mRNA_P-fluviatile_contig89.14954.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig89.14954.1
Unique NamemRNA_P-fluviatile_contig89.14954.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig89.14954.1 vs. uniprot
Match: A0A7T8G5K4_SCYLO (Photosystem II reaction center protein L n=10 Tax=Phaeophyceae TaxID=2870 RepID=A0A7T8G5K4_SCYLO)

HSP 1 Score: 106 bits (265), Expect = 9.860e-28
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 2 
Query:    2 NYINAIYSTIGGYVMTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN 157
            NYINAIYSTIGGY MTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN
Sbjct:   18 NYINAIYSTIGGYSMTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN 69
[Close]
BLAST of mRNA_P-fluviatile_contig89.14954.1 vs. uniprot
Match: D1J7D3_ECTSI (Photosystem II reaction center protein L n=43 Tax=Phaeophyceae TaxID=2870 RepID=D1J7D3_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 6.790e-18
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 2 
Query:   44 MTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN 157
            MTGPNPNKQEVEISRTSLYWGLLLFF+LAVLFSSYFFN
Sbjct:    1 MTGPNPNKQEVEISRTSLYWGLLLFFILAVLFSSYFFN 38
[Close]
BLAST of mRNA_P-fluviatile_contig89.14954.1 vs. uniprot
Match: A0A1I9LW22_9PHAE (Photosystem II reaction center protein L n=3 Tax=Phaeophyceae TaxID=2870 RepID=A0A1I9LW22_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 9.610e-18
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 2 
Query:   44 MTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN 157
            MTGPNPNKQEVE+SRTSLYWGLLLFF+LAVLFSSYFFN
Sbjct:    1 MTGPNPNKQEVEVSRTSLYWGLLLFFILAVLFSSYFFN 38
[Close]
BLAST of mRNA_P-fluviatile_contig89.14954.1 vs. uniprot
Match: A0A1L1YA62_9FLOR (Photosystem II reaction center protein L n=6 Tax=Florideophyceae TaxID=2806 RepID=A0A1L1YA62_9FLOR)

HSP 1 Score: 79.7 bits (195), Expect = 4.060e-17
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 2 
Query:    5 YINAIYSTIG-GYVMTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN 157
            YI AIYS IG  ++M+GPNPNK+ VE++RTSL+WGLLL  VLAVLFSSYFFN
Sbjct:   19 YIYAIYSKIGDNFIMSGPNPNKEPVELNRTSLFWGLLLILVLAVLFSSYFFN 70
[Close]
BLAST of mRNA_P-fluviatile_contig89.14954.1 vs. uniprot
Match: D1J7D2_ECTSI (Photosystem II reaction center protein J n=52 Tax=Phaeophyceae TaxID=2870 RepID=D1J7D2_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 5.580e-17
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:  253 MAGTGRVPLWLVALAGGLGVIVVVGTFIFGSYSGLGSSL 369
            MAGTGRVPLWLVALAGGLGVIVVVGTFIFGSYSGLGSSL
Sbjct:    1 MAGTGRVPLWLVALAGGLGVIVVVGTFIFGSYSGLGSSL 39
[Close]
BLAST of mRNA_P-fluviatile_contig89.14954.1 vs. uniprot
Match: A0A8K1YUB7_9FLOR (Photosystem II protein L n=2 Tax=Kumanoa TaxID=644269 RepID=A0A8K1YUB7_9FLOR)

HSP 1 Score: 78.2 bits (191), Expect = 1.630e-16
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 2 
Query:    5 YINAIYSTIG-GYVMTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN 157
            YI AIY+ +G  Y M+GPNPNK  VE++RTSL+WGLLL FVLAVLFSSYFFN
Sbjct:   19 YIYAIYTKVGENYNMSGPNPNKVPVELNRTSLFWGLLLIFVLAVLFSSYFFN 70
[Close]
BLAST of mRNA_P-fluviatile_contig89.14954.1 vs. uniprot
Match: PSBL_PHATC (Photosystem II reaction center protein L n=87 Tax=cellular organisms TaxID=131567 RepID=PSBL_PHATC)

HSP 1 Score: 74.7 bits (182), Expect = 1.770e-15
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 2 
Query:   44 MTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN 157
            MTGPNPNKQ VE++RTSLYWGLLL FVLAVLFSSYFFN
Sbjct:    1 MTGPNPNKQAVELNRTSLYWGLLLIFVLAVLFSSYFFN 38
[Close]
BLAST of mRNA_P-fluviatile_contig89.14954.1 vs. uniprot
Match: A0A516ZAF7_9STRA (Photosystem II reaction center protein L n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZAF7_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 7.120e-15
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 2 
Query:   44 MTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN 157
            M+GPNPN+Q VE+SRTSLYWGLLL FVLAVLFSSYFFN
Sbjct:    1 MSGPNPNRQPVELSRTSLYWGLLLIFVLAVLFSSYFFN 38
[Close]
BLAST of mRNA_P-fluviatile_contig89.14954.1 vs. uniprot
Match: PSBL_PHYPA (Photosystem II reaction center protein L n=237 Tax=Embryophyta TaxID=3193 RepID=PSBL_PHYPA)

HSP 1 Score: 70.9 bits (172), Expect = 5.710e-14
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 2 
Query:   44 MTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN 157
            MT PNPNKQ VE++RTSLYWGLLL FVLAVLFS+YFFN
Sbjct:    1 MTQPNPNKQSVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
[Close]
BLAST of mRNA_P-fluviatile_contig89.14954.1 vs. uniprot
Match: A0A410YEW8_9MONI (Photosystem II reaction center protein L n=6 Tax=Trichomanoideae TaxID=1983412 RepID=A0A410YEW8_9MONI)

HSP 1 Score: 70.9 bits (172), Expect = 5.710e-14
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 2 
Query:   44 MTGPNPNKQEVEISRTSLYWGLLLFFVLAVLFSSYFFN 157
            MT PNPNKQ VE++RTSLYWGLLL FVLAVLFS+YFFN
Sbjct:    1 MTPPNPNKQSVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig89.14954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7T8G5K4_SCYLO9.860e-2898.08Photosystem II reaction center protein L n=10 Tax=... [more]
D1J7D3_ECTSI6.790e-1897.37Photosystem II reaction center protein L n=43 Tax=... [more]
A0A1I9LW22_9PHAE9.610e-1894.74Photosystem II reaction center protein L n=3 Tax=P... [more]
A0A1L1YA62_9FLOR4.060e-1773.08Photosystem II reaction center protein L n=6 Tax=F... [more]
D1J7D2_ECTSI5.580e-17100.00Photosystem II reaction center protein J n=52 Tax=... [more]
A0A8K1YUB7_9FLOR1.630e-1673.08Photosystem II protein L n=2 Tax=Kumanoa TaxID=644... [more]
PSBL_PHATC1.770e-1589.47Photosystem II reaction center protein L n=87 Tax=... [more]
A0A516ZAF7_9STRA7.120e-1586.84Photosystem II reaction center protein L n=2 Tax=D... [more]
PSBL_PHYPA5.710e-1484.21Photosystem II reaction center protein L n=237 Tax... [more]
A0A410YEW8_9MONI5.710e-1484.21Photosystem II reaction center protein L n=6 Tax=T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig89contigP-fluviatile_contig89:28981..29405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size425
Cds size120
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig89.14954.1prot_P-fluviatile_contig89.14954.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig89 29233..29352 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817299.1916158-UTR-P-fluviatile_contig89:28980..292321622817299.1916158-UTR-P-fluviatile_contig89:28980..29232Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 28981..29232 +
1693571984.4464583-UTR-P-fluviatile_contig89:28980..292321693571984.4464583-UTR-P-fluviatile_contig89:28980..29232Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 28981..29232 +
1622817299.217917-UTR-P-fluviatile_contig89:29352..294051622817299.217917-UTR-P-fluviatile_contig89:29352..29405Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 29353..29405 +
1693571984.465697-UTR-P-fluviatile_contig89:29352..294051693571984.465697-UTR-P-fluviatile_contig89:29352..29405Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 29353..29405 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817299.2046626-CDS-P-fluviatile_contig89:29232..293521622817299.2046626-CDS-P-fluviatile_contig89:29232..29352Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 29233..29352 +
1693571984.4561455-CDS-P-fluviatile_contig89:29232..293521693571984.4561455-CDS-P-fluviatile_contig89:29232..29352Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 29233..29352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig89.14954.1

>prot_P-fluviatile_contig89.14954.1 ID=prot_P-fluviatile_contig89.14954.1|Name=mRNA_P-fluviatile_contig89.14954.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=40bp
MAGTGRVPLWLVALAGGLGVIVVVGTFIFGSYSGLGSSL*
back to top

mRNA from alignment at P-fluviatile_contig89:28981..29405+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig89.14954.1 ID=mRNA_P-fluviatile_contig89.14954.1|Name=mRNA_P-fluviatile_contig89.14954.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=425bp|location=Sequence derived from alignment at P-fluviatile_contig89:28981..29405+ (Porterinema fluviatile SAG_2381)
CAATTACATCAATGCAATTTATTCAACGATAGGAGGTTACGTAATGACAG
GTCCAAATCCTAATAAGCAAGAAGTTGAAATAAGTCGTACATCTTTATAC
TGGGGTTTATTATTATTCTTTGTATTAGCTGTACTTTTCTCTAGTTATTT
CTTTAATTAATTTAGTTAAAAGAAGTTTTAATTGCTAGATAGAGTTTTTA
CTAGATAAAGTTTTTATAAAGTTAAGAAAAAATAGAGGAGCTAAAAACTA
TTATGGCAGGAACAGGAAGAGTACCACTTTGGTTAGTTGCGCTAGCCGGT
GGTTTAGGAGTTATAGTCGTTGTCGGTACTTTTATTTTTGGTTCGTATTC
TGGTCTTGGTTCTTCGCTTTAATGGTTTGATAAAAATTTAAAATATATCT
ATTGTTTATTTACATTGAAAAAGAT
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig89:28981..29405+

>mRNA_P-fluviatile_contig89.14954.1 ID=mRNA_P-fluviatile_contig89.14954.1|Name=mRNA_P-fluviatile_contig89.14954.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=240bp|location=Sequence derived from alignment at P-fluviatile_contig89:28981..29405+ (Porterinema fluviatile SAG_2381)
ATGGCAGGAACAGGAAGAGTACCACTTTGGTTAGTTGCGCTAGCCGGTGG
TTTAGGAGTTATAGTCGTTGTCGGTACTTTTATTTTTGGTTCGTATTCTG
GTCTTGGTTCTTCGCTTTAAATGGCAGGAACAGGAAGAGTACCACTTTGG
TTAGTTGCGCTAGCCGGTGGTTTAGGAGTTATAGTCGTTGTCGGTACTTT
TATTTTTGGTTCGTATTCTGGTCTTGGTTCTTCGCTTTAA
back to top