mRNA_P-fluviatile_contig86.14913.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig86.14913.1
Unique NamemRNA_P-fluviatile_contig86.14913.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig86.14913.1 vs. uniprot
Match: Q8QNN4_ESV1K (EsV-1-27 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNN4_ESV1K)

HSP 1 Score: 190 bits (483), Expect = 1.220e-56
Identity = 134/212 (63.21%), Postives = 162/212 (76.42%), Query Frame = 1 
Query:   88 ILVRFVAMTILRSLGAVVEFTVETSINTVSFVRXXXXXXXXXXXXXXXXXXXXXXNQFVSVWRLVVTLVTVGLGESCFLATTIPMRIADALRDVGLSIKAFARGPLGLAAVVKAQAVDVKTTVDVKTIIRQAVASFMASLMYVLKGDENKVSDGLVPNVVREVAKTLPMSFDLAKLVLLNTADVSRKTLSVAFSSLVELTSLRGIMLGCSGK 723
            ILVRFV MT+LRSL + V F  ET+IN      XXXXXXXXXXXXXXXXXXXXXX Q VSVWRLVVT++T  LGE+C+LAT    R+ D   D  LS++AF+ G  GLA V+KAQA DVKT V++ +II QA+ SF+ +L+Y+LKGDENK SDG+VPN+  EV K LP+SFDL KL+L  T D+S++TL VAFSSL EL SLRGI+ GC GK
Sbjct:   52 ILVRFVVMTLLRSLASTVSFIGETTINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLVSVWRLVVTILTATLGETCYLATNGIGRVFDFFSDYLLSLQAFSSGLPGLAKVLKAQADDVKTGVNLGSIISQAIQSFVDTLVYILKGDENKFSDGIVPNLFTEVFKLLPLSFDLGKLILQGTFDISKETLGVAFSSLKELASLRGIVAGCRGK 263
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BLAST of mRNA_P-fluviatile_contig86.14913.1 vs. uniprot
Match: D8LP64_ECTSI (EsV-1-27 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP64_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 3.500e-14
Identity = 73/121 (60.33%), Postives = 86/121 (71.07%), Query Frame = 1 
Query:  109 MTILRSLGAVVEFTVETSINTVSFVRXXXXXXXXXXXXXXXXXXXXXXNQFVSVWRLVVTLVTVGLGESCFLATTIPMRIADALRDVGLSIKAFARGPLGLAAVVKAQAVDVKTTVDVKTI 471
            MT+LRSL + V F  ET+IN      XXXXXXXXXXXXXXXXXXXXXX+Q VSVWRLVV ++T  LGE+C+LAT    R+ D   D  LS++AF  G  GLA V+KAQ  DVKT V+V  I
Sbjct:    1 MTLLRSLASTVSFVGETTINXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQLVSVWRLVVVIITATLGETCYLATNGIDRVFDFFSDYMLSLQAFRSGLPGLAKVLKAQVDDVKTGVNVTNI 121
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig86.14913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNN4_ESV1K1.220e-5663.21EsV-1-27 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LP64_ECTSI3.500e-1460.33EsV-1-27 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig86contigP-fluviatile_contig86:77708..78433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size726
Cds size726
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817294.8790514-CDS-P-fluviatile_contig86:77707..784331622817294.8790514-CDS-P-fluviatile_contig86:77707..78433Porterinema fluviatile SAG_2381CDSP-fluviatile_contig86 77708..78433 +
1693571970.2092662-CDS-P-fluviatile_contig86:77707..784331693571970.2092662-CDS-P-fluviatile_contig86:77707..78433Porterinema fluviatile SAG_2381CDSP-fluviatile_contig86 77708..78433 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig86.14913.1prot_P-fluviatile_contig86.14913.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig86 77708..78433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig86.14913.1

>prot_P-fluviatile_contig86.14913.1 ID=prot_P-fluviatile_contig86.14913.1|Name=mRNA_P-fluviatile_contig86.14913.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=242bp
MGKEAVKKAIFGVAALVISILTNSLLMAVILVRFVAMTILRSLGAVVEFT
VETSINTVSFVRDTVFSVLTFAVQTLTSVILFTLNQFVSVWRLVVTLVTV
GLGESCFLATTIPMRIADALRDVGLSIKAFARGPLGLAAVVKAQAVDVKT
TVDVKTIIRQAVASFMASLMYVLKGDENKVSDGLVPNVVREVAKTLPMSF
DLAKLVLLNTADVSRKTLSVAFSSLVELTSLRGIMLGCSGK*
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mRNA from alignment at P-fluviatile_contig86:77708..78433+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig86.14913.1 ID=mRNA_P-fluviatile_contig86.14913.1|Name=mRNA_P-fluviatile_contig86.14913.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=726bp|location=Sequence derived from alignment at P-fluviatile_contig86:77708..78433+ (Porterinema fluviatile SAG_2381)
ATGGGGAAAGAGGCCGTAAAGAAAGCCATCTTCGGGGTCGCGGCGCTCGT
CATCTCGATCCTCACGAACTCCCTCCTGATGGCCGTCATCCTCGTCCGGT
TCGTCGCGATGACGATACTGAGATCGCTCGGCGCCGTGGTGGAGTTCACC
GTCGAGACGTCCATCAACACGGTGTCGTTCGTCAGGGACACGGTGTTCTC
CGTCCTCACTTTCGCGGTCCAGACGCTGACGAGCGTCATCCTGTTCACGC
TGAACCAGTTCGTCTCCGTCTGGAGACTCGTCGTCACCCTGGTGACCGTC
GGTCTCGGGGAATCGTGTTTCCTGGCGACGACGATACCAATGAGGATCGC
GGACGCGCTCAGAGACGTGGGTTTGAGCATCAAGGCCTTCGCCAGGGGTC
CCTTAGGTCTGGCCGCCGTCGTCAAGGCGCAGGCCGTCGACGTCAAGACG
ACAGTCGACGTCAAGACGATCATCAGACAGGCGGTCGCTTCCTTCATGGC
CTCGCTGATGTACGTTCTAAAGGGGGACGAGAACAAGGTGTCAGACGGAC
TCGTCCCCAACGTCGTCCGTGAGGTCGCCAAGACGCTCCCGATGTCCTTC
GACCTCGCCAAGCTCGTTCTGCTGAACACCGCGGACGTGTCGAGAAAGAC
GCTCTCGGTCGCCTTTTCTTCGCTCGTGGAGCTGACGTCCCTCCGAGGGA
TAATGCTCGGGTGTAGCGGCAAATAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig86:77708..78433+

>mRNA_P-fluviatile_contig86.14913.1 ID=mRNA_P-fluviatile_contig86.14913.1|Name=mRNA_P-fluviatile_contig86.14913.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1452bp|location=Sequence derived from alignment at P-fluviatile_contig86:77708..78433+ (Porterinema fluviatile SAG_2381)
ATGGGGAAAGAGGCCGTAAAGAAAGCCATCTTCGGGGTCGCGGCGCTCGT
CATCTCGATCCTCACGAACTCCCTCCTGATGGCCGTCATCCTCGTCCGGT
TCGTCGCGATGACGATACTGAGATCGCTCGGCGCCGTGGTGGAGTTCACC
GTCGAGACGTCCATCAACACGGTGTCGTTCGTCAGGGACACGGTGTTCTC
CGTCCTCACTTTCGCGGTCCAGACGCTGACGAGCGTCATCCTGTTCACGC
TGAACCAGTTCGTCTCCGTCTGGAGACTCGTCGTCACCCTGGTGACCGTC
GGTCTCGGGGAATCGTGTTTCCTGGCGACGACGATACCAATGAGGATCGC
GGACGCGCTCAGAGACGTGGGTTTGAGCATCAAGGCCTTCGCCAGGGGTC
CCTTAGGTCTGGCCGCCGTCGTCAAGGCGCAGGCCGTCGACGTCAAGACG
ACAGTCGACGTCAAGACGATCATCAGACAGGCGGTCGCTTCCTTCATGGC
CTCGCTGATGTACGTTCTAAAGGGGGACGAGAACAAGGTGTCAGACGGAC
TCGTCCCCAACGTCGTCCGTGAGGTCGCCAAGACGCTCCCGATGTCCTTC
GACCTCGCCAAGCTCGTTCTGCTGAACACCGCGGACGTGTCGAGAAAGAC
GCTCTCGGTCGCCTTTTCTTCGCTCGTGGAGCTGACGTCCCTCCGAGGGA
TAATGCTCGGGTGTAGCGGCAAATAAATGGGGAAAGAGGCCGTAAAGAAA
GCCATCTTCGGGGTCGCGGCGCTCGTCATCTCGATCCTCACGAACTCCCT
CCTGATGGCCGTCATCCTCGTCCGGTTCGTCGCGATGACGATACTGAGAT
CGCTCGGCGCCGTGGTGGAGTTCACCGTCGAGACGTCCATCAACACGGTG
TCGTTCGTCAGGGACACGGTGTTCTCCGTCCTCACTTTCGCGGTCCAGAC
GCTGACGAGCGTCATCCTGTTCACGCTGAACCAGTTCGTCTCCGTCTGGA
GACTCGTCGTCACCCTGGTGACCGTCGGTCTCGGGGAATCGTGTTTCCTG
GCGACGACGATACCAATGAGGATCGCGGACGCGCTCAGAGACGTGGGTTT
GAGCATCAAGGCCTTCGCCAGGGGTCCCTTAGGTCTGGCCGCCGTCGTCA
AGGCGCAGGCCGTCGACGTCAAGACGACAGTCGACGTCAAGACGATCATC
AGACAGGCGGTCGCTTCCTTCATGGCCTCGCTGATGTACGTTCTAAAGGG
GGACGAGAACAAGGTGTCAGACGGACTCGTCCCCAACGTCGTCCGTGAGG
TCGCCAAGACGCTCCCGATGTCCTTCGACCTCGCCAAGCTCGTTCTGCTG
AACACCGCGGACGTGTCGAGAAAGACGCTCTCGGTCGCCTTTTCTTCGCT
CGTGGAGCTGACGTCCCTCCGAGGGATAATGCTCGGGTGTAGCGGCAAAT
AA
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