mRNA_P-fluviatile_contig85.14905.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig85.14905.1
Unique NamemRNA_P-fluviatile_contig85.14905.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig85.14905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig85contigP-fluviatile_contig85:247456..247853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size393
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817291.9431922-CDS-P-fluviatile_contig85:247455..2478481622817291.9431922-CDS-P-fluviatile_contig85:247455..247848Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 247456..247848 +
1693571963.714881-CDS-P-fluviatile_contig85:247455..2478481693571963.714881-CDS-P-fluviatile_contig85:247455..247848Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 247456..247848 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817291.9541352-UTR-P-fluviatile_contig85:247848..2478531622817291.9541352-UTR-P-fluviatile_contig85:247848..247853Porterinema fluviatile SAG_2381UTRP-fluviatile_contig85 247849..247853 +
1693571963.7265801-UTR-P-fluviatile_contig85:247848..2478531693571963.7265801-UTR-P-fluviatile_contig85:247848..247853Porterinema fluviatile SAG_2381UTRP-fluviatile_contig85 247849..247853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig85.14905.1prot_P-fluviatile_contig85.14905.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig85 247456..247848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig85.14905.1

>prot_P-fluviatile_contig85.14905.1 ID=prot_P-fluviatile_contig85.14905.1|Name=mRNA_P-fluviatile_contig85.14905.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=131bp
KDRRLRAVGDKSPARVVSGREDWPCSRGSPLVARWPRIVKVGLGFNGVVV
APVDALDRRGIGNLHNVYGCGSRSSPRGSRCRLELFVGPGVHSAHGVGAV
DFTWCIGSTYGVSMVLCPSILDYAVCFGWI*
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mRNA from alignment at P-fluviatile_contig85:247456..247853+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig85.14905.1 ID=mRNA_P-fluviatile_contig85.14905.1|Name=mRNA_P-fluviatile_contig85.14905.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=398bp|location=Sequence derived from alignment at P-fluviatile_contig85:247456..247853+ (Porterinema fluviatile SAG_2381)
AAGGACCGGCGGCTACGGGCCGTAGGCGACAAATCGCCTGCCCGAGTCGT
GTCCGGAAGAGAGGATTGGCCGTGTAGTCGGGGAAGTCCTCTCGTTGCTC
GGTGGCCTCGAATTGTAAAGGTTGGACTTGGTTTCAACGGGGTTGTCGTG
GCGCCTGTGGATGCCCTGGATAGGCGCGGGATTGGCAATCTGCATAATGT
GTATGGTTGCGGTTCGAGGAGTAGCCCACGTGGGTCGCGTTGCCGGCTTG
AGCTGTTCGTGGGACCAGGGGTACATAGTGCCCATGGTGTCGGGGCGGTG
GATTTTACCTGGTGTATCGGCTCTACCTACGGAGTATCCATGGTTCTTTG
CCCGTCTATATTAGACTATGCTGTATGTTTTGGATGGATATGAGGTGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig85:247456..247853+

>mRNA_P-fluviatile_contig85.14905.1 ID=mRNA_P-fluviatile_contig85.14905.1|Name=mRNA_P-fluviatile_contig85.14905.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=786bp|location=Sequence derived from alignment at P-fluviatile_contig85:247456..247853+ (Porterinema fluviatile SAG_2381)
AAGGACCGGCGGCTACGGGCCGTAGGCGACAAATCGCCTGCCCGAGTCGT
GTCCGGAAGAGAGGATTGGCCGTGTAGTCGGGGAAGTCCTCTCGTTGCTC
GGTGGCCTCGAATTGTAAAGGTTGGACTTGGTTTCAACGGGGTTGTCGTG
GCGCCTGTGGATGCCCTGGATAGGCGCGGGATTGGCAATCTGCATAATGT
GTATGGTTGCGGTTCGAGGAGTAGCCCACGTGGGTCGCGTTGCCGGCTTG
AGCTGTTCGTGGGACCAGGGGTACATAGTGCCCATGGTGTCGGGGCGGTG
GATTTTACCTGGTGTATCGGCTCTACCTACGGAGTATCCATGGTTCTTTG
CCCGTCTATATTAGACTATGCTGTATGTTTTGGATGGATATGAAAGGACC
GGCGGCTACGGGCCGTAGGCGACAAATCGCCTGCCCGAGTCGTGTCCGGA
AGAGAGGATTGGCCGTGTAGTCGGGGAAGTCCTCTCGTTGCTCGGTGGCC
TCGAATTGTAAAGGTTGGACTTGGTTTCAACGGGGTTGTCGTGGCGCCTG
TGGATGCCCTGGATAGGCGCGGGATTGGCAATCTGCATAATGTGTATGGT
TGCGGTTCGAGGAGTAGCCCACGTGGGTCGCGTTGCCGGCTTGAGCTGTT
CGTGGGACCAGGGGTACATAGTGCCCATGGTGTCGGGGCGGTGGATTTTA
CCTGGTGTATCGGCTCTACCTACGGAGTATCCATGGTTCTTTGCCCGTCT
ATATTAGACTATGCTGTATGTTTTGGATGGATATGA
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