mRNA_P-fluviatile_contig89.14956.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig89.14956.1
Unique NamemRNA_P-fluviatile_contig89.14956.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig89.14956.1 vs. uniprot
Match: A0A0R6LUT6_UNDPI (CfxQ-like protein n=37 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6LUT6_UNDPI)

HSP 1 Score: 267 bits (683), Expect = 5.870e-88
Identity = 139/148 (93.92%), Postives = 143/148 (96.62%), Query Frame = 1
Query:    1 ERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMEQFYTSNPGLSSRIANHVDFPDYSSDELLIIAKMMLEEQQYQFSPEAEPAFLEYIKTRREQPLFANARSIRNSLDRARMRQANRNFDSGGRVLTKADLVTITEADIKASSVFSL 444
            ERDYGSEAIEILLQVMENQRDDLV+IFAGYK+RMEQFY+SNPGLSSRIANHVDFPDYS DELLIIAKMMLEEQQYQFSPEAEPAFL YI  RREQPLFANARSIRNSLDRARMRQANRNFDSGGRVLTKADLVTIT+ADI ASSVFSL
Sbjct:  153 ERDYGSEAIEILLQVMENQRDDLVIIFAGYKERMEQFYSSNPGLSSRIANHVDFPDYSPDELLIIAKMMLEEQQYQFSPEAEPAFLNYILKRREQPLFANARSIRNSLDRARMRQANRNFDSGGRVLTKADLVTITDADITASSVFSL 300          
BLAST of mRNA_P-fluviatile_contig89.14956.1 vs. uniprot
Match: A0A1L2F1Z1_9PHAE (Cbbx n=16 Tax=Fucales TaxID=3009 RepID=A0A1L2F1Z1_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 1.430e-81
Identity = 129/148 (87.16%), Postives = 138/148 (93.24%), Query Frame = 1
Query:    1 ERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMEQFYTSNPGLSSRIANHVDFPDYSSDELLIIAKMMLEEQQYQFSPEAEPAFLEYIKTRREQPLFANARSIRNSLDRARMRQANRNFDSGGRVLTKADLVTITEADIKASSVFSL 444
            ERDYG+EAIEILLQVMENQRDDLV+IFAGYKDRMEQFY SNPGLSSRI+NHVDFPDYSS+ELLII+KMMLEEQQYQFSP AE  FL+YIK RREQPLFANARSIRN+LDRARMRQANRNFD+ GR+LTKADLVTI E DI  SSVFSL
Sbjct:  153 ERDYGAEAIEILLQVMENQRDDLVIIFAGYKDRMEQFYASNPGLSSRISNHVDFPDYSSEELLIISKMMLEEQQYQFSPTAEAVFLDYIKKRREQPLFANARSIRNALDRARMRQANRNFDNSGRLLTKADLVTIMEQDITKSSVFSL 300          
BLAST of mRNA_P-fluviatile_contig89.14956.1 vs. uniprot
Match: A0A8F0FC09_9PHAE (CfxQ-like protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FC09_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 2.160e-81
Identity = 127/149 (85.23%), Postives = 140/149 (93.96%), Query Frame = 1
Query:    1 ERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMEQFYTSNPGLSSRIANHVDFPDYSSDELLIIAKMMLEEQQYQFSPEAEPAFLEYIKTRREQPLFANARSIRNSLDRARMRQANRNFDSGGRVLTKADLVTITEADIKASSVFSLN 447
            ERDYG+EAIEILLQVMENQRD LVVIFAGYK+RMEQFY SNPGLSSRIANHVDFPDYSS+ELLIIAKMMLEEQQYQF+P AE  FL+YI+ RR+Q LFANARSIRN+LDRARMRQANRNF+SGGR+LTKADLVTIT+ DIK SS+FSL+
Sbjct:   79 ERDYGAEAIEILLQVMENQRDALVVIFAGYKERMEQFYASNPGLSSRIANHVDFPDYSSEELLIIAKMMLEEQQYQFAPTAEGVFLDYIEKRRDQALFANARSIRNALDRARMRQANRNFESGGRILTKADLVTITDEDIKKSSIFSLS 227          
BLAST of mRNA_P-fluviatile_contig89.14956.1 vs. uniprot
Match: A0A2I4Q2G3_9PHAE (CfxQ protein-like protein n=2 Tax=Phaeophyceae TaxID=2870 RepID=A0A2I4Q2G3_9PHAE)

HSP 1 Score: 243 bits (620), Expect = 2.000e-78
Identity = 124/147 (84.35%), Postives = 134/147 (91.16%), Query Frame = 1
Query:    1 ERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMEQFYTSNPGLSSRIANHVDFPDYSSDELLIIAKMMLEEQQYQFSPEAEPAFLEYIKTRREQPLFANARSIRNSLDRARMRQANRNFDSGGRVLTKADLVTITEADIKASSVFS 441
            ERDYG+EAIEILLQVMENQRD +VVIFAGYKDRM+QFY SNPGLSSRIANHV+FPDY+SDELLIIAKMMLEEQQYQFS  AE  F EYI  RR QPLFANARSIRN+LDRARMRQANRNFDSGGR+LTK DLVTIT+ DIK SS+F+
Sbjct:  152 ERDYGAEAIEILLQVMENQRDSIVVIFAGYKDRMDQFYASNPGLSSRIANHVNFPDYTSDELLIIAKMMLEEQQYQFSTSAEKVFFEYIAKRRTQPLFANARSIRNALDRARMRQANRNFDSGGRILTKLDLVTITDEDIKQSSIFN 298          
BLAST of mRNA_P-fluviatile_contig89.14956.1 vs. uniprot
Match: A0A8E5XRP4_9PHAE (Rubisco expression protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRP4_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 8.880e-78
Identity = 123/146 (84.25%), Postives = 135/146 (92.47%), Query Frame = 1
Query:    1 ERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMEQFYTSNPGLSSRIANHVDFPDYSSDELLIIAKMMLEEQQYQFSPEAEPAFLEYIKTRREQPLFANARSIRNSLDRARMRQANRNFDSGGRVLTKADLVTITEADIKASSVF 438
            ERDYG+EAIEILLQVMENQRD LVVI AGYKDRMEQFY SNPGLSSRIANHVDFPDYSS+ELLIIAKMMLEEQQYQF+  AE AFL+YIK RR  PLFANARS+RN+LDRARMRQANRNF++GGR+LTKADLVTIT+ DI+ SS+F
Sbjct:  154 ERDYGAEAIEILLQVMENQRDSLVVILAGYKDRMEQFYASNPGLSSRIANHVDFPDYSSEELLIIAKMMLEEQQYQFTQSAEIAFLDYIKKRRSLPLFANARSVRNALDRARMRQANRNFETGGRILTKADLVTITDEDIRQSSIF 299          
BLAST of mRNA_P-fluviatile_contig89.14956.1 vs. uniprot
Match: A0A0K1IJF1_9STRA (Putative rubisco expression protein CfxQ n=2 Tax=Xanthophyceae TaxID=2833 RepID=A0A0K1IJF1_9STRA)

HSP 1 Score: 238 bits (606), Expect = 2.740e-76
Identity = 119/148 (80.41%), Postives = 137/148 (92.57%), Query Frame = 1
Query:    1 ERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMEQFYTSNPGLSSRIANHVDFPDYSSDELLIIAKMMLEEQQYQFSPEAEPAFLEYIKTRREQPLFANARSIRNSLDRARMRQANRNFDSGGRVLTKADLVTITEADIKASSVFSL 444
            ERDYG+EAIEILLQVMENQRDDLVVI AGYKDRME+FY SNPGLSSRIANHVDFPDYS++ELL I K+MLEEQQYQF+P+AE AFL+YI+ R+EQPLFANARS++N+LDRARMRQANRNF++ G++LTKADLVTIT  DIK S VF+L
Sbjct:  152 ERDYGAEAIEILLQVMENQRDDLVVILAGYKDRMEKFYESNPGLSSRIANHVDFPDYSAEELLTIGKIMLEEQQYQFTPDAEKAFLDYIQKRKEQPLFANARSVKNALDRARMRQANRNFENAGKILTKADLVTITANDIKQSRVFTL 299          
BLAST of mRNA_P-fluviatile_contig89.14956.1 vs. uniprot
Match: B7T200_VAULI (CfxQ-like protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T200_VAULI)

HSP 1 Score: 227 bits (579), Expect = 3.380e-72
Identity = 114/148 (77.03%), Postives = 134/148 (90.54%), Query Frame = 1
Query:    1 ERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMEQFYTSNPGLSSRIANHVDFPDYSSDELLIIAKMMLEEQQYQFSPEAEPAFLEYIKTRREQPLFANARSIRNSLDRARMRQANRNFDSGGRVLTKADLVTITEADIKASSVFSL 444
            ERDYG+EAIEILLQVMENQRD+L+VI AGYKDRME+FY SNPGLSSRI+NHVDFP+Y+++ELL+I K+MLEEQQYQF PEAE AFL+YIK R+EQPLFANARS++N+LDRARMR ANR F++G R+LTKADLV IT  DIK S VF+L
Sbjct:  152 ERDYGAEAIEILLQVMENQRDNLIVILAGYKDRMEKFYESNPGLSSRISNHVDFPNYTAEELLVIGKIMLEEQQYQFVPEAEIAFLDYIKKRKEQPLFANARSVKNALDRARMRHANRIFENGNRILTKADLVNITVEDIKQSRVFTL 299          
BLAST of mRNA_P-fluviatile_contig89.14956.1 vs. uniprot
Match: A0A7S6U9U8_9STRA (CbbX n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9U8_9STRA)

HSP 1 Score: 227 bits (579), Expect = 3.480e-72
Identity = 119/149 (79.87%), Postives = 134/149 (89.93%), Query Frame = 1
Query:    1 ERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMEQFYTSNPGLSSRIANHVDFPDYSSDELLIIAKMMLEEQQYQFSPEAEPAFLEYIKTRREQPLFANARSIRNSLDRARMRQANRNFDSGGRVLTKADLVTITEADIKASSVFSLN 447
            ERDYG+EAIEILLQVMENQRD LVVI AGYKDRME+FY SNPGLSSRIANHVDFPDYSS ELL I+KMMLEEQQYQF+  AE AFL+YIK R++QPLFANARS+RN+LDRARMRQANRNF+S G VLTKADLVTI + DI  SS+F+++
Sbjct:  152 ERDYGAEAIEILLQVMENQRDALVVILAGYKDRMERFYASNPGLSSRIANHVDFPDYSSTELLTISKMMLEEQQYQFTQLAEEAFLDYIKKRQQQPLFANARSVRNALDRARMRQANRNFESPG-VLTKADLVTIKDVDITQSSIFNIS 299          
BLAST of mRNA_P-fluviatile_contig89.14956.1 vs. uniprot
Match: A0A1X9PUC4_9RHOD (CfxQ protein homolog n=2 Tax=Bangiopsis subsimplex TaxID=139980 RepID=A0A1X9PUC4_9RHOD)

HSP 1 Score: 222 bits (565), Expect = 3.950e-70
Identity = 114/146 (78.08%), Postives = 129/146 (88.36%), Query Frame = 1
Query:    1 ERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMEQFYTSNPGLSSRIANHVDFPDYSSDELLIIAKMMLEEQQYQFSPEAEPAFLEYIKTRREQPLFANARSIRNSLDRARMRQANRNFDSGGRVLTKADLVTITEADIKASSVF 438
            ERDYGSEAIEILLQVMENQRDDLVV+FAGYKDRM++FY SNPGLSSR+ANHVDFPDYS +EL+ IAK+ML+EQQY+F+ EAE A  +YIK R EQPLFANARSIRN++DRARMRQANR F SGGRVLTKADLVT+   DI  S +F
Sbjct:  149 ERDYGSEAIEILLQVMENQRDDLVVVFAGYKDRMDEFYKSNPGLSSRVANHVDFPDYSVEELVSIAKLMLQEQQYRFTSEAEGALSQYIKKRMEQPLFANARSIRNAIDRARMRQANRIFASGGRVLTKADLVTLEAEDILKSRLF 294          
BLAST of mRNA_P-fluviatile_contig89.14956.1 vs. uniprot
Match: UPI001FCCD170 (putative rubisco expression protein n=2 Tax=Rhodophyta TaxID=2763 RepID=UPI001FCCD170)

HSP 1 Score: 219 bits (558), Expect = 4.960e-69
Identity = 108/147 (73.47%), Postives = 132/147 (89.80%), Query Frame = 1
Query:    1 ERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMEQFYTSNPGLSSRIANHVDFPDYSSDELLIIAKMMLEEQQYQFSPEAEPAFLEYIKTRREQPLFANARSIRNSLDRARMRQANRNFDSGGRVLTKADLVTITEADIKASSVFS 441
            ERDYGSEAIEILLQVMENQRDDLV++FAGYK++M+ FY SNPGLSSR+ANHVDFPDYS +EL+ I+K+ML+EQQY+F+PEA+ AF +YI+ R++QPLFANARSIRN++DRARMRQANR F SG +VLTKADLVT+   DI  SS+F+
Sbjct:  151 ERDYGSEAIEILLQVMENQRDDLVIVFAGYKEKMDDFYRSNPGLSSRVANHVDFPDYSVEELISISKLMLQEQQYRFTPEADRAFYDYIERRKQQPLFANARSIRNAIDRARMRQANRIFASGSKVLTKADLVTLQAEDILQSSLFA 297          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig89.14956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0R6LUT6_UNDPI5.870e-8893.92CfxQ-like protein n=37 Tax=Phaeophyceae TaxID=2870... [more]
A0A1L2F1Z1_9PHAE1.430e-8187.16Cbbx n=16 Tax=Fucales TaxID=3009 RepID=A0A1L2F1Z1_... [more]
A0A8F0FC09_9PHAE2.160e-8185.23CfxQ-like protein n=1 Tax=Desmarestia aculeata Tax... [more]
A0A2I4Q2G3_9PHAE2.000e-7884.35CfxQ protein-like protein n=2 Tax=Phaeophyceae Tax... [more]
A0A8E5XRP4_9PHAE8.880e-7884.25Rubisco expression protein n=1 Tax=Ishige okamurae... [more]
A0A0K1IJF1_9STRA2.740e-7680.41Putative rubisco expression protein CfxQ n=2 Tax=X... [more]
B7T200_VAULI3.380e-7277.03CfxQ-like protein n=1 Tax=Vaucheria litorea TaxID=... [more]
A0A7S6U9U8_9STRA3.480e-7279.87CbbX n=1 Tax=Schizocladia ischiensis TaxID=196139 ... [more]
A0A1X9PUC4_9RHOD3.950e-7078.08CfxQ protein homolog n=2 Tax=Bangiopsis subsimplex... [more]
UPI001FCCD1704.960e-6973.47putative rubisco expression protein n=2 Tax=Rhodop... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig89contigP-fluviatile_contig89:30893..31342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score215.3
Seed ortholog evalue1.9e-53
Seed eggNOG ortholog35128.Thapsdraft1306
Preferred namecfxQ
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.ATPase family associated with various cellular activities (AAA)
EggNOG OGs2XFQN@2836,COG0464@1,KOG0730@2759
COG Functional cat.O
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size451
Cds size450
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817299.295898-CDS-P-fluviatile_contig89:30892..313421622817299.295898-CDS-P-fluviatile_contig89:30892..31342Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 30893..31342 +
1693571984.5048032-CDS-P-fluviatile_contig89:30892..313421693571984.5048032-CDS-P-fluviatile_contig89:30892..31342Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 30893..31342 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig89.14956.1prot_P-fluviatile_contig89.14956.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig89 30893..31342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig89.14956.1

>prot_P-fluviatile_contig89.14956.1 ID=prot_P-fluviatile_contig89.14956.1|Name=mRNA_P-fluviatile_contig89.14956.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=150bp
ERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMEQFYTSNPGLSSRIAN
HVDFPDYSSDELLIIAKMMLEEQQYQFSPEAEPAFLEYIKTRREQPLFAN
ARSIRNSLDRARMRQANRNFDSGGRVLTKADLVTITEADIKASSVFSLN*
back to top

mRNA from alignment at P-fluviatile_contig89:30893..31342+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig89.14956.1 ID=mRNA_P-fluviatile_contig89.14956.1|Name=mRNA_P-fluviatile_contig89.14956.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=450bp|location=Sequence derived from alignment at P-fluviatile_contig89:30893..31342+ (Porterinema fluviatile SAG_2381)
GAAAGAGATTATGGGAGTGAAGCAATTGAAATTCTTTTACAAGTTATGGA AAACCAACGTGATGATTTAGTGGTTATTTTTGCTGGTTATAAAGACCGTA TGGAACAATTCTATACTTCTAATCCAGGCTTATCTTCACGAATAGCAAAC CACGTAGATTTTCCAGACTATTCCTCGGATGAATTACTTATAATCGCAAA AATGATGCTTGAAGAGCAACAATATCAATTTTCTCCAGAAGCAGAACCAG CTTTTTTAGAATATATTAAAACACGTCGAGAACAACCATTATTTGCAAAT GCTAGAAGTATTAGAAATTCATTAGATCGAGCTAGAATGAGACAAGCAAA TCGTAATTTTGATAGTGGTGGTCGTGTGCTTACTAAAGCAGATTTAGTTA CAATTACCGAGGCAGATATCAAAGCGAGCAGCGTTTTTAGTTTAAACTGA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig89:30893..31342+

>mRNA_P-fluviatile_contig89.14956.1 ID=mRNA_P-fluviatile_contig89.14956.1|Name=mRNA_P-fluviatile_contig89.14956.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=900bp|location=Sequence derived from alignment at P-fluviatile_contig89:30893..31342+ (Porterinema fluviatile SAG_2381)
GAAAGAGATTATGGGAGTGAAGCAATTGAAATTCTTTTACAAGTTATGGA
AAACCAACGTGATGATTTAGTGGTTATTTTTGCTGGTTATAAAGACCGTA
TGGAACAATTCTATACTTCTAATCCAGGCTTATCTTCACGAATAGCAAAC
CACGTAGATTTTCCAGACTATTCCTCGGATGAATTACTTATAATCGCAAA
AATGATGCTTGAAGAGCAACAATATCAATTTTCTCCAGAAGCAGAACCAG
CTTTTTTAGAATATATTAAAACACGTCGAGAACAACCATTATTTGCAAAT
GCTAGAAGTATTAGAAATTCATTAGATCGAGCTAGAATGAGACAAGCAAA
TCGTAATTTTGATAGTGGTGGTCGTGTGCTTACTAAAGCAGATTTAGTTA
CAATTACCGAGGCAGATATCAAAGCGAGCAGCGTTTTTAGTTTAAACTGA
GAAAGAGATTATGGGAGTGAAGCAATTGAAATTCTTTTACAAGTTATGGA
AAACCAACGTGATGATTTAGTGGTTATTTTTGCTGGTTATAAAGACCGTA
TGGAACAATTCTATACTTCTAATCCAGGCTTATCTTCACGAATAGCAAAC
CACGTAGATTTTCCAGACTATTCCTCGGATGAATTACTTATAATCGCAAA
AATGATGCTTGAAGAGCAACAATATCAATTTTCTCCAGAAGCAGAACCAG
CTTTTTTAGAATATATTAAAACACGTCGAGAACAACCATTATTTGCAAAT
GCTAGAAGTATTAGAAATTCATTAGATCGAGCTAGAATGAGACAAGCAAA
TCGTAATTTTGATAGTGGTGGTCGTGTGCTTACTAAAGCAGATTTAGTTA
CAATTACCGAGGCAGATATCAAAGCGAGCAGCGTTTTTAGTTTAAACTGA
back to top