQQNFTYLNQITLPLKKVKLEKKYKIIANVKGGGLTGQADSIKLAIARALCKVDKVNFRPILKFEGFLKRDARIKERRKYGLKKARKASQYSKR 666
            ++YGIGR+KE+TAIVYL+P +E+ S I  EVNG   E YFQQNF YLNQI LP K +    KYKI   VKGGGLTGQA+SIKL IARALCK+D++NFRP LK +G LKRDARIKERRKYGLKKARKASQYSKR
Sbjct:   10 HIYGIGRRKEATAIVYLIPITESNSKILFEVNGRLGEQYFQQNFFYLNQIYLPFKVITSNIKYKICVTVKGGGLTGQAESIKLGIARALCKIDRINFRPTLKLQGLLKRDARIKERRKYGLKKARKASQYSKR 142
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig89.14969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A344PF45_9PHAE2.840e-8193.2330S ribosomal protein S9 n=2 Tax=Ectocarpales TaxI... [more]
A0A0R6M0L6_UNDPI3.810e-7991.7330S ribosomal protein S9, chloroplastic n=30 Tax=P... [more]
D1J729_ECTSI2.190e-7891.7330S ribosomal protein S9, chloroplastic n=2 Tax=Ec... [more]
A0A8F0F9Q4_9PHAE2.070e-7692.42Ribosomal protein S9 n=1 Tax=Chorda asiatica TaxID... [more]
A0A1I9LVW1_9PHAE1.680e-7588.6430S ribosomal protein S9, chloroplastic n=1 Tax=Pl... [more]
D1GJQ9_FUCVE7.420e-7283.4630S ribosomal protein S9, chloroplastic n=3 Tax=Fu... [more]
A0A8F0FB61_9PHAE7.420e-7287.12Ribosomal protein S9 n=1 Tax=Desmarestia aculeata ... [more]
A0A141BSL8_9PHAE1.400e-6982.0930S ribosomal protein S9, chloroplastic n=13 Tax=S... [more]
A0A8F0JY36_9PHAE6.130e-6683.33Ribosomal protein S9 n=1 Tax=Protohalopteris sp. T... [more]
A0A8E5XRM8_9PHAE1.630e-5872.1830S ribosomal protein S9, chloroplastic n=1 Tax=Is... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig89contigP-fluviatile_contig89:56396..57196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue8e-09
Seed eggNOG ortholog2880.D1J730
Preferred namerpl13
KEGG rclassRC02795
KEGG koko:K02871,ko:K03504
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03010,ko03030,ko03410,ko03420,ko03430,ko03440,ko05166,map00230,map00240,map01100,map03010,map03030,map03410,map03420,map03430,map03440,map05166
KEGG ModuleM00178,M00179,M00262
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0010467,GO:0015934,GO:0019538,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0042221,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0070013,GO:0071704,GO:0097159,GO:0098798,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0102@1,KOG3203@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01009,ko03011,ko03032,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size777
Cds size111
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig89.14969.1prot_P-fluviatile_contig89.14969.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig89 56540..56650 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817299.921358-UTR-P-fluviatile_contig89:56395..565391622817299.921358-UTR-P-fluviatile_contig89:56395..56539Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 56396..56539 +
1693571985.2260816-UTR-P-fluviatile_contig89:56395..565391693571985.2260816-UTR-P-fluviatile_contig89:56395..56539Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 56396..56539 +
1622817299.944954-UTR-P-fluviatile_contig89:56650..566611622817299.944954-UTR-P-fluviatile_contig89:56650..56661Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 56651..56661 +
1693571985.252715-UTR-P-fluviatile_contig89:56650..566611693571985.252715-UTR-P-fluviatile_contig89:56650..56661Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 56651..56661 +
1622817299.9550562-UTR-P-fluviatile_contig89:56685..571961622817299.9550562-UTR-P-fluviatile_contig89:56685..57196Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 56686..57196 +
1693571985.2666953-UTR-P-fluviatile_contig89:56685..571961693571985.2666953-UTR-P-fluviatile_contig89:56685..57196Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 56686..57196 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817299.9339592-CDS-P-fluviatile_contig89:56539..566501622817299.9339592-CDS-P-fluviatile_contig89:56539..56650Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 56540..56650 +
1693571985.2417789-CDS-P-fluviatile_contig89:56539..566501693571985.2417789-CDS-P-fluviatile_contig89:56539..56650Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 56540..56650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig89.14969.1

>prot_P-fluviatile_contig89.14969.1 ID=prot_P-fluviatile_contig89.14969.1|Name=mRNA_P-fluviatile_contig89.14969.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=37bp
MLPKNRLGRKIFMKLKVYKGEEHPHMSQNLKKIELK*
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mRNA from alignment at P-fluviatile_contig89:56396..57196+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig89.14969.1 ID=mRNA_P-fluviatile_contig89.14969.1|Name=mRNA_P-fluviatile_contig89.14969.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=801bp|location=Sequence derived from alignment at P-fluviatile_contig89:56396..57196+ (Porterinema fluviatile SAG_2381)
AATAAAATAAATGTAAGCGGAAAAAAAAACCGTCAAAAAGTATATTTTCG
TCATTCTGGGAGACCTGGGGGAAAAACAGTTGAAAATTTTGAAGAATTAC
AATTACGTCTTCCAGAACGTATTTTTGAAAAAGCTATTAAAGGAATGCTC
CCTAAAAATCGGTTAGGTCGAAAAATCTTTATGAAGTTGAAAGTATACAA
AGGTGAAGAACACCCACATATGTCTCAAAACCTTAAAAAAATAGAATTAA
AATAATTAAAGTTTATGAACAATAAAAACCAAAAAATTCCTAATGTTTAT
GGCATTGGTAGAAAAAAAGAATCTACAGCAATTGTTTATCTAGTACCCTT
TTCAGAAGCAACGTCTTCCATAACATGTGAGGTGAATGGGCATAAAGCAG
AACATTATTTTCAACAAAATTTTACTTATTTAAACCAAATAACTTTGCCT
TTAAAGAAGGTAAAGTTAGAAAAAAAATATAAGATTATCGCTAATGTTAA
AGGTGGTGGTTTAACTGGTCAAGCAGATTCCATAAAATTAGCAATTGCTA
GAGCTCTTTGTAAGGTAGATAAAGTAAATTTCCGACCTATCTTAAAATTT
GAAGGTTTTTTAAAACGCGACGCAAGAATTAAAGAGCGTCGTAAATACGG
TTTAAAGAAAGCTCGAAAAGCTTCTCAATATTCAAAACGATAATTAAGAG
CTCATTTTTTAATAATATAAATAAACATTATTTCTATCTTATATGCCAAA
AGAAAAAATACACCCAAAATGGTTTGATGAAACAAAAGTTTTTTATGATG
G
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Coding sequence (CDS) from alignment at P-fluviatile_contig89:56396..57196+

>mRNA_P-fluviatile_contig89.14969.1 ID=mRNA_P-fluviatile_contig89.14969.1|Name=mRNA_P-fluviatile_contig89.14969.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=222bp|location=Sequence derived from alignment at P-fluviatile_contig89:56396..57196+ (Porterinema fluviatile SAG_2381)
ATGCTCCCTAAAAATCGGTTAGGTCGAAAAATCTTTATGAAGTTGAAAGT
ATACAAAGGTGAAGAACACCCACATATGTCTCAAAACCTTAAAAAAATAG
AATTAAAATAAATGCTCCCTAAAAATCGGTTAGGTCGAAAAATCTTTATG
AAGTTGAAAGTATACAAAGGTGAAGAACACCCACATATGTCTCAAAACCT
TAAAAAAATAGAATTAAAATAA
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