mRNA_P-fluviatile_contig89.14955.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig89.14955.1
Unique NamemRNA_P-fluviatile_contig89.14955.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig89.14955.1 vs. uniprot
Match: A0A0R6LUT6_UNDPI (CfxQ-like protein n=37 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6LUT6_UNDPI)

HSP 1 Score: 233 bits (593), Expect = 1.840e-74
Identity = 119/122 (97.54%), Postives = 121/122 (99.18%), Query Frame = 1
Query:   58 KNLENLSLEKNLNLKQVYLDTQIKTIIDILNEELVGLVPVKTRIQEISALLVIDKLRENLGFTTGNPGLHMSFTGSPGTGKTTVATRMADILFKLGHSKKGHLLTVTRDDLVGQYIGHTAPK 423
            K+LENLSLEKNLNLKQVYLDTQIKTIIDIL EELVGL+PVKTRIQEISALLVIDKLRENLGFTTGNPGLHMSFTGSPGTGKTTVATRMADILFKLGHSKKGHLLTVTRDDLVGQYIGHTAPK
Sbjct:    5 KSLENLSLEKNLNLKQVYLDTQIKTIIDILEEELVGLIPVKTRIQEISALLVIDKLRENLGFTTGNPGLHMSFTGSPGTGKTTVATRMADILFKLGHSKKGHLLTVTRDDLVGQYIGHTAPK 126          
BLAST of mRNA_P-fluviatile_contig89.14955.1 vs. uniprot
Match: A0A8E5XRP4_9PHAE (Rubisco expression protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRP4_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 3.300e-70
Identity = 112/124 (90.32%), Postives = 122/124 (98.39%), Query Frame = 1
Query:   52 LTKNLENLSLEKNLNLKQVYLDTQIKTIIDILNEELVGLVPVKTRIQEISALLVIDKLRENLGFTTGNPGLHMSFTGSPGTGKTTVATRMADILFKLGHSKKGHLLTVTRDDLVGQYIGHTAPK 423
            L  N+++LS+EK+LNLKQVYLDTQIKTIIDILN+ELVGL+PVKTRIQEI+ALLVIDKLRENLGFTTGNPGLHMSFTGSPGTGKTTVATRMADILFKLG+SKKGHLLTVTRDDLVGQ+IGHTAPK
Sbjct:    4 LKTNIQHLSVEKSLNLKQVYLDTQIKTIIDILNQELVGLLPVKTRIQEIAALLVIDKLRENLGFTTGNPGLHMSFTGSPGTGKTTVATRMADILFKLGYSKKGHLLTVTRDDLVGQFIGHTAPK 127          
BLAST of mRNA_P-fluviatile_contig89.14955.1 vs. uniprot
Match: A0A2I4Q2G3_9PHAE (CfxQ protein-like protein n=2 Tax=Phaeophyceae TaxID=2870 RepID=A0A2I4Q2G3_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 3.470e-69
Identity = 110/121 (90.91%), Postives = 117/121 (96.69%), Query Frame = 1
Query:   61 NLENLSLEKNLNLKQVYLDTQIKTIIDILNEELVGLVPVKTRIQEISALLVIDKLRENLGFTTGNPGLHMSFTGSPGTGKTTVATRMADILFKLGHSKKGHLLTVTRDDLVGQYIGHTAPK 423
            NL+ L+ EKNLNLKQVYLDT+IK IIDILNEELVGL+PVKTRIQEISALL+IDKLR+NLG TTGNPGLHMSFTGSPGTGKTTVATRM+DILFKLGHSKKGHLLTVTRDDLVGQYIGHTAPK
Sbjct:    5 NLDTLAPEKNLNLKQVYLDTEIKNIIDILNEELVGLIPVKTRIQEISALLIIDKLRKNLGLTTGNPGLHMSFTGSPGTGKTTVATRMSDILFKLGHSKKGHLLTVTRDDLVGQYIGHTAPK 125          
BLAST of mRNA_P-fluviatile_contig89.14955.1 vs. uniprot
Match: A0A1L2F1Z1_9PHAE (Cbbx n=16 Tax=Fucales TaxID=3009 RepID=A0A1L2F1Z1_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 1.750e-67
Identity = 110/122 (90.16%), Postives = 114/122 (93.44%), Query Frame = 1
Query:   58 KNLENLSLEKNLNLKQVYLDTQIKTIIDILNEELVGLVPVKTRIQEISALLVIDKLRENLGFTTGNPGLHMSFTGSPGTGKTTVATRMADILFKLGHSKKGHLLTVTRDDLVGQYIGHTAPK 423
            K LE LS +KNLNLKQVYLDTQI+ IIDILN+ELVGL PVK RIQEISALLVIDKLR+NLGFT GNPGLHMSFTGSPGTGKTTVATRM DILFKLGHSKKGHLLTVTRDDLVGQYIGHTAPK
Sbjct:    5 KKLETLSQDKNLNLKQVYLDTQIQKIIDILNQELVGLKPVKKRIQEISALLVIDKLRQNLGFTVGNPGLHMSFTGSPGTGKTTVATRMGDILFKLGHSKKGHLLTVTRDDLVGQYIGHTAPK 126          
BLAST of mRNA_P-fluviatile_contig89.14955.1 vs. uniprot
Match: A0A7S6U9U8_9STRA (CbbX n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9U8_9STRA)

HSP 1 Score: 201 bits (512), Expect = 3.350e-62
Identity = 101/122 (82.79%), Postives = 113/122 (92.62%), Query Frame = 1
Query:   58 KNLENLSLEKNLNLKQVYLDTQIKTIIDILNEELVGLVPVKTRIQEISALLVIDKLRENLGFTTGNPGLHMSFTGSPGTGKTTVATRMADILFKLGHSKKGHLLTVTRDDLVGQYIGHTAPK 423
            +N E LSLEKNLNLKQVY +TQI+ +ID+L++ELVGLVPVKTRIQEI+ALLVIDKLR+NLGF T +PGLHMSFTGSPGTGKTTVA RMADIL+KLG+  KGHLLTVTRDDLVGQYIGHTAPK
Sbjct:    4 QNFETLSLEKNLNLKQVYSNTQIQLVIDLLDQELVGLVPVKTRIQEIAALLVIDKLRDNLGFNTSSPGLHMSFTGSPGTGKTTVALRMADILYKLGYCSKGHLLTVTRDDLVGQYIGHTAPK 125          
BLAST of mRNA_P-fluviatile_contig89.14955.1 vs. uniprot
Match: A0A0K1IJF1_9STRA (Putative rubisco expression protein CfxQ n=2 Tax=Xanthophyceae TaxID=2833 RepID=A0A0K1IJF1_9STRA)

HSP 1 Score: 182 bits (461), Expect = 1.630e-54
Identity = 94/126 (74.60%), Postives = 110/126 (87.30%), Query Frame = 1
Query:   46 VGLTKNLENLSLEKNLNLKQVYLDTQIKTIIDILNEELVGLVPVKTRIQEISALLVIDKLRENLGFTTGNPGLHMSFTGSPGTGKTTVATRMADILFKLGHSKKGHLLTVTRDDLVGQYIGHTAPK 423
            + +  NLE LS  K+LNLKQ Y DTQI+ +IDIL EELVGLVPVK+RI+EI+ALLVID+LR+ +  T+ +PGLHMSFTGSPGTGKTTVA RMADIL+KLG+ +KGHLLTVTRDDLVGQYIGHTAPK
Sbjct:    1 MSIPGNLE-LSTTKSLNLKQEYKDTQIQRVIDILEEELVGLVPVKSRIREIAALLVIDRLRKKVNLTSNSPGLHMSFTGSPGTGKTTVALRMADILYKLGYCRKGHLLTVTRDDLVGQYIGHTAPK 125          
BLAST of mRNA_P-fluviatile_contig89.14955.1 vs. uniprot
Match: B7T200_VAULI (CfxQ-like protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T200_VAULI)

HSP 1 Score: 174 bits (440), Expect = 2.380e-51
Identity = 89/122 (72.95%), Postives = 109/122 (89.34%), Query Frame = 1
Query:   58 KNLENLSLEKNLNLKQVYLDTQIKTIIDILNEELVGLVPVKTRIQEISALLVIDKLRENLGFTTGNPGLHMSFTGSPGTGKTTVATRMADILFKLGHSKKGHLLTVTRDDLVGQYIGHTAPK 423
            +NLE LS  K+L+LKQ Y +T+I+ +IDIL EELVGL+PVKTRI+EI+ALL+ID+LR+ +  T+ +PGL+MSFTGSPGTGKTTVA RMADIL+KLG+ KKGH+LTVTRDDLVGQYIGHTAPK
Sbjct:    5 RNLE-LSTIKSLSLKQEYENTKIQRVIDILEEELVGLIPVKTRIREIAALLIIDRLRKKVDLTSNSPGLNMSFTGSPGTGKTTVALRMADILYKLGYCKKGHMLTVTRDDLVGQYIGHTAPK 125          
BLAST of mRNA_P-fluviatile_contig89.14955.1 vs. uniprot
Match: CFXQ_TRICV (Protein CfxQ homolog n=23 Tax=cellular organisms TaxID=131567 RepID=CFXQ_TRICV)

HSP 1 Score: 173 bits (439), Expect = 2.710e-51
Identity = 85/116 (73.28%), Postives = 105/116 (90.52%), Query Frame = 1
Query:   76 SLEKNLNLKQVYLDTQIKTIIDILNEELVGLVPVKTRIQEISALLVIDKLRENLGFTTGNPGLHMSFTGSPGTGKTTVATRMADILFKLGHSKKGHLLTVTRDDLVGQYIGHTAPK 423
            S++ ++NL++ Y  T+I  I+++LNEELVGLVPVK+RI+EI+ALL+IDKLR+NLG T G+PGLHMSFTGSPGTGKTTV  +M+DILF+LG+ KKGHLLTVTRDDLVGQYIGHTAPK
Sbjct:    3 SMDTSVNLQEEYNKTEIAKILNLLNEELVGLVPVKSRIREIAALLLIDKLRKNLGITAGSPGLHMSFTGSPGTGKTTVGLKMSDILFQLGYIKKGHLLTVTRDDLVGQYIGHTAPK 118          
BLAST of mRNA_P-fluviatile_contig89.14955.1 vs. uniprot
Match: UPI001FCD0825 (putative rubisco expression protein n=1 Tax=Pulvinaster venetus TaxID=427767 RepID=UPI001FCD0825)

HSP 1 Score: 173 bits (438), Expect = 4.520e-51
Identity = 85/120 (70.83%), Postives = 106/120 (88.33%), Query Frame = 1
Query:   64 LENLSLEKNLNLKQVYLDTQIKTIIDILNEELVGLVPVKTRIQEISALLVIDKLRENLGFTTGNPGLHMSFTGSPGTGKTTVATRMADILFKLGHSKKGHLLTVTRDDLVGQYIGHTAPK 423
            L+N S +  +NL++ Y  TQI+ ++D LNEEL+GLVPVKTRI+EI+ALL+ID+LR+++G  +G+PGLHMSFTGSPGTGKTTVA +MADIL +LG+ KKGHLLTVTRDDLVGQYIGHTAPK
Sbjct:    4 LDNFSNDTLVNLREEYYKTQIQDVLDRLNEELIGLVPVKTRIREIAALLLIDRLRKSVGLVSGSPGLHMSFTGSPGTGKTTVALKMADILHRLGYIKKGHLLTVTRDDLVGQYIGHTAPK 123          
BLAST of mRNA_P-fluviatile_contig89.14955.1 vs. uniprot
Match: UPI001FCD72B0 (putative rubisco expression protein n=1 Tax=Rhodella violacea TaxID=2801 RepID=UPI001FCD72B0)

HSP 1 Score: 171 bits (432), Expect = 2.990e-50
Identity = 83/111 (74.77%), Postives = 102/111 (91.89%), Query Frame = 1
Query:   91 LNLKQVYLDTQIKTIIDILNEELVGLVPVKTRIQEISALLVIDKLRENLGFTTGNPGLHMSFTGSPGTGKTTVATRMADILFKLGHSKKGHLLTVTRDDLVGQYIGHTAPK 423
            +NL++ Y  TQI++I+D LN++L+GLVPVKTRI+EI+ALL+ID+LR+ LG  +GNPGLHMSFTGSPGTGKTTVA +MADIL++LG+ KKGHLLTVTRDDLVGQYIGHTAPK
Sbjct:    6 INLQEEYNKTQIQSILDQLNKDLIGLVPVKTRIREIAALLLIDRLRKQLGMVSGNPGLHMSFTGSPGTGKTTVAMKMADILYRLGYIKKGHLLTVTRDDLVGQYIGHTAPK 116          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig89.14955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0R6LUT6_UNDPI1.840e-7497.54CfxQ-like protein n=37 Tax=Phaeophyceae TaxID=2870... [more]
A0A8E5XRP4_9PHAE3.300e-7090.32Rubisco expression protein n=1 Tax=Ishige okamurae... [more]
A0A2I4Q2G3_9PHAE3.470e-6990.91CfxQ protein-like protein n=2 Tax=Phaeophyceae Tax... [more]
A0A1L2F1Z1_9PHAE1.750e-6790.16Cbbx n=16 Tax=Fucales TaxID=3009 RepID=A0A1L2F1Z1_... [more]
A0A7S6U9U8_9STRA3.350e-6282.79CbbX n=1 Tax=Schizocladia ischiensis TaxID=196139 ... [more]
A0A0K1IJF1_9STRA1.630e-5474.60Putative rubisco expression protein CfxQ n=2 Tax=X... [more]
B7T200_VAULI2.380e-5172.95CfxQ-like protein n=1 Tax=Vaucheria litorea TaxID=... [more]
CFXQ_TRICV2.710e-5173.28Protein CfxQ homolog n=23 Tax=cellular organisms T... [more]
UPI001FCD08254.520e-5170.83putative rubisco expression protein n=1 Tax=Pulvin... [more]
UPI001FCD72B02.990e-5074.77putative rubisco expression protein n=1 Tax=Rhodel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig89contigP-fluviatile_contig89:30392..30814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.2
Seed ortholog evalue2e-38
Seed eggNOG ortholog159749.K0RTY6
Preferred namecfxQ
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.ATPase family associated with various cellular activities (AAA)
EggNOG OGs2XFQN@2836,COG0464@1,KOG0730@2759
COG Functional cat.O
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size423
Cds size384
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817299.2537508-UTR-P-fluviatile_contig89:30391..304301622817299.2537508-UTR-P-fluviatile_contig89:30391..30430Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 30392..30430 +
1693571984.4811387-UTR-P-fluviatile_contig89:30391..304301693571984.4811387-UTR-P-fluviatile_contig89:30391..30430Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 30392..30430 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817299.266749-CDS-P-fluviatile_contig89:30430..308141622817299.266749-CDS-P-fluviatile_contig89:30430..30814Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 30431..30814 +
1693571984.4932866-CDS-P-fluviatile_contig89:30430..308141693571984.4932866-CDS-P-fluviatile_contig89:30430..30814Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 30431..30814 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig89.14955.1prot_P-fluviatile_contig89.14955.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig89 30431..30814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig89.14955.1

>prot_P-fluviatile_contig89.14955.1 ID=prot_P-fluviatile_contig89.14955.1|Name=mRNA_P-fluviatile_contig89.14955.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=128bp
MEVGLTKNLENLSLEKNLNLKQVYLDTQIKTIIDILNEELVGLVPVKTRI
QEISALLVIDKLRENLGFTTGNPGLHMSFTGSPGTGKTTVATRMADILFK
LGHSKKGHLLTVTRDDLVGQYIGHTAPK
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mRNA from alignment at P-fluviatile_contig89:30392..30814+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig89.14955.1 ID=mRNA_P-fluviatile_contig89.14955.1|Name=mRNA_P-fluviatile_contig89.14955.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=423bp|location=Sequence derived from alignment at P-fluviatile_contig89:30392..30814+ (Porterinema fluviatile SAG_2381)
CATGGAATCAATAAATATTTTAGTAGGGGTTAAAAATATATGGAAGTAGG ACTAACAAAAAACTTAGAGAATTTATCTTTAGAAAAAAATTTAAATTTAA AACAGGTTTATTTAGACACGCAAATAAAAACAATAATCGATATACTAAAC GAGGAATTGGTAGGTTTAGTACCTGTAAAAACGAGAATTCAGGAAATTTC TGCTTTATTAGTGATAGATAAGTTAAGAGAAAATTTAGGGTTCACCACTG GAAATCCAGGTTTACATATGTCTTTTACTGGTAGTCCTGGTACTGGTAAA ACTACTGTTGCTACACGTATGGCTGATATACTTTTTAAGTTAGGGCACTC GAAAAAAGGACATCTGTTAACTGTAACCCGAGATGATTTAGTGGGTCAGT ATATTGGCCATACAGCCCCGAAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig89:30392..30814+

>mRNA_P-fluviatile_contig89.14955.1 ID=mRNA_P-fluviatile_contig89.14955.1|Name=mRNA_P-fluviatile_contig89.14955.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=768bp|location=Sequence derived from alignment at P-fluviatile_contig89:30392..30814+ (Porterinema fluviatile SAG_2381)
ATGGAAGTAGGACTAACAAAAAACTTAGAGAATTTATCTTTAGAAAAAAA
TTTAAATTTAAAACAGGTTTATTTAGACACGCAAATAAAAACAATAATCG
ATATACTAAACGAGGAATTGGTAGGTTTAGTACCTGTAAAAACGAGAATT
CAGGAAATTTCTGCTTTATTAGTGATAGATAAGTTAAGAGAAAATTTAGG
GTTCACCACTGGAAATCCAGGTTTACATATGTCTTTTACTGGTAGTCCTG
GTACTGGTAAAACTACTGTTGCTACACGTATGGCTGATATACTTTTTAAG
TTAGGGCACTCGAAAAAAGGACATCTGTTAACTGTAACCCGAGATGATTT
AGTGGGTCAGTATATTGGCCATACAGCCCCGAAGATGGAAGTAGGACTAA
CAAAAAACTTAGAGAATTTATCTTTAGAAAAAAATTTAAATTTAAAACAG
GTTTATTTAGACACGCAAATAAAAACAATAATCGATATACTAAACGAGGA
ATTGGTAGGTTTAGTACCTGTAAAAACGAGAATTCAGGAAATTTCTGCTT
TATTAGTGATAGATAAGTTAAGAGAAAATTTAGGGTTCACCACTGGAAAT
CCAGGTTTACATATGTCTTTTACTGGTAGTCCTGGTACTGGTAAAACTAC
TGTTGCTACACGTATGGCTGATATACTTTTTAAGTTAGGGCACTCGAAAA
AAGGACATCTGTTAACTGTAACCCGAGATGATTTAGTGGGTCAGTATATT
GGCCATACAGCCCCGAAG
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