mRNA_P-fluviatile_contig89.14968.1 (mRNA) Porterinema fluviatile SAG_2381
|
Overview
Homology
BLAST of mRNA_P-fluviatile_contig89.14968.1 vs. uniprot
Match: D1J733_ECTSI (30S ribosomal protein S13, chloroplastic n=6 Tax=Ectocarpales TaxID=2877 RepID=D1J733_ECTSI) HSP 1 Score: 231 bits (588), Expect = 4.860e-75 Identity = 120/126 (95.24%), Postives = 125/126 (99.21%), Query Frame = 1
Query: 40 MVRFLGRDLSNNKKIKYALTAIYGIGLSRAKEILDKAGLENVDEEGVRTKDLSDEDISNIRQVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAGKTK 417
MVRFLGRDL+NNKKIKYALTAIYGIGLSRAKEIL+KAGLENVD+EGVRTKDLSDEDISN+R+VLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAGK K
Sbjct: 1 MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILEKAGLENVDKEGVRTKDLSDEDISNLRKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAGKNK 126
BLAST of mRNA_P-fluviatile_contig89.14968.1 vs. uniprot
Match: A0A6B7EUU3_9PHAE (30S ribosomal protein S13 n=3 Tax=Phaeophyceae TaxID=2870 RepID=A0A6B7EUU3_9PHAE) HSP 1 Score: 226 bits (576), Expect = 3.260e-73 Identity = 117/126 (92.86%), Postives = 123/126 (97.62%), Query Frame = 1
Query: 40 MVRFLGRDLSNNKKIKYALTAIYGIGLSRAKEILDKAGLENVDEEGVRTKDLSDEDISNIRQVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAGKTK 417
MVRFLGRDL+NNK+IKYALT+IYGIGLSRAKEILDKAGLENVD EG+RTKDLSDE+ISNIR+VLE DYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAGK K
Sbjct: 1 MVRFLGRDLANNKRIKYALTSIYGIGLSRAKEILDKAGLENVDREGIRTKDLSDEEISNIRKVLETDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAGKNK 126
BLAST of mRNA_P-fluviatile_contig89.14968.1 vs. uniprot
Match: A0A1I9LVX4_9PHAE (30S ribosomal protein S13, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVX4_9PHAE) HSP 1 Score: 211 bits (538), Expect = 1.970e-67 Identity = 111/126 (88.10%), Postives = 119/126 (94.44%), Query Frame = 1
Query: 40 MVRFLGRDLSNNKKIKYALTAIYGIGLSRAKEILDKAGLENVDEEGVRTKDLSDEDISNIRQVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAGKTK 417
MVRFLGRDL+NNKKIKYALTAIYGIGLSRA EILDKAGLE++D+E +RTKDLS E+ISNIR+VLEKDYQLE+DLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRG KK V GK K
Sbjct: 1 MVRFLGRDLANNKKIKYALTAIYGIGLSRATEILDKAGLESLDQERIRTKDLSGENISNIRKVLEKDYQLESDLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGVKKIVVGKNK 126
BLAST of mRNA_P-fluviatile_contig89.14968.1 vs. uniprot
Match: A0A0R6LUW3_UNDPI (30S ribosomal protein S13, chloroplastic n=26 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUW3_UNDPI) HSP 1 Score: 210 bits (535), Expect = 5.620e-67 Identity = 110/126 (87.30%), Postives = 118/126 (93.65%), Query Frame = 1
Query: 40 MVRFLGRDLSNNKKIKYALTAIYGIGLSRAKEILDKAGLENVDEEGVRTKDLSDEDISNIRQVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAGKTK 417
MVRFLG DL+NNKKIKYALT IYGIGLSRA+EILD AGL+ D+ GVRTKDLSDEDISN+R+VLEK+YQLEADL+RLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTN RTRRGGKKTVAGK K
Sbjct: 1 MVRFLGIDLANNKKIKYALTGIYGIGLSRAEEILDSAGLKAADDAGVRTKDLSDEDISNLRKVLEKNYQLEADLFRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNARTRRGGKKTVAGKNK 126
BLAST of mRNA_P-fluviatile_contig89.14968.1 vs. uniprot
Match: A0A2R4QQ15_9PHAE (30S ribosomal protein S13 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ15_9PHAE) HSP 1 Score: 205 bits (521), Expect = 7.560e-65 Identity = 106/126 (84.13%), Postives = 115/126 (91.27%), Query Frame = 1
Query: 40 MVRFLGRDLSNNKKIKYALTAIYGIGLSRAKEILDKAGLENVDEEGVRTKDLSDEDISNIRQVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAGKTK 417
MVRFLGRDL+NNKKIKYALT IYGIGLSRAKEIL+ AGL N+D+ G R KDLSDE+ISN+R+VLEK+YQLE DL R+TNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTN RTRRG KKTVAGK K
Sbjct: 1 MVRFLGRDLTNNKKIKYALTTIYGIGLSRAKEILESAGLTNIDQMGTRVKDLSDEEISNLRKVLEKNYQLEGDLVRITNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNARTRRGSKKTVAGKKK 126
BLAST of mRNA_P-fluviatile_contig89.14968.1 vs. uniprot
Match: A0A8F0FB58_9PHAE (Ribosomal protein S13 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB58_9PHAE) HSP 1 Score: 204 bits (519), Expect = 1.520e-64 Identity = 108/126 (85.71%), Postives = 113/126 (89.68%), Query Frame = 1
Query: 40 MVRFLGRDLSNNKKIKYALTAIYGIGLSRAKEILDKAGLENVDEEGVRTKDLSDEDISNIRQVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAGKTK 417
MVRFLG DL NNKKI+YALTAIYGIGLSRAKEILD AGLEN DE G+RTKDLSDE+ISNIR++LEKDYQLE DL RLTNLNIKRLMENGSIKGRRHR GLPVRGQRTRTN RTRRG KK V GK K
Sbjct: 1 MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDSAGLENADELGLRTKDLSDENISNIRKILEKDYQLEGDLVRLTNLNIKRLMENGSIKGRRHRVGLPVRGQRTRTNARTRRGAKKAVVGKKK 126
BLAST of mRNA_P-fluviatile_contig89.14968.1 vs. uniprot
Match: A0A141BSM2_9PHAE (30S ribosomal protein S13, chloroplastic n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSM2_9PHAE) HSP 1 Score: 202 bits (515), Expect = 6.180e-64 Identity = 103/126 (81.75%), Postives = 117/126 (92.86%), Query Frame = 1
Query: 40 MVRFLGRDLSNNKKIKYALTAIYGIGLSRAKEILDKAGLENVDEEGVRTKDLSDEDISNIRQVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAGKTK 417
MVR LGRDL+NNKKIKYALT IYGIGLSR+KEIL+ AGL+N +++G+R KDLSDE+IS++R++LEK+YQLE DL RLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTN RTRRGGKKTVAGK K
Sbjct: 1 MVRLLGRDLANNKKIKYALTTIYGIGLSRSKEILESAGLDNAEKKGIRVKDLSDEEISSLRKILEKNYQLEGDLLRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNARTRRGGKKTVAGKKK 126
BLAST of mRNA_P-fluviatile_contig89.14968.1 vs. uniprot
Match: A0A8F0JX21_9PHAE (Ribosomal protein S13 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JX21_9PHAE) HSP 1 Score: 190 bits (482), Expect = 6.390e-59 Identity = 100/126 (79.37%), Postives = 110/126 (87.30%), Query Frame = 1
Query: 40 MVRFLGRDLSNNKKIKYALTAIYGIGLSRAKEILDKAGLENVDEEGVRTKDLSDEDISNIRQVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAGKTK 417
MVR LGRDL N+KKIKYALTAIYGIGLSRAK+IL AGL N+DE G+RTKDLSDEDISN+R+VLEK +LE DL R L+IKRLMENGSIKGRRHR GLPVRGQRTRTN RT+RGGKKT+AGK K
Sbjct: 1 MVRLLGRDLPNDKKIKYALTAIYGIGLSRAKDILKSAGLNNLDEMGIRTKDLSDEDISNLRKVLEKQDRLEGDLLRYGQLSIKRLMENGSIKGRRHRVGLPVRGQRTRTNARTKRGGKKTIAGKKK 126
BLAST of mRNA_P-fluviatile_contig89.14968.1 vs. uniprot
Match: A0A7S6U9Z0_9STRA (30S ribosomal protein S13, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9Z0_9STRA) HSP 1 Score: 182 bits (462), Expect = 6.970e-56 Identity = 96/126 (76.19%), Postives = 111/126 (88.10%), Query Frame = 1
Query: 40 MVRFLGRDLSNNKKIKYALTAIYGIGLSRAKEILDKAGLENVDEEGVRTKDLSDEDISNIRQVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAGKTK 417
MVRF+G DL NKK+KYALTAIYGIGLSRA+ IL KAGL NV+E+G+RT+DLSD++IS++R+VLE ++QLE DL RLTNLNIKRLME SI+GRRHR GLPVRGQRTRTN RTRRG KKTVAGK K
Sbjct: 1 MVRFVGVDLPRNKKVKYALTAIYGIGLSRAEYILKKAGLINVEEKGLRTEDLSDQEISSLRKVLESEFQLEGDLRRLTNLNIKRLMEISSIRGRRHRVGLPVRGQRTRTNARTRRGSKKTVAGKKK 126
BLAST of mRNA_P-fluviatile_contig89.14968.1 vs. uniprot
Match: A0A8E6D5X0_9PHAE (30S ribosomal protein S13, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D5X0_9PHAE) HSP 1 Score: 174 bits (441), Expect = 1.070e-52 Identity = 91/126 (72.22%), Postives = 108/126 (85.71%), Query Frame = 1
Query: 40 MVRFLGRDLSNNKKIKYALTAIYGIGLSRAKEILDKAGLENVDEEGVRTKDLSDEDISNIRQVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAGKTK 417
MVR LGRDL NNKKI+YALT IYGIGLSR++EIL+KAGL+++ + TKDLSDE+IS +R+VLEKDY+LE +L RL +LNIK L +NG I+GRRHRAGLPVRGQRTRTN RTR+G KKTVAGK K
Sbjct: 1 MVRLLGRDLPNNKKIQYALTRIYGIGLSRSREILNKAGLKDLSIQNKMTKDLSDEEISTLRRVLEKDYRLEGELLRLNDLNIKHLKDNGCIRGRRHRAGLPVRGQRTRTNARTRKGTKKTVAGKKK 126 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig89.14968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig89.14968.1 >prot_P-fluviatile_contig89.14968.1 ID=prot_P-fluviatile_contig89.14968.1|Name=mRNA_P-fluviatile_contig89.14968.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=127bp MVRFLGRDLSNNKKIKYALTAIYGIGLSRAKEILDKAGLENVDEEGVRTKback to top mRNA from alignment at P-fluviatile_contig89:54068..54690+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig89.14968.1 ID=mRNA_P-fluviatile_contig89.14968.1|Name=mRNA_P-fluviatile_contig89.14968.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=623bp|location=Sequence derived from alignment at P-fluviatile_contig89:54068..54690+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig89:54068..54690+ >mRNA_P-fluviatile_contig89.14968.1 ID=mRNA_P-fluviatile_contig89.14968.1|Name=mRNA_P-fluviatile_contig89.14968.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=762bp|location=Sequence derived from alignment at P-fluviatile_contig89:54068..54690+ (Porterinema fluviatile SAG_2381)back to top |