mRNA_P-fluviatile_contig89.14948.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig89.14948.1
Unique NamemRNA_P-fluviatile_contig89.14948.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig89.14948.1 vs. uniprot
Match: D1J7A7_ECTSI (Light-independent protochlorophyllide reductase subunit N n=42 Tax=Phaeophyceae TaxID=2870 RepID=D1J7A7_ECTSI)

HSP 1 Score: 276 bits (705), Expect = 1.990e-89
Identity = 135/139 (97.12%), Postives = 138/139 (99.28%), Query Frame = 1 
Query:    1 CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQLSDYEELKRLCLQVKRDRNPSVIFWIGTCTTEIIKMDLEGIAPKLEIEIDLPIVVARANGLDYAFTQGEDTVLAALAQRPNQQNSK 417
            CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQLSDYEELKRLCLQVKRDRNP+VIFWIGTCTTEIIKMDLEGIAPKLE+EIDLPIVVARANGLDYAFTQGEDTVLAALAQRPNQ+ SK
Sbjct:   33 CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQLSDYEELKRLCLQVKRDRNPTVIFWIGTCTTEIIKMDLEGIAPKLEVEIDLPIVVARANGLDYAFTQGEDTVLAALAQRPNQEKSK 171
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BLAST of mRNA_P-fluviatile_contig89.14948.1 vs. uniprot
Match: A0A8F0JZA7_9PHAE (Light-independent protochlorophyllide reductase subunit N n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZA7_9PHAE)

HSP 1 Score: 275 bits (702), Expect = 5.050e-89
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 1 
Query:    1 CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQLSDYEELKRLCLQVKRDRNPSVIFWIGTCTTEIIKMDLEGIAPKLEIEIDLPIVVARANGLDYAFTQGEDTVLAALAQRPNQQNSKN 420
            CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQLSDYEELKRLCLQVKRDRNPSVIFWIGTCTTEIIKMDLEGIAPKLE+EI+LPIVVARANGLDYAFTQGEDTVLAALAQRPN + SKN
Sbjct:   33 CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQLSDYEELKRLCLQVKRDRNPSVIFWIGTCTTEIIKMDLEGIAPKLEVEINLPIVVARANGLDYAFTQGEDTVLAALAQRPNSKQSKN 172
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BLAST of mRNA_P-fluviatile_contig89.14948.1 vs. uniprot
Match: A0A2R4QPZ1_9PHAE (Light-independent protochlorophyllide reductase subunit N n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPZ1_9PHAE)

HSP 1 Score: 266 bits (681), Expect = 7.830e-86
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = 1 
Query:    1 CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQLSDYEELKRLCLQVKRDRNPSVIFWIGTCTTEIIKMDLEGIAPKLEIEIDLPIVVARANGLDYAFTQGEDTVLAALAQRPN 402
            CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQL+DYEELKRLCLQ+KRDRNPSVIFWIGTCTTEIIKMDLEGIAPKLE EI LPIVVARANGLDYAFTQGEDTVLAALAQRPN
Sbjct:   33 CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQLNDYEELKRLCLQIKRDRNPSVIFWIGTCTTEIIKMDLEGIAPKLEAEISLPIVVARANGLDYAFTQGEDTVLAALAQRPN 166
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BLAST of mRNA_P-fluviatile_contig89.14948.1 vs. uniprot
Match: A0A7S6U9V0_9STRA (Light-independent protochlorophyllide reductase subunit N n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9V0_9STRA)

HSP 1 Score: 264 bits (675), Expect = 5.460e-85
Identity = 129/134 (96.27%), Postives = 131/134 (97.76%), Query Frame = 1 
Query:    1 CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQLSDYEELKRLCLQVKRDRNPSVIFWIGTCTTEIIKMDLEGIAPKLEIEIDLPIVVARANGLDYAFTQGEDTVLAALAQRPN 402
            CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQLSDYEELKRLCLQ+KRDRNPSVIFWIGTCTTEIIKMDLEGIAPKLE EI LPI+VARANGLDYAFTQGEDTVLAALAQR N
Sbjct:   35 CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQLSDYEELKRLCLQIKRDRNPSVIFWIGTCTTEIIKMDLEGIAPKLEAEISLPIIVARANGLDYAFTQGEDTVLAALAQRSN 168
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BLAST of mRNA_P-fluviatile_contig89.14948.1 vs. uniprot
Match: A0A141BSG8_9PHAE (Light-independent protochlorophyllide reductase subunit N n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSG8_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 5.940e-85
Identity = 128/139 (92.09%), Postives = 136/139 (97.84%), Query Frame = 1 
Query:    1 CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQLSDYEELKRLCLQVKRDRNPSVIFWIGTCTTEIIKMDLEGIAPKLEIEIDLPIVVARANGLDYAFTQGEDTVLAALAQRPNQQNSK 417
            CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQL+DY+ELKRLCLQ+K+DRNPSVIFWIGTCTTEIIKMDLEGIAPKLE EI LPI+VARANGLDYAFTQGEDTVLAALAQRPN ++S+
Sbjct:   33 CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQLNDYQELKRLCLQIKQDRNPSVIFWIGTCTTEIIKMDLEGIAPKLEAEISLPIIVARANGLDYAFTQGEDTVLAALAQRPNLKHSE 171
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BLAST of mRNA_P-fluviatile_contig89.14948.1 vs. uniprot
Match: A0A2I4Q2D6_9PHAE (Light-independent protochlorophyllide reductase subunit N n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2D6_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 1.830e-84
Identity = 129/135 (95.56%), Postives = 132/135 (97.78%), Query Frame = 1 
Query:    1 CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQLSDYEELKRLCLQVKRDRNPSVIFWIGTCTTEIIKMDLEGIAPKLEIEIDLPIVVARANGLDYAFTQGEDTVLAALAQRPNQ 405
            CVAWLYQKI+DSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQLSD+EELKRLCLQ+KRDRNPSVIFWIGTCTTEIIKMDLEGIAPKLE EI LPIVVARANGLDYAFTQGEDTVLAALAQR NQ
Sbjct:   33 CVAWLYQKIQDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQLSDFEELKRLCLQIKRDRNPSVIFWIGTCTTEIIKMDLEGIAPKLEAEIKLPIVVARANGLDYAFTQGEDTVLAALAQRSNQ 167
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BLAST of mRNA_P-fluviatile_contig89.14948.1 vs. uniprot
Match: A0A8F0F745_9PHAE (Light-independent protochlorophyllide reductase subunit N n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F745_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 2.850e-84
Identity = 128/134 (95.52%), Postives = 132/134 (98.51%), Query Frame = 1 
Query:    1 CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQLSDYEELKRLCLQVKRDRNPSVIFWIGTCTTEIIKMDLEGIAPKLEIEIDLPIVVARANGLDYAFTQGEDTVLAALAQRPN 402
            CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQL+DYEELKRLCLQ++RDRNPSVIFWIGTCTTEIIKMDLEGIAPKLE EI+LPIVVARANGLDYAFTQGEDTVLAALAQR N
Sbjct:   33 CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQLNDYEELKRLCLQIQRDRNPSVIFWIGTCTTEIIKMDLEGIAPKLEAEINLPIVVARANGLDYAFTQGEDTVLAALAQRSN 166
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BLAST of mRNA_P-fluviatile_contig89.14948.1 vs. uniprot
Match: A0A7U0KSM1_OLILU (Light-independent protochlorophyllide reductase subunit N n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=A0A7U0KSM1_OLILU)

HSP 1 Score: 261 bits (668), Expect = 4.820e-84
Identity = 130/140 (92.86%), Postives = 132/140 (94.29%), Query Frame = 1 
Query:    1 CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQLSDYEELKRLCLQVKRDRNPSVIFWIGTCTTEIIKMDLEGIAPKLEIEIDLPIVVARANGLDYAFTQGEDTVLAALAQRPNQQNSKN 420
            CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQLSDY ELKRLCLQ+KRDRNPSVIFWIGTCTTEIIKMDLEGIAPKLE EI LPIVVARANGLDYAFTQGEDTVLAALAQ  +  NS N
Sbjct:   26 CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQLSDYNELKRLCLQIKRDRNPSVIFWIGTCTTEIIKMDLEGIAPKLEKEIQLPIVVARANGLDYAFTQGEDTVLAALAQHTSNINSSN 165
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BLAST of mRNA_P-fluviatile_contig89.14948.1 vs. uniprot
Match: A0A8E5XRE7_9PHAE (Light-independent protochlorophyllide reductase subunit N n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRE7_9PHAE)

HSP 1 Score: 259 bits (662), Expect = 4.700e-83
Identity = 127/131 (96.95%), Postives = 130/131 (99.24%), Query Frame = 1 
Query:    1 CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQLSDYEELKRLCLQVKRDRNPSVIFWIGTCTTEIIKMDLEGIAPKLEIEIDLPIVVARANGLDYAFTQGEDTVLAALAQ 393
            CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQLSDYEELKRLCLQ+KRDR+PSVIFWIGTCTTEIIKMDLEGIAPKLE EI+LPIVVARANGLDYAFTQGEDTVLAALAQ
Sbjct:   32 CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQLSDYEELKRLCLQIKRDRDPSVIFWIGTCTTEIIKMDLEGIAPKLEAEINLPIVVARANGLDYAFTQGEDTVLAALAQ 162
[Close]
BLAST of mRNA_P-fluviatile_contig89.14948.1 vs. uniprot
Match: B7T1Z7_VAULI (Light-independent protochlorophyllide reductase subunit N n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1Z7_VAULI)

HSP 1 Score: 258 bits (659), Expect = 1.700e-82
Identity = 124/132 (93.94%), Postives = 131/132 (99.24%), Query Frame = 1 
Query:    1 CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQLSDYEELKRLCLQVKRDRNPSVIFWIGTCTTEIIKMDLEGIAPKLEIEIDLPIVVARANGLDYAFTQGEDTVLAALAQR 396
            CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQL+DY+ELKRLCLQ+++DRNPSVIFWIGTCTTEIIKMDLEGIAPKLE+EI LPI+VARANGLDYAFTQGEDTVLAALAQR
Sbjct:   33 CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDISAQLNDYQELKRLCLQIQQDRNPSVIFWIGTCTTEIIKMDLEGIAPKLEVEIGLPIIVARANGLDYAFTQGEDTVLAALAQR 164
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig89.14948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J7A7_ECTSI1.990e-8997.12Light-independent protochlorophyllide reductase su... [more]
A0A8F0JZA7_9PHAE5.050e-8996.43Light-independent protochlorophyllide reductase su... [more]
A0A2R4QPZ1_9PHAE7.830e-8697.01Light-independent protochlorophyllide reductase su... [more]
A0A7S6U9V0_9STRA5.460e-8596.27Light-independent protochlorophyllide reductase su... [more]
A0A141BSG8_9PHAE5.940e-8592.09Light-independent protochlorophyllide reductase su... [more]
A0A2I4Q2D6_9PHAE1.830e-8495.56Light-independent protochlorophyllide reductase su... [more]
A0A8F0F745_9PHAE2.850e-8495.52Light-independent protochlorophyllide reductase su... [more]
A0A7U0KSM1_OLILU4.820e-8492.86Light-independent protochlorophyllide reductase su... [more]
A0A8E5XRE7_9PHAE4.700e-8396.95Light-independent protochlorophyllide reductase su... [more]
B7T1Z7_VAULI1.700e-8293.94Light-independent protochlorophyllide reductase su... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig89contigP-fluviatile_contig89:10280..10701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score276.9
Seed ortholog evalue5e-72
Seed eggNOG ortholog2880.D1J7A7
Preferred namechlN
KEGG rclassRC01008
KEGG koko:K04038
KEGG ReactionR06282
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (ChlN-ChlB) is the catalytic component of the complex
EggNOG OGs2QQ7U@2759,COG2710@1
EC1.3.7.7
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size422
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817298.9228015-CDS-P-fluviatile_contig89:10279..106991622817298.9228015-CDS-P-fluviatile_contig89:10279..10699Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 10280..10699 +
1693571980.4857342-CDS-P-fluviatile_contig89:10279..106991693571980.4857342-CDS-P-fluviatile_contig89:10279..10699Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 10280..10699 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig89.14948.1prot_P-fluviatile_contig89.14948.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig89 10280..10699 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig89.14948.1

>prot_P-fluviatile_contig89.14948.1 ID=prot_P-fluviatile_contig89.14948.1|Name=mRNA_P-fluviatile_contig89.14948.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=140bp
CVAWLYQKIEDSFFLVIGTKTCGYFLQNALGVMIFAEPRYAMAELEEGDI
SAQLSDYEELKRLCLQVKRDRNPSVIFWIGTCTTEIIKMDLEGIAPKLEI
EIDLPIVVARANGLDYAFTQGEDTVLAALAQRPNQQNSKN
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mRNA from alignment at P-fluviatile_contig89:10280..10701+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig89.14948.1 ID=mRNA_P-fluviatile_contig89.14948.1|Name=mRNA_P-fluviatile_contig89.14948.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=422bp|location=Sequence derived from alignment at P-fluviatile_contig89:10280..10701+ (Porterinema fluviatile SAG_2381)
TGTGTTGCATGGTTATATCAAAAAATTGAAGACAGTTTTTTTTTAGTTAT
TGGTACAAAAACATGTGGGTATTTTCTACAAAATGCTTTAGGGGTTATGA
TTTTTGCGGAACCCCGTTATGCTATGGCTGAGTTAGAAGAAGGGGATATT
TCTGCCCAGTTAAGCGATTATGAAGAATTAAAACGCTTATGTTTGCAGGT
AAAAAGAGATCGAAATCCAAGTGTTATTTTTTGGATTGGTACATGCACTA
CAGAAATAATAAAAATGGATTTAGAAGGCATTGCACCGAAGTTAGAAATC
GAAATAGACTTACCTATTGTTGTAGCAAGAGCAAATGGGCTTGATTATGC
TTTTACTCAAGGCGAGGATACAGTATTAGCTGCTTTGGCGCAAAGACCTA
ATCAGCAAAACTCAAAAAATTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig89:10280..10701+

>mRNA_P-fluviatile_contig89.14948.1 ID=mRNA_P-fluviatile_contig89.14948.1|Name=mRNA_P-fluviatile_contig89.14948.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=840bp|location=Sequence derived from alignment at P-fluviatile_contig89:10280..10701+ (Porterinema fluviatile SAG_2381)
TGTGTTGCATGGTTATATCAAAAAATTGAAGACAGTTTTTTTTTAGTTAT
TGGTACAAAAACATGTGGGTATTTTCTACAAAATGCTTTAGGGGTTATGA
TTTTTGCGGAACCCCGTTATGCTATGGCTGAGTTAGAAGAAGGGGATATT
TCTGCCCAGTTAAGCGATTATGAAGAATTAAAACGCTTATGTTTGCAGGT
AAAAAGAGATCGAAATCCAAGTGTTATTTTTTGGATTGGTACATGCACTA
CAGAAATAATAAAAATGGATTTAGAAGGCATTGCACCGAAGTTAGAAATC
GAAATAGACTTACCTATTGTTGTAGCAAGAGCAAATGGGCTTGATTATGC
TTTTACTCAAGGCGAGGATACAGTATTAGCTGCTTTGGCGCAAAGACCTA
ATCAGCAAAACTCAAAAAATTGTGTTGCATGGTTATATCAAAAAATTGAA
GACAGTTTTTTTTTAGTTATTGGTACAAAAACATGTGGGTATTTTCTACA
AAATGCTTTAGGGGTTATGATTTTTGCGGAACCCCGTTATGCTATGGCTG
AGTTAGAAGAAGGGGATATTTCTGCCCAGTTAAGCGATTATGAAGAATTA
AAACGCTTATGTTTGCAGGTAAAAAGAGATCGAAATCCAAGTGTTATTTT
TTGGATTGGTACATGCACTACAGAAATAATAAAAATGGATTTAGAAGGCA
TTGCACCGAAGTTAGAAATCGAAATAGACTTACCTATTGTTGTAGCAAGA
GCAAATGGGCTTGATTATGCTTTTACTCAAGGCGAGGATACAGTATTAGC
TGCTTTGGCGCAAAGACCTAATCAGCAAAACTCAAAAAAT
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