mRNA_P-fluviatile_contig89.14959.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig89.14959.1
Unique NamemRNA_P-fluviatile_contig89.14959.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig89.14959.1 vs. uniprot
Match: A0A1I9LVJ3_9PHAE (50S ribosomal protein L21, chloroplastic n=10 Tax=Ectocarpales TaxID=2877 RepID=A0A1I9LVJ3_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 2.000e-63
Identity = 97/103 (94.17%), Postives = 102/103 (99.03%), Query Frame = 1
Query:   76 MEYAIIEASGRQFWVEPKKFIEFNRLILKVGSTILIRRILFAKNKRTTHIGQPYLQNIIVKGKVSKHFLGPKIIVFKMKPKKKYRKKIGHRQKMTRLLIHKIE 384
            MEYAIIEASGRQFWVEPKKFIEFNRLILK+GSTILIRRILFAKNK TTHIGQPYL+NI+VKGK+SKHFLGPKI+VFKMKPKKKYRKKIGHRQKMTRLLIHKIE
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNRLILKIGSTILIRRILFAKNKTTTHIGQPYLKNILVKGKISKHFLGPKILVFKMKPKKKYRKKIGHRQKMTRLLIHKIE 103          
BLAST of mRNA_P-fluviatile_contig89.14959.1 vs. uniprot
Match: A0A0R6M4T4_UNDPI (50S ribosomal protein L21, chloroplastic n=25 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M4T4_UNDPI)

HSP 1 Score: 181 bits (460), Expect = 3.550e-57
Identity = 89/103 (86.41%), Postives = 97/103 (94.17%), Query Frame = 1
Query:   76 MEYAIIEASGRQFWVEPKKFIEFNRLILKVGSTILIRRILFAKNKRTTHIGQPYLQNIIVKGKVSKHFLGPKIIVFKMKPKKKYRKKIGHRQKMTRLLIHKIE 384
            MEYAIIEASGRQFWVEPKKFIEFNRLILK+GSTILIRR+LF K K+ T IGQPYL N++VKG VSKHFLGPKI+VFKMKPKKKYRKKIGHRQK+TRLLI+KIE
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNRLILKIGSTILIRRVLFVKQKKNTLIGQPYLNNVVVKGVVSKHFLGPKILVFKMKPKKKYRKKIGHRQKLTRLLINKIE 103          
BLAST of mRNA_P-fluviatile_contig89.14959.1 vs. uniprot
Match: A0A8F0JZ48_9PHAE (Ribosomal protein L21 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZ48_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 1.140e-53
Identity = 84/102 (82.35%), Postives = 95/102 (93.14%), Query Frame = 1
Query:   76 MEYAIIEASGRQFWVEPKKFIEFNRLILKVGSTILIRRILFAKNKRTTHIGQPYLQNIIVKGKVSKHFLGPKIIVFKMKPKKKYRKKIGHRQKMTRLLIHKI 381
            MEYAIIEASGRQFWVEPKKFIEFNRLILK+GST+LIRR+LF K +  T IG+PYL+ I++KG +SKHFLGPKIIVFKMKPKKKYRKKIGHRQK+TRLLI+KI
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNRLILKIGSTVLIRRVLFVKKEANTLIGRPYLEGIVLKGIISKHFLGPKIIVFKMKPKKKYRKKIGHRQKLTRLLINKI 102          
BLAST of mRNA_P-fluviatile_contig89.14959.1 vs. uniprot
Match: A0A8F0F7S8_9PHAE (Ribosomal protein L21 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7S8_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 3.260e-53
Identity = 82/102 (80.39%), Postives = 95/102 (93.14%), Query Frame = 1
Query:   76 MEYAIIEASGRQFWVEPKKFIEFNRLILKVGSTILIRRILFAKNKRTTHIGQPYLQNIIVKGKVSKHFLGPKIIVFKMKPKKKYRKKIGHRQKMTRLLIHKI 381
            MEYAIIEASGRQFWVEPKKFIEFN LI+K+GSTILIRR+LF KN+  T IGQPYL +++VKG +SKHFLGPK++VFKMKPKKKYRKKIGHRQK+TRLLI++I
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNXLIIKIGSTILIRRVLFFKNETNTFIGQPYLNDVVVKGIISKHFLGPKVLVFKMKPKKKYRKKIGHRQKLTRLLINQI 102          
BLAST of mRNA_P-fluviatile_contig89.14959.1 vs. uniprot
Match: A0A2R4QQ35_9PHAE (50S ribosomal protein L21 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ35_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 7.220e-53
Identity = 83/103 (80.58%), Postives = 95/103 (92.23%), Query Frame = 1
Query:   76 MEYAIIEASGRQFWVEPKKFIEFNRLILKVGSTILIRRILFAKNKRTTHIGQPYLQNIIVKGKVSKHFLGPKIIVFKMKPKKKYRKKIGHRQKMTRLLIHKIE 384
            MEYAIIEASGRQFWVEPKKFIEFNRL LKVGSTI+I+R+LF K K  T IGQPYL+NI++ G +SKHFLGPK++VFKMKPKKKYRKKIGHRQK+TRLLI++IE
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNRLPLKVGSTIIIKRVLFVKKKADTFIGQPYLKNILLTGIISKHFLGPKVLVFKMKPKKKYRKKIGHRQKLTRLLINQIE 103          
BLAST of mRNA_P-fluviatile_contig89.14959.1 vs. uniprot
Match: A0A141BSP2_9PHAE (50S ribosomal protein L21, chloroplastic n=14 Tax=Sargassum TaxID=3015 RepID=A0A141BSP2_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 5.500e-50
Identity = 81/103 (78.64%), Postives = 90/103 (87.38%), Query Frame = 1
Query:   76 MEYAIIEASGRQFWVEPKKFIEFNRLILKVGSTILIRRILFAKNKRTTHIGQPYLQNIIVKGKVSKHFLGPKIIVFKMKPKKKYRKKIGHRQKMTRLLIHKIE 384
            MEYAIIEASGRQFWVEP KFIE NRL L++GSTILI+RILF K K  T IGQPYL NI++KG +SKHFLG KI+VFKMKPKKKYRKK+GHRQK+TRLLI  IE
Sbjct:    1 MEYAIIEASGRQFWVEPNKFIELNRLPLRIGSTILIKRILFVKKKTNTFIGQPYLTNIVLKGIISKHFLGSKILVFKMKPKKKYRKKMGHRQKLTRLLISSIE 103          
BLAST of mRNA_P-fluviatile_contig89.14959.1 vs. uniprot
Match: A0A8F0JYD6_9PHAE (Ribosomal protein L21 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JYD6_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 2.450e-48
Identity = 74/103 (71.84%), Postives = 91/103 (88.35%), Query Frame = 1
Query:   76 MEYAIIEASGRQFWVEPKKFIEFNRLILKVGSTILIRRILFAKNKRTTHIGQPYLQNIIVKGKVSKHFLGPKIIVFKMKPKKKYRKKIGHRQKMTRLLIHKIE 384
            MEYA+IEASGRQFWVEPKKFIEFNRL++ +GST++++RILF       +IGQPYL N ++KG +SKHFLGPKI+VFKMKPKKKYR+KIGHRQK+TRL I++IE
Sbjct:    1 MEYAVIEASGRQFWVEPKKFIEFNRLLINIGSTLIMQRILFMNKTGAINIGQPYLPNTLIKGIISKHFLGPKILVFKMKPKKKYRRKIGHRQKLTRLFINQIE 103          
BLAST of mRNA_P-fluviatile_contig89.14959.1 vs. uniprot
Match: A0A1L2F1Q6_9PHAE (Ribosomal protein L21 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1Q6_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 1.750e-46
Identity = 80/103 (77.67%), Postives = 87/103 (84.47%), Query Frame = 1
Query:   76 MEYAIIEASGRQFWVEPKKFIEFNRLILKVGSTILIRRILFAKNKRTTHIGQPYLQNIIVKGKVSKHFLGPKIIVFKMKPKKKYRKKIGHRQKMTRLLIHKIE 384
            MEYAIIEASGRQFWVEP KFIE NRL L++GS ILI+RILF K K  T IGQPYL NII+KG +SKHFLGPKIIVFKMK KK   KKIGHRQK+TRLLI+ IE
Sbjct:    1 MEYAIIEASGRQFWVEPNKFIELNRLPLRIGSIILIKRILFVKKKTNTFIGQPYLTNIILKGIISKHFLGPKIIVFKMKTKKNTVKKIGHRQKLTRLLINFIE 103          
BLAST of mRNA_P-fluviatile_contig89.14959.1 vs. uniprot
Match: A0A2I4Q2A5_9PHAE (50S ribosomal protein L21, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2A5_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 2.290e-46
Identity = 77/120 (64.17%), Postives = 91/120 (75.83%), Query Frame = 1
Query:   76 MEYAIIEASGRQFWVEPKKFIEFNRLILKVGSTILIRRILFAKN------------------KRTTHIGQPYLQNIIVKGKVSKHFLGPKIIVFKMKPKKKYRKKIGHRQKMTRLLIHKI 381
            MEYAIIEASGRQFW+EPKKF+EFNRL+L +GSTI+++RILF K                   K TT +GQPY+ NI +KG +SKHFLGPKI+VFKMKPKKKYRKK GHRQK+TRL I +I
Sbjct:    1 MEYAIIEASGRQFWIEPKKFVEFNRLLLHIGSTIILKRILFVKKTIVKDVEVPSTSLIKRIKKTTTFVGQPYITNIFIKGIISKHFLGPKILVFKMKPKKKYRKKFGHRQKLTRLFISEI 120          
BLAST of mRNA_P-fluviatile_contig89.14959.1 vs. uniprot
Match: A0A8E5XRL0_9PHAE (50S ribosomal protein L21, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRL0_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 5.010e-46
Identity = 73/103 (70.87%), Postives = 90/103 (87.38%), Query Frame = 1
Query:   76 MEYAIIEASGRQFWVEPKKFIEFNRLILKVGSTILIRRILFAKNKRTTHIGQPYLQNIIVKGKVSKHFLGPKIIVFKMKPKKKYRKKIGHRQKMTRLLIHKIE 384
            M+YAIIEASGRQFWVEP+KF+E NRL + +G+ ILI+R+LFAK    T IGQPY+ +I +KG VSKHFLGPK++VFKMKPKKKYRK+IGHRQK+TRLLI +I+
Sbjct:    1 MKYAIIEASGRQFWVEPEKFVELNRLPVNIGTKILIKRVLFAKTGEKTRIGQPYINHIEIKGVVSKHFLGPKLLVFKMKPKKKYRKRIGHRQKLTRLLISQIK 103          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig89.14959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1I9LVJ3_9PHAE2.000e-6394.1750S ribosomal protein L21, chloroplastic n=10 Tax=... [more]
A0A0R6M4T4_UNDPI3.550e-5786.4150S ribosomal protein L21, chloroplastic n=25 Tax=... [more]
A0A8F0JZ48_9PHAE1.140e-5382.35Ribosomal protein L21 n=1 Tax=Chorda asiatica TaxI... [more]
A0A8F0F7S8_9PHAE3.260e-5380.39Ribosomal protein L21 n=2 Tax=Laminariales TaxID=2... [more]
A0A2R4QQ35_9PHAE7.220e-5380.5850S ribosomal protein L21 n=3 Tax=Fucaceae TaxID=3... [more]
A0A141BSP2_9PHAE5.500e-5078.6450S ribosomal protein L21, chloroplastic n=14 Tax=... [more]
A0A8F0JYD6_9PHAE2.450e-4871.84Ribosomal protein L21 n=1 Tax=Protohalopteris sp. ... [more]
A0A1L2F1Q6_9PHAE1.750e-4677.67Ribosomal protein L21 n=1 Tax=Coccophora langsdorf... [more]
A0A2I4Q2A5_9PHAE2.290e-4664.1750S ribosomal protein L21, chloroplastic n=1 Tax=D... [more]
A0A8E5XRL0_9PHAE5.010e-4670.8750S ribosomal protein L21, chloroplastic n=1 Tax=I... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig89contigP-fluviatile_contig89:44070..44456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.4
Seed ortholog evalue2.1e-48
Seed eggNOG ortholog2880.D1J6Z3
Preferred namerpl21
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.rRNA binding
EggNOG OGs2S7IP@2759,COG0261@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size387
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817299.4375288-CDS-P-fluviatile_contig89:44069..444561622817299.4375288-CDS-P-fluviatile_contig89:44069..44456Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 44070..44456 +
1693571984.6030989-CDS-P-fluviatile_contig89:44069..444561693571984.6030989-CDS-P-fluviatile_contig89:44069..44456Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 44070..44456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig89.14959.1prot_P-fluviatile_contig89.14959.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig89 44070..44456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig89.14959.1

>prot_P-fluviatile_contig89.14959.1 ID=prot_P-fluviatile_contig89.14959.1|Name=mRNA_P-fluviatile_contig89.14959.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=129bp
NELILLVSRNLKYYYLRFYNFCSMEMEYAIIEASGRQFWVEPKKFIEFNR
LILKVGSTILIRRILFAKNKRTTHIGQPYLQNIIVKGKVSKHFLGPKIIV
FKMKPKKKYRKKIGHRQKMTRLLIHKIE*
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mRNA from alignment at P-fluviatile_contig89:44070..44456+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig89.14959.1 ID=mRNA_P-fluviatile_contig89.14959.1|Name=mRNA_P-fluviatile_contig89.14959.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=387bp|location=Sequence derived from alignment at P-fluviatile_contig89:44070..44456+ (Porterinema fluviatile SAG_2381)
AACGAATTAATTCTATTAGTATCCAGAAATTTGAAATACTATTACTTAAG GTTTTATAATTTTTGTTCAATGGAGATGGAGTATGCAATTATAGAAGCAA GTGGTCGACAGTTCTGGGTAGAGCCTAAAAAATTTATTGAATTTAATAGA TTGATCCTTAAGGTCGGGAGCACGATATTGATTCGACGAATTTTATTTGC TAAAAACAAAAGAACTACTCATATTGGTCAACCCTATTTACAAAATATTA TCGTAAAAGGAAAAGTAAGCAAACATTTTTTAGGTCCAAAAATCATTGTT TTTAAAATGAAACCAAAAAAAAAATATCGGAAAAAAATAGGACATAGACA GAAAATGACAAGATTATTGATCCATAAAATCGAATAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig89:44070..44456+

>mRNA_P-fluviatile_contig89.14959.1 ID=mRNA_P-fluviatile_contig89.14959.1|Name=mRNA_P-fluviatile_contig89.14959.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=774bp|location=Sequence derived from alignment at P-fluviatile_contig89:44070..44456+ (Porterinema fluviatile SAG_2381)
AACGAATTAATTCTATTAGTATCCAGAAATTTGAAATACTATTACTTAAG
GTTTTATAATTTTTGTTCAATGGAGATGGAGTATGCAATTATAGAAGCAA
GTGGTCGACAGTTCTGGGTAGAGCCTAAAAAATTTATTGAATTTAATAGA
TTGATCCTTAAGGTCGGGAGCACGATATTGATTCGACGAATTTTATTTGC
TAAAAACAAAAGAACTACTCATATTGGTCAACCCTATTTACAAAATATTA
TCGTAAAAGGAAAAGTAAGCAAACATTTTTTAGGTCCAAAAATCATTGTT
TTTAAAATGAAACCAAAAAAAAAATATCGGAAAAAAATAGGACATAGACA
GAAAATGACAAGATTATTGATCCATAAAATCGAATAAAACGAATTAATTC
TATTAGTATCCAGAAATTTGAAATACTATTACTTAAGGTTTTATAATTTT
TGTTCAATGGAGATGGAGTATGCAATTATAGAAGCAAGTGGTCGACAGTT
CTGGGTAGAGCCTAAAAAATTTATTGAATTTAATAGATTGATCCTTAAGG
TCGGGAGCACGATATTGATTCGACGAATTTTATTTGCTAAAAACAAAAGA
ACTACTCATATTGGTCAACCCTATTTACAAAATATTATCGTAAAAGGAAA
AGTAAGCAAACATTTTTTAGGTCCAAAAATCATTGTTTTTAAAATGAAAC
CAAAAAAAAAATATCGGAAAAAAATAGGACATAGACAGAAAATGACAAGA
TTATTGATCCATAAAATCGAATAA
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