mRNA_P-fluviatile_contig89.14950.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig89.14950.1
Unique NamemRNA_P-fluviatile_contig89.14950.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig89.14950.1 vs. uniprot
Match: A0A6B7ILH5_9PHAE (Photosystem I reaction center subunit III n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7ILH5_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 2.290e-69
Identity = 101/114 (88.60%), Postives = 111/114 (97.37%), Query Frame = 1 
Query:    1 ADVAGLTKCSESASFNKRLESSVKKLEGRIQKYESGSPPALALEKQIDRTKQRFDRYSNSELLCGKDGLPHLITDGRWNHAVEFMIPGMMFLYIAGWIGWVGRSYLNTITNSSS 342
            ADVAGLTKCSES +FNKRL++SVKKLEGRIQKYE+GSPPALALE+QI+RTKQRFDRYSNSELLCGKDGLPHLITDGRW+HAVEFMIPGMMFLYI GWIGWVGR+YLNTI+ SS+
Sbjct:   23 ADVAGLTKCSESTTFNKRLDASVKKLEGRIQKYEAGSPPALALEQQINRTKQRFDRYSNSELLCGKDGLPHLITDGRWDHAVEFMIPGMMFLYITGWIGWVGRNYLNTISGSSN 136
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BLAST of mRNA_P-fluviatile_contig89.14950.1 vs. uniprot
Match: A0A8F0FAP0_9PHAE (Photosystem I reaction center subunit III n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAP0_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 9.290e-69
Identity = 100/114 (87.72%), Postives = 111/114 (97.37%), Query Frame = 1 
Query:    1 ADVAGLTKCSESASFNKRLESSVKKLEGRIQKYESGSPPALALEKQIDRTKQRFDRYSNSELLCGKDGLPHLITDGRWNHAVEFMIPGMMFLYIAGWIGWVGRSYLNTITNSSS 342
            ADVAGLTKCSESA+FNKRLESSVKKLE R+QKYE+GSPPALALE+QI RTKQRFDRYSNSELLCGK+GLPHLITDGRW+HAVEFMIPGMMFLYI+GWIGWVGR YLNT++N+S+
Sbjct:   23 ADVAGLTKCSESAAFNKRLESSVKKLELRVQKYEAGSPPALALEQQISRTKQRFDRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYISGWIGWVGRKYLNTVSNTSN 136
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BLAST of mRNA_P-fluviatile_contig89.14950.1 vs. uniprot
Match: D1J7A8_ECTSI (Photosystem I reaction center subunit III n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J7A8_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 1.810e-66
Identity = 97/114 (85.09%), Postives = 109/114 (95.61%), Query Frame = 1 
Query:    1 ADVAGLTKCSESASFNKRLESSVKKLEGRIQKYESGSPPALALEKQIDRTKQRFDRYSNSELLCGKDGLPHLITDGRWNHAVEFMIPGMMFLYIAGWIGWVGRSYLNTITNSSS 342
            ADVAGLTKCSES +FNKRLE SVKKLEGR+QKYE  SPPALALE+QI+RTKQRF+RYSNSELLCGK+GLPHLITDGRW+HAVEFMIPGMMFLYI GWIGWVGRSYLNT++N+++
Sbjct:   56 ADVAGLTKCSESVAFNKRLELSVKKLEGRVQKYEPNSPPALALEQQINRTKQRFNRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYITGWIGWVGRSYLNTVSNTTN 169
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BLAST of mRNA_P-fluviatile_contig89.14950.1 vs. uniprot
Match: A0A344PFC1_9PHAE (Photosystem I reaction center subunit III n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A344PFC1_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 1.060e-65
Identity = 98/116 (84.48%), Postives = 110/116 (94.83%), Query Frame = 1 
Query:    1 ADVAGLTKCSESASFNKRLESSVKKLEGRIQKYESGSPPALALEKQIDRTKQRFDRYSNSELLCGKDGLPHLITDGRWNHAVEFMIPGMMFLYIAGWIGWVGRSYLNTITNSSSNP 348
            ADVAGLTKCS+S++F KRL+SSVKKLEGRI+KYE  SPPALALE+QI+RTKQRFDRYSNS+LLCGKDGLPHLITDGRWNHAVEF+IPGMMFLYI+GWIGWVGRSYLNT++   SNP
Sbjct:   24 ADVAGLTKCSDSSAFTKRLDSSVKKLEGRIKKYEPNSPPALALEQQINRTKQRFDRYSNSQLLCGKDGLPHLITDGRWNHAVEFVIPGMMFLYISGWIGWVGRSYLNTVS-VFSNP 138
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BLAST of mRNA_P-fluviatile_contig89.14950.1 vs. uniprot
Match: A0A8F0JXW8_9PHAE (Photosystem I reaction center subunit III n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0JXW8_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 1.460e-65
Identity = 95/114 (83.33%), Postives = 109/114 (95.61%), Query Frame = 1 
Query:    1 ADVAGLTKCSESASFNKRLESSVKKLEGRIQKYESGSPPALALEKQIDRTKQRFDRYSNSELLCGKDGLPHLITDGRWNHAVEFMIPGMMFLYIAGWIGWVGRSYLNTITNSSS 342
            ADVAGLTKCSESA FNKRLE+SVKKLE R+QKYE GSPPALALE+QI+RTKQRFDRYS SELLCGK+GLPHLITDGRW+H+VEF+IPG+MFLYI+GWIGWVGRSYLNT++ +S+
Sbjct:   23 ADVAGLTKCSESAPFNKRLEASVKKLESRVQKYEVGSPPALALEQQINRTKQRFDRYSKSELLCGKEGLPHLITDGRWDHSVEFVIPGLMFLYISGWIGWVGRSYLNTVSKTSN 136
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BLAST of mRNA_P-fluviatile_contig89.14950.1 vs. uniprot
Match: A0A141BSG7_9PHAE (Photosystem I reaction center subunit III n=15 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSG7_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 1.280e-64
Identity = 95/116 (81.90%), Postives = 112/116 (96.55%), Query Frame = 1 
Query:    1 ADVAGLTKCSESASFNKRLESSVKKLEGRIQKYESGSPPALALEKQIDRTKQRFDRYSNSELLCGKDGLPHLITDGRWNHAVEFMIPGMMFLYIAGWIGWVGRSYLNTITNSSSNP 348
            ADVAGLTKCSES++FN RLESSV+KLE RI+KYE+GSPPALALE+QI+RTKQRF+RYSNSELLCGKDGLPHLITDGRW+HAVEF+IPG+MF+YI+GWIGWVGRSY+N I+ ++SNP
Sbjct:   25 ADVAGLTKCSESSAFNNRLESSVRKLESRIKKYETGSPPALALEQQINRTKQRFNRYSNSELLCGKDGLPHLITDGRWDHAVEFIIPGIMFIYISGWIGWVGRSYINNIS-TTSNP 139
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BLAST of mRNA_P-fluviatile_contig89.14950.1 vs. uniprot
Match: A0A1I9LVT8_9PHAE (Photosystem I reaction center subunit III n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVT8_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 5.040e-64
Identity = 95/116 (81.90%), Postives = 107/116 (92.24%), Query Frame = 1 
Query:    1 ADVAGLTKCSESASFNKRLESSVKKLEGRIQKYESGSPPALALEKQIDRTKQRFDRYSNSELLCGKDGLPHLITDGRWNHAVEFMIPGMMFLYIAGWIGWVGRSYLNTITNSSSNP 348
            ADVAGLTKCS+S+ FNKRLESSVKKLE RI+KYE  SPPAL L++QI  TK+RFDRYSNSELLCGKDGLPHLITDGRW+HAVEFMIPG+MFLYI+GWIGWVGRSYLNT++ +S NP
Sbjct:   56 ADVAGLTKCSDSSPFNKRLESSVKKLETRIKKYEPNSPPALVLQEQIRTTKKRFDRYSNSELLCGKDGLPHLITDGRWDHAVEFMIPGIMFLYISGWIGWVGRSYLNTVSKTSLNP 171
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BLAST of mRNA_P-fluviatile_contig89.14950.1 vs. uniprot
Match: A0A2R4QPX5_9PHAE (Photosystem I reaction center subunit III n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPX5_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 7.360e-64
Identity = 89/114 (78.07%), Postives = 109/114 (95.61%), Query Frame = 1 
Query:    1 ADVAGLTKCSESASFNKRLESSVKKLEGRIQKYESGSPPALALEKQIDRTKQRFDRYSNSELLCGKDGLPHLITDGRWNHAVEFMIPGMMFLYIAGWIGWVGRSYLNTITNSSS 342
            AD+AGLTKCS+S++FN RL+SSVKKLE R++KYE+GSPPALALE+QI RTKQRF+RYSNSELLCGKDGLPHLITDGRW+HAVEF+IPG+MF+YI+GWIGWVGRSY+N ++N+ +
Sbjct:   25 ADIAGLTKCSDSSTFNNRLDSSVKKLESRVKKYEAGSPPALALEQQISRTKQRFNRYSNSELLCGKDGLPHLITDGRWDHAVEFVIPGLMFIYISGWIGWVGRSYINNVSNTKN 138
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BLAST of mRNA_P-fluviatile_contig89.14950.1 vs. uniprot
Match: A0A0S0GAQ3_COSCS (Photosystem I reaction center subunit III n=29 Tax=Laminariales TaxID=2886 RepID=A0A0S0GAQ3_COSCS)

HSP 1 Score: 199 bits (507), Expect = 3.520e-63
Identity = 95/116 (81.90%), Postives = 107/116 (92.24%), Query Frame = 1 
Query:    1 ADVAGLTKCSESASFNKRLESSVKKLEGRIQKYESGSPPALALEKQIDRTKQRFDRYSNSELLCGKDGLPHLITDGRWNHAVEFMIPGMMFLYIAGWIGWVGRSYLNTITNSSSNP 348
            ADVAGLTKCSESA FNKR ++SVKKLE R++KYE GSPPALALE+QI RTKQRF RYSNSELLCGK+GLPHLITDGRW+HAVEF+IPGMMFLYI+GWIGW GRSYLNT+  ++SNP
Sbjct:   41 ADVAGLTKCSESAPFNKRFDASVKKLEVRVKKYEPGSPPALALEQQITRTKQRFTRYSNSELLCGKEGLPHLITDGRWDHAVEFVIPGMMFLYISGWIGWAGRSYLNTV-GATSNP 155
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BLAST of mRNA_P-fluviatile_contig89.14950.1 vs. uniprot
Match: A0A8F0F743_9PHAE (Photosystem I reaction center subunit III n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F743_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 9.420e-63
Identity = 93/116 (80.17%), Postives = 106/116 (91.38%), Query Frame = 1 
Query:    1 ADVAGLTKCSESASFNKRLESSVKKLEGRIQKYESGSPPALALEKQIDRTKQRFDRYSNSELLCGKDGLPHLITDGRWNHAVEFMIPGMMFLYIAGWIGWVGRSYLNTITNSSSNP 348
            ADVAGLTKCS+SA+FNKR + SVKKLE RIQKYE GSPP LALE+QI+RTK RF+RYSNSELLCGKDGLPHLITDGRW+HAVEF+IPG+MF+YI+GWIGWVGR Y+NTI  +S NP
Sbjct:   28 ADVAGLTKCSDSAAFNKRFDGSVKKLETRIQKYEPGSPPTLALEQQIERTKNRFNRYSNSELLCGKDGLPHLITDGRWDHAVEFIIPGIMFIYISGWIGWVGRKYINTI-GTSKNP 142
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig89.14950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B7ILH5_9PHAE2.290e-6988.60Photosystem I reaction center subunit III n=1 Tax=... [more]
A0A8F0FAP0_9PHAE9.290e-6987.72Photosystem I reaction center subunit III n=1 Tax=... [more]
D1J7A8_ECTSI1.810e-6685.09Photosystem I reaction center subunit III n=2 Tax=... [more]
A0A344PFC1_9PHAE1.060e-6584.48Photosystem I reaction center subunit III n=5 Tax=... [more]
A0A8F0JXW8_9PHAE1.460e-6583.33Photosystem I reaction center subunit III n=2 Tax=... [more]
A0A141BSG7_9PHAE1.280e-6481.90Photosystem I reaction center subunit III n=15 Tax... [more]
A0A1I9LVT8_9PHAE5.040e-6481.90Photosystem I reaction center subunit III n=1 Tax=... [more]
A0A2R4QPX5_9PHAE7.360e-6478.07Photosystem I reaction center subunit III n=3 Tax=... [more]
A0A0S0GAQ3_COSCS3.520e-6381.90Photosystem I reaction center subunit III n=29 Tax... [more]
A0A8F0F743_9PHAE9.420e-6380.17Photosystem I reaction center subunit III n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig89contigP-fluviatile_contig89:12983..13332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score212.6
Seed ortholog evalue9.7e-53
Seed eggNOG ortholog2880.D1J7A8
Preferred namepsaF
KEGG koko:K02694
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00163
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009543,GO:0009570,GO:0009579,GO:0009941,GO:0010287,GO:0016020,GO:0019904,GO:0031967,GO:0031975,GO:0031976,GO:0031977,GO:0031978,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.photosynthesis
EggNOG OGs28NRD@1,2QTZ8@2759
COG Functional cat.S
BiGG ReactioniRC1080.CRv4_Au5_s9_g15717_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Hectar predicted targeting categoryother localisation
Exons1
Model size350
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817299.0018082-CDS-P-fluviatile_contig89:12982..133301622817299.0018082-CDS-P-fluviatile_contig89:12982..13330Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 12983..13330 +
1693571980.5248654-CDS-P-fluviatile_contig89:12982..133301693571980.5248654-CDS-P-fluviatile_contig89:12982..13330Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 12983..13330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig89.14950.1prot_P-fluviatile_contig89.14950.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig89 12983..13330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig89.14950.1

>prot_P-fluviatile_contig89.14950.1 ID=prot_P-fluviatile_contig89.14950.1|Name=mRNA_P-fluviatile_contig89.14950.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=116bp
ADVAGLTKCSESASFNKRLESSVKKLEGRIQKYESGSPPALALEKQIDRT
KQRFDRYSNSELLCGKDGLPHLITDGRWNHAVEFMIPGMMFLYIAGWIGW
VGRSYLNTITNSSSNP
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mRNA from alignment at P-fluviatile_contig89:12983..13332+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig89.14950.1 ID=mRNA_P-fluviatile_contig89.14950.1|Name=mRNA_P-fluviatile_contig89.14950.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=350bp|location=Sequence derived from alignment at P-fluviatile_contig89:12983..13332+ (Porterinema fluviatile SAG_2381)
GCAGATGTTGCAGGGCTAACAAAATGTAGTGAGTCTGCATCATTCAATAA
AAGGCTAGAATCAAGTGTCAAAAAATTAGAAGGAAGAATCCAAAAATATG
AATCGGGTTCACCTCCAGCATTAGCTTTAGAAAAACAAATAGATCGAACT
AAACAAAGATTTGATCGTTATTCTAATTCTGAATTACTATGTGGTAAAGA
TGGTTTACCGCATCTTATAACGGACGGAAGATGGAATCATGCTGTTGAGT
TTATGATTCCAGGAATGATGTTTCTATATATTGCCGGCTGGATAGGTTGG
GTTGGTCGAAGTTATTTAAATACTATAACTAATAGCTCTTCAAATCCGAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig89:12983..13332+

>mRNA_P-fluviatile_contig89.14950.1 ID=mRNA_P-fluviatile_contig89.14950.1|Name=mRNA_P-fluviatile_contig89.14950.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=696bp|location=Sequence derived from alignment at P-fluviatile_contig89:12983..13332+ (Porterinema fluviatile SAG_2381)
GCAGATGTTGCAGGGCTAACAAAATGTAGTGAGTCTGCATCATTCAATAA
AAGGCTAGAATCAAGTGTCAAAAAATTAGAAGGAAGAATCCAAAAATATG
AATCGGGTTCACCTCCAGCATTAGCTTTAGAAAAACAAATAGATCGAACT
AAACAAAGATTTGATCGTTATTCTAATTCTGAATTACTATGTGGTAAAGA
TGGTTTACCGCATCTTATAACGGACGGAAGATGGAATCATGCTGTTGAGT
TTATGATTCCAGGAATGATGTTTCTATATATTGCCGGCTGGATAGGTTGG
GTTGGTCGAAGTTATTTAAATACTATAACTAATAGCTCTTCAAATCCGGC
AGATGTTGCAGGGCTAACAAAATGTAGTGAGTCTGCATCATTCAATAAAA
GGCTAGAATCAAGTGTCAAAAAATTAGAAGGAAGAATCCAAAAATATGAA
TCGGGTTCACCTCCAGCATTAGCTTTAGAAAAACAAATAGATCGAACTAA
ACAAAGATTTGATCGTTATTCTAATTCTGAATTACTATGTGGTAAAGATG
GTTTACCGCATCTTATAACGGACGGAAGATGGAATCATGCTGTTGAGTTT
ATGATTCCAGGAATGATGTTTCTATATATTGCCGGCTGGATAGGTTGGGT
TGGTCGAAGTTATTTAAATACTATAACTAATAGCTCTTCAAATCCG
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