mRNA_P-fluviatile_contig89.14953.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig89.14953.1
Unique NamemRNA_P-fluviatile_contig89.14953.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig89.14953.1 vs. uniprot
Match: PSBE_PHATC (Cytochrome b559 subunit alpha n=39 Tax=cellular organisms TaxID=131567 RepID=PSBE_PHATC)

HSP 1 Score: 172 bits (435), Expect = 6.900e-53
Identity = 79/84 (94.05%), Postives = 84/84 (100.00%), Query Frame = 2 
Query:   71 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 322
            MSGGSTGERPFSDIITSVRYWIIHSITIPSLF+SGWLF+STGLAYDVFGTPRPNEYFTQDRQQ+PLVNDRFSAK+ELEDLT+GL
Sbjct:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFVSGWLFVSTGLAYDVFGTPRPNEYFTQDRQQIPLVNDRFSAKQELEDLTKGL 84
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BLAST of mRNA_P-fluviatile_contig89.14953.1 vs. uniprot
Match: PSBE_THAPS (Cytochrome b559 subunit alpha n=117 Tax=Eukaryota TaxID=2759 RepID=PSBE_THAPS)

HSP 1 Score: 171 bits (434), Expect = 9.800e-53
Identity = 80/84 (95.24%), Postives = 84/84 (100.00%), Query Frame = 2 
Query:   71 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 322
            MSGGSTGERPFSDIITSVRYWIIH+ITIPSLF+SGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAK+ELEDLT+GL
Sbjct:    1 MSGGSTGERPFSDIITSVRYWIIHTITIPSLFVSGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTKGL 84
[Close]
BLAST of mRNA_P-fluviatile_contig89.14953.1 vs. uniprot
Match: A0A6M3WCX6_COROI (Cytochrome b559 subunit alpha n=87 Tax=Florideophyceae TaxID=2806 RepID=A0A6M3WCX6_COROI)

HSP 1 Score: 169 bits (429), Expect = 1.150e-51
Identity = 76/88 (86.36%), Postives = 85/88 (96.59%), Query Frame = 2 
Query:   59 ESFKMSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 322
            E   MSGGSTGERPFSDIITS+RYW+IHSITIP+LF++GWLF+STGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAK+ELEDLT+G+
Sbjct:   20 EELIMSGGSTGERPFSDIITSIRYWVIHSITIPALFVAGWLFVSTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTKGI 107
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BLAST of mRNA_P-fluviatile_contig89.14953.1 vs. uniprot
Match: A0A3G1I9C5_9FLOR (Cytochrome b559 subunit alpha n=3 Tax=Batrachospermaceae TaxID=31371 RepID=A0A3G1I9C5_9FLOR)

HSP 1 Score: 169 bits (428), Expect = 2.160e-51
Identity = 77/85 (90.59%), Postives = 84/85 (98.82%), Query Frame = 2 
Query:   68 KMSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 322
             MSGGSTGERPFSDIITS+RYW+IHSITIPSLFI+GWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAK+ELE+LT+G+
Sbjct:   32 SMSGGSTGERPFSDIITSIRYWVIHSITIPSLFIAGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEELTKGI 116
[Close]
BLAST of mRNA_P-fluviatile_contig89.14953.1 vs. uniprot
Match: PSBE_GUITH (Cytochrome b559 subunit alpha n=32 Tax=Eukaryota TaxID=2759 RepID=PSBE_GUITH)

HSP 1 Score: 167 bits (424), Expect = 3.260e-51
Identity = 75/84 (89.29%), Postives = 84/84 (100.00%), Query Frame = 2 
Query:   71 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 322
            MSGGSTGERPFSDIITS+RYWIIHSITIP+LF++GWLF+STGLAYD+FGTPRPNEYFTQ+RQQVPLVNDRFSAK+ELEDLT+GL
Sbjct:    1 MSGGSTGERPFSDIITSIRYWIIHSITIPALFVAGWLFVSTGLAYDIFGTPRPNEYFTQERQQVPLVNDRFSAKQELEDLTKGL 84
[Close]
BLAST of mRNA_P-fluviatile_contig89.14953.1 vs. uniprot
Match: A0A6B9TNT0_SARFS (Cytochrome b559 subunit alpha n=16 Tax=Fucales TaxID=3009 RepID=A0A6B9TNT0_SARFS)

HSP 1 Score: 166 bits (421), Expect = 9.320e-51
Identity = 77/84 (91.67%), Postives = 81/84 (96.43%), Query Frame = 2 
Query:   71 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 322
            MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLF+STGLAYDVFGTPRPNEYFTQDRQQVPLVNDRF+  +E+ED TRGL
Sbjct:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFNVTQEIEDFTRGL 84
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BLAST of mRNA_P-fluviatile_contig89.14953.1 vs. uniprot
Match: PSBE_EMIHU (Cytochrome b559 subunit alpha n=17 Tax=cellular organisms TaxID=131567 RepID=PSBE_EMIHU)

HSP 1 Score: 165 bits (417), Expect = 3.780e-50
Identity = 75/84 (89.29%), Postives = 83/84 (98.81%), Query Frame = 2 
Query:   71 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 322
            MSGGSTGERPFSDIITS+RYWIIHSITIPSLF++G+LF+STGLAYD FGTPRPNEYFTQDRQQ+PLVNDRFSAK+ELEDLT+GL
Sbjct:    1 MSGGSTGERPFSDIITSIRYWIIHSITIPSLFVAGFLFVSTGLAYDAFGTPRPNEYFTQDRQQIPLVNDRFSAKQELEDLTKGL 84
[Close]
BLAST of mRNA_P-fluviatile_contig89.14953.1 vs. uniprot
Match: A0A1C9CFD7_9FLOR (Cytochrome b559 subunit alpha n=3 Tax=Hildenbrandiaceae TaxID=31478 RepID=A0A1C9CFD7_9FLOR)

HSP 1 Score: 164 bits (415), Expect = 8.090e-50
Identity = 74/84 (88.10%), Postives = 82/84 (97.62%), Query Frame = 2 
Query:   71 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 322
            MSGGSTGERPFSDIITSVRYW+IHSITIPSLFI+GWLF+STGLAYDVFGTPRP+EYFTQDRQQVPL+NDRFS K+ELEDLT+ +
Sbjct:    1 MSGGSTGERPFSDIITSVRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGTPRPDEYFTQDRQQVPLINDRFSVKQELEDLTKSI 84
[Close]
BLAST of mRNA_P-fluviatile_contig89.14953.1 vs. uniprot
Match: A0A0D3M5E1_9STRA (Cytochrome b559 subunit alpha n=6 Tax=Eukaryota TaxID=2759 RepID=A0A0D3M5E1_9STRA)

HSP 1 Score: 163 bits (413), Expect = 1.490e-49
Identity = 74/81 (91.36%), Postives = 81/81 (100.00%), Query Frame = 2 
Query:   80 GSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 322
            GSTGERPFSDIITS+RYWIIHSITIPSLF+SGWLF+STGLAYDVFGTPRPNEYF+QDRQQVPLVNDRF+AK+ELEDLT+GL
Sbjct:    3 GSTGERPFSDIITSIRYWIIHSITIPSLFVSGWLFVSTGLAYDVFGTPRPNEYFSQDRQQVPLVNDRFNAKQELEDLTKGL 83
[Close]
BLAST of mRNA_P-fluviatile_contig89.14953.1 vs. uniprot
Match: M1JFG4_DIALT (Cytochrome b559 subunit alpha n=2 Tax=Pavlovaceae TaxID=418969 RepID=M1JFG4_DIALT)

HSP 1 Score: 162 bits (410), Expect = 4.390e-49
Identity = 73/84 (86.90%), Postives = 81/84 (96.43%), Query Frame = 2 
Query:   71 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 322
            MSGGSTGERPF DIITS+RYWIIHSITIPSLF++GWLF++TGLAYD+FGTPRPNEYFT DRQQVPLVNDRFSAK+ELEDLT+ L
Sbjct:    1 MSGGSTGERPFVDIITSIRYWIIHSITIPSLFVAGWLFVATGLAYDIFGTPRPNEYFTADRQQVPLVNDRFSAKQELEDLTKSL 84
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig89.14953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PSBE_PHATC6.900e-5394.05Cytochrome b559 subunit alpha n=39 Tax=cellular or... [more]
PSBE_THAPS9.800e-5395.24Cytochrome b559 subunit alpha n=117 Tax=Eukaryota ... [more]
A0A6M3WCX6_COROI1.150e-5186.36Cytochrome b559 subunit alpha n=87 Tax=Florideophy... [more]
A0A3G1I9C5_9FLOR2.160e-5190.59Cytochrome b559 subunit alpha n=3 Tax=Batrachosper... [more]
PSBE_GUITH3.260e-5189.29Cytochrome b559 subunit alpha n=32 Tax=Eukaryota T... [more]
A0A6B9TNT0_SARFS9.320e-5191.67Cytochrome b559 subunit alpha n=16 Tax=Fucales Tax... [more]
PSBE_EMIHU3.780e-5089.29Cytochrome b559 subunit alpha n=17 Tax=cellular or... [more]
A0A1C9CFD7_9FLOR8.090e-5088.10Cytochrome b559 subunit alpha n=3 Tax=Hildenbrandi... [more]
A0A0D3M5E1_9STRA1.490e-4991.36Cytochrome b559 subunit alpha n=6 Tax=Eukaryota Ta... [more]
M1JFG4_DIALT4.390e-4986.90Cytochrome b559 subunit alpha n=2 Tax=Pavlovaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig89contigP-fluviatile_contig89:28324..28843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.4
Seed ortholog evalue5.6e-42
Seed eggNOG ortholog2880.D1J7D5
Preferred namepsbE
KEGG koko:K02707,ko:K02713
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00161
EggNOG free text desc.photosynthetic electron transport chain
EggNOG OGs2CHYC@1,2S3QA@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Hectar predicted targeting categoryother localisation
Exons1
Model size520
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig89.14953.1prot_P-fluviatile_contig89.14953.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig89 28394..28648 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817299.1355772-UTR-P-fluviatile_contig89:28323..283931622817299.1355772-UTR-P-fluviatile_contig89:28323..28393Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 28324..28393 +
1693571984.4100962-UTR-P-fluviatile_contig89:28323..283931693571984.4100962-UTR-P-fluviatile_contig89:28323..28393Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 28324..28393 +
1622817299.1575775-UTR-P-fluviatile_contig89:28648..288431622817299.1575775-UTR-P-fluviatile_contig89:28648..28843Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 28649..28843 +
1693571984.4363334-UTR-P-fluviatile_contig89:28648..288431693571984.4363334-UTR-P-fluviatile_contig89:28648..28843Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 28649..28843 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817299.146898-CDS-P-fluviatile_contig89:28393..286481622817299.146898-CDS-P-fluviatile_contig89:28393..28648Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 28394..28648 +
1693571984.4256473-CDS-P-fluviatile_contig89:28393..286481693571984.4256473-CDS-P-fluviatile_contig89:28393..28648Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 28394..28648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig89.14953.1

>prot_P-fluviatile_contig89.14953.1 ID=prot_P-fluviatile_contig89.14953.1|Name=mRNA_P-fluviatile_contig89.14953.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=85bp
MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGT
PRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL*
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mRNA from alignment at P-fluviatile_contig89:28324..28843+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig89.14953.1 ID=mRNA_P-fluviatile_contig89.14953.1|Name=mRNA_P-fluviatile_contig89.14953.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=520bp|location=Sequence derived from alignment at P-fluviatile_contig89:28324..28843+ (Porterinema fluviatile SAG_2381)
AAACAATTTTATTATACTTGTAGATTAACAAAGTTATAATATATTTTTAT
AAAATGGAGAGAGTTTTAAAATGTCTGGCGGTTCAACCGGAGAACGTCCT
TTTTCTGATATAATAACAAGTGTGCGCTATTGGATTATTCATAGTATTAC
AATTCCTTCATTATTTATTTCAGGTTGGCTATTTATTAGTACTGGTTTAG
CTTATGATGTTTTTGGGACTCCTAGACCGAATGAATATTTTACGCAAGAT
AGACAACAAGTACCATTAGTAAATGATAGATTCAGTGCAAAAGAGGAATT
AGAAGACTTAACCCGAGGCTTATAATTCTAAATTCTTTTTATTAGTGAAT
AATCACTATACTAGACAAATAGTATGTTATGAACAATTATCCACCTTAAC
GTTTTTTTAGTATTCACGTTAGAGTAGGTAATTCCTTTTAATCacaAAAA
AGTATAGAAAGAAAAGTTTTCTGTATCGTTATTCACCATCTTAAATCTAT
CACTCTTGAGAAATTATAAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig89:28324..28843+

>mRNA_P-fluviatile_contig89.14953.1 ID=mRNA_P-fluviatile_contig89.14953.1|Name=mRNA_P-fluviatile_contig89.14953.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=510bp|location=Sequence derived from alignment at P-fluviatile_contig89:28324..28843+ (Porterinema fluviatile SAG_2381)
ATGTCTGGCGGTTCAACCGGAGAACGTCCTTTTTCTGATATAATAACAAG
TGTGCGCTATTGGATTATTCATAGTATTACAATTCCTTCATTATTTATTT
CAGGTTGGCTATTTATTAGTACTGGTTTAGCTTATGATGTTTTTGGGACT
CCTAGACCGAATGAATATTTTACGCAAGATAGACAACAAGTACCATTAGT
AAATGATAGATTCAGTGCAAAAGAGGAATTAGAAGACTTAACCCGAGGCT
TATAAATGTCTGGCGGTTCAACCGGAGAACGTCCTTTTTCTGATATAATA
ACAAGTGTGCGCTATTGGATTATTCATAGTATTACAATTCCTTCATTATT
TATTTCAGGTTGGCTATTTATTAGTACTGGTTTAGCTTATGATGTTTTTG
GGACTCCTAGACCGAATGAATATTTTACGCAAGATAGACAACAAGTACCA
TTAGTAAATGATAGATTCAGTGCAAAAGAGGAATTAGAAGACTTAACCCG
AGGCTTATAA
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