mRNA_P-fluviatile_contig86.14908.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig86.14908.1
Unique NamemRNA_P-fluviatile_contig86.14908.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig86.14908.1 vs. uniprot
Match: D8LPL0_ECTSI (EsV-1-191 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL0_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 3.090e-39
Identity = 95/250 (38.00%), Postives = 136/250 (54.40%), Query Frame = 1 
Query:    1 GVRLTLVCESCVQSDELATKTHALSLGVRPADLSRLDCLYRTNPHYRSAPMMRLYVPEELRV---LSEANGERKRGAQESTNEKKERKAAGEALAKKARIDCYNKRLE----RLRNGTKPTPGLVSGDFCSTGTKTPKVGARLVMKRRDLWNRCSRAQLPVNVAVQVFR-----WATSNSELETTVAGALERIRHEKFLFDRIAAAEGHRVLQSLDNVDRLVLLRANPAFEDALHGLPVKNVPTRLSDLC 714
            G+ LT VCE C+ S EL TKT A+SLG R  DL RLD     NP+YR+A    L++ EE++    ++ A  ER+  A++S   K+E ++  + +    R  C  KR++    R++    PTPGLVSGDFC++ TKTPK+    + KR  +W   S   LP  V +  F      +A S  E+E+ VA A        +  D++   EG+RVLQ L  ++RL   RA P+    LHGLPV  +   +  LC
Sbjct:   19 GITLTRVCEGCLVSTELLTKTSAMSLGARVEDLDRLDHRREPNPYYRNAASTYLFLEEEVKYVAGIANAARERRECARKS---KEEIQSRAKRMKHDDRSKCLEKRIQTATSRIKPVGPPTPGLVSGDFCTSATKTPKISVAKLAKRVAIWRSLSNLSLPPRVNLFRFGCANELYALSGEEIESAVASA-------HYSLDKVVLGEGNRVLQFLSPMERLHATRAVPSMHQELHGLPVSAMSDDMYALC 258
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BLAST of mRNA_P-fluviatile_contig86.14908.1 vs. uniprot
Match: Q8QN98_ESV1K (EsV-1-191 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN98_ESV1K)

HSP 1 Score: 142 bits (359), Expect = 2.330e-36
Identity = 91/249 (36.55%), Postives = 140/249 (56.22%), Query Frame = 1 
Query:    1 GVRLTLVCESCVQSDELATKTHALSLGVRPADLSRLDCLYRTNPHYRSAPMMRLYVPEELRV---LSEANGERKRGAQESTNEKKERKAAGEALAKKARIDCYNKRLE----RLRNGTKPTPGLVSGDFCSTGTKTPKVGARLVMKRRDLWNRCSRAQLPVNVAVQVFRWATSNSELET----TVAGALERIRHEKFLFDRIAAAEGHRVLQSLDNVDRLVLLRANPAFEDALHGLPVKNVPTRLSDLC 714
            G+ LT VCE C+ S EL TKT A+SLG R  DL RLD     NP+YR+A    L++ EE++    ++ A+ ER+  A++    K+E +A  + +    R  C  KR++    +++  + PTPGLVSGDFC++ TKTPK+    + KR  +W+  +   L  +  V +FR+  +N EL T     +  +++ + H     DR+   EG+RVL+ L  ++RL + RA P     LHGLPV  +   +  LC
Sbjct:   19 GITLTRVCEGCLVSTELLTKTSAMSLGARVEDLDRLDHRREPNPYYRNAASTYLFLEEEVKYVAGIANADRERRECARKC---KEEIQARAKRMKHDDRARCLEKRIQSATSKIKTVSPPTPGLVSGDFCTSTTKTPKISVAKLAKRVAIWSSLNNFSL--SHRVNLFRFGCAN-ELYTFSGKEIESSVQNVHHS---LDRVVLREGNRVLEFLTPMERLHVSRAVPFTHQELHGLPVSAMSDDMYALC 258
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BLAST of mRNA_P-fluviatile_contig86.14908.1 vs. uniprot
Match: A0A835Z0N9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0N9_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.260e-6
Identity = 69/229 (30.13%), Postives = 95/229 (41.48%), Query Frame = 1 
Query:    1 GVRLTLVCESCVQ-SDELA---TKTHALSLGVRPADLSRLDCLYRTNPHYRSAPMMRLYVPEELRVLSEANGERKRGAQESTNEKKERKAAGEALAKKARIDCYNKRLERLRNGTKPT-PGLVSGDFCSTGTKTPKVGARLVMKRRDLWNRCSRAQLPVNVA--VQVFRWATSNSELETTVAGALERIRHEKFLFDRIAAAEGHRVLQSLDNVDRLVLLRANPAFEDAL 666
            G+R T+ C SC +  D+ A   T+T AL L V  + L RL C  +TNP YRSA  MRLY+  E+  L     E    AQE  +            AK A ++   ++L    N   P+    V  DF     K PK   R V +R+ L    + A L ++     Q+     S   L+T    A     H + L D   A E  R+   L   D+    R  P  +  L
Sbjct:   19 GIRDTVACASCCKPGDDKAQKLTRTAALRL-VSTSALDRLCCETKTNPMYRSAAPMRLYLEAEVMALRHVEAE---AAQEKQH------------AKDAIVEERKRKLSFSVNDVPPSLQDYVFEDFLRP-VKRPKASKRRVEQRQKLVRLATEAALLLHKGPIAQIADTCLSRPALKTPADVAAFVSLHSE-LRDAAVARECVRIATFLTTADKQKACRIVPGLKAGL 229
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig86.14908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LPL0_ECTSI3.090e-3938.00EsV-1-191 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QN98_ESV1K2.330e-3636.55EsV-1-191 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A835Z0N9_9STRA5.260e-630.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig86contigP-fluviatile_contig86:41315..42028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-191
Ec32 orthologEc-06_005010.1
Exons1
Model size714
Cds size714
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817294.6837368-CDS-P-fluviatile_contig86:41314..420281622817294.6837368-CDS-P-fluviatile_contig86:41314..42028Porterinema fluviatile SAG_2381CDSP-fluviatile_contig86 41315..42028 +
1693571969.876554-CDS-P-fluviatile_contig86:41314..420281693571969.876554-CDS-P-fluviatile_contig86:41314..42028Porterinema fluviatile SAG_2381CDSP-fluviatile_contig86 41315..42028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig86.14908.1prot_P-fluviatile_contig86.14908.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig86 41315..42028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig86.14908.1

>prot_P-fluviatile_contig86.14908.1 ID=prot_P-fluviatile_contig86.14908.1|Name=mRNA_P-fluviatile_contig86.14908.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=238bp
GVRLTLVCESCVQSDELATKTHALSLGVRPADLSRLDCLYRTNPHYRSAP
MMRLYVPEELRVLSEANGERKRGAQESTNEKKERKAAGEALAKKARIDCY
NKRLERLRNGTKPTPGLVSGDFCSTGTKTPKVGARLVMKRRDLWNRCSRA
QLPVNVAVQVFRWATSNSELETTVAGALERIRHEKFLFDRIAAAEGHRVL
QSLDNVDRLVLLRANPAFEDALHGLPVKNVPTRLSDLC
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mRNA from alignment at P-fluviatile_contig86:41315..42028+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig86.14908.1 ID=mRNA_P-fluviatile_contig86.14908.1|Name=mRNA_P-fluviatile_contig86.14908.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=714bp|location=Sequence derived from alignment at P-fluviatile_contig86:41315..42028+ (Porterinema fluviatile SAG_2381)
GGCGTGCGCCTGACTCTCGTGTGCGAAAGCTGCGTCCAGTCCGATGAGCT
GGCAACCAAGACGCACGCGCTCTCCCTGGGAGTCCGCCCCGCGGACCTTT
CTCGCCTCGACTGCTTGTACAGGACGAACCCGCACTACAGAAGCGCGCCG
ATGATGCGGCTCTACGTCCCCGAGGAATTGCGCGTCCTCTCCGAGGCGAA
CGGCGAGAGGAAACGCGGCGCGCAAGAAAGCACGAACGAAAAGAAAGAGA
GGAAGGCGGCCGGCGAAGCCCTGGCCAAGAAAGCGAGGATCGACTGCTAC
AACAAGAGACTCGAGAGATTGCGCAACGGTACGAAGCCAACTCCTGGACT
CGTGTCCGGGGACTTCTGCAGCACCGGGACCAAGACGCCGAAGGTCGGCG
CCAGACTCGTGATGAAGAGGAGAGACCTGTGGAACAGGTGCTCCCGCGCG
CAGCTTCCCGTGAACGTGGCCGTCCAGGTGTTCCGCTGGGCGACGTCGAA
CTCCGAGCTGGAGACGACCGTCGCGGGGGCGCTGGAGCGTATACGCCACG
AAAAATTCCTTTTCGATAGGATCGCCGCGGCCGAGGGTCATCGGGTTCTT
CAATCTCTCGACAACGTCGATCGGCTGGTGCTTCTGAGAGCCAACCCCGC
CTTCGAGGACGCTCTCCACGGCCTGCCCGTCAAGAATGTTCCGACGCGGT
TGTCGGACCTGTGT
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Coding sequence (CDS) from alignment at P-fluviatile_contig86:41315..42028+

>mRNA_P-fluviatile_contig86.14908.1 ID=mRNA_P-fluviatile_contig86.14908.1|Name=mRNA_P-fluviatile_contig86.14908.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1428bp|location=Sequence derived from alignment at P-fluviatile_contig86:41315..42028+ (Porterinema fluviatile SAG_2381)
GGCGTGCGCCTGACTCTCGTGTGCGAAAGCTGCGTCCAGTCCGATGAGCT
GGCAACCAAGACGCACGCGCTCTCCCTGGGAGTCCGCCCCGCGGACCTTT
CTCGCCTCGACTGCTTGTACAGGACGAACCCGCACTACAGAAGCGCGCCG
ATGATGCGGCTCTACGTCCCCGAGGAATTGCGCGTCCTCTCCGAGGCGAA
CGGCGAGAGGAAACGCGGCGCGCAAGAAAGCACGAACGAAAAGAAAGAGA
GGAAGGCGGCCGGCGAAGCCCTGGCCAAGAAAGCGAGGATCGACTGCTAC
AACAAGAGACTCGAGAGATTGCGCAACGGTACGAAGCCAACTCCTGGACT
CGTGTCCGGGGACTTCTGCAGCACCGGGACCAAGACGCCGAAGGTCGGCG
CCAGACTCGTGATGAAGAGGAGAGACCTGTGGAACAGGTGCTCCCGCGCG
CAGCTTCCCGTGAACGTGGCCGTCCAGGTGTTCCGCTGGGCGACGTCGAA
CTCCGAGCTGGAGACGACCGTCGCGGGGGCGCTGGAGCGTATACGCCACG
AAAAATTCCTTTTCGATAGGATCGCCGCGGCCGAGGGTCATCGGGTTCTT
CAATCTCTCGACAACGTCGATCGGCTGGTGCTTCTGAGAGCCAACCCCGC
CTTCGAGGACGCTCTCCACGGCCTGCCCGTCAAGAATGTTCCGACGCGGT
TGTCGGACCTGTGTGGCGTGCGCCTGACTCTCGTGTGCGAAAGCTGCGTC
CAGTCCGATGAGCTGGCAACCAAGACGCACGCGCTCTCCCTGGGAGTCCG
CCCCGCGGACCTTTCTCGCCTCGACTGCTTGTACAGGACGAACCCGCACT
ACAGAAGCGCGCCGATGATGCGGCTCTACGTCCCCGAGGAATTGCGCGTC
CTCTCCGAGGCGAACGGCGAGAGGAAACGCGGCGCGCAAGAAAGCACGAA
CGAAAAGAAAGAGAGGAAGGCGGCCGGCGAAGCCCTGGCCAAGAAAGCGA
GGATCGACTGCTACAACAAGAGACTCGAGAGATTGCGCAACGGTACGAAG
CCAACTCCTGGACTCGTGTCCGGGGACTTCTGCAGCACCGGGACCAAGAC
GCCGAAGGTCGGCGCCAGACTCGTGATGAAGAGGAGAGACCTGTGGAACA
GGTGCTCCCGCGCGCAGCTTCCCGTGAACGTGGCCGTCCAGGTGTTCCGC
TGGGCGACGTCGAACTCCGAGCTGGAGACGACCGTCGCGGGGGCGCTGGA
GCGTATACGCCACGAAAAATTCCTTTTCGATAGGATCGCCGCGGCCGAGG
GTCATCGGGTTCTTCAATCTCTCGACAACGTCGATCGGCTGGTGCTTCTG
AGAGCCAACCCCGCCTTCGAGGACGCTCTCCACGGCCTGCCCGTCAAGAA
TGTTCCGACGCGGTTGTCGGACCTGTGT
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