mRNA_P-fluviatile_contig85.14900.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig85.14900.1
Unique NamemRNA_P-fluviatile_contig85.14900.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig85.14900.1 vs. uniprot
Match: D7FSJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ1_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 1.390e-59
Identity = 119/157 (75.80%), Postives = 127/157 (80.89%), Query Frame = 3 
Query:  306 MELRQAITQRKRREERRYDKDNYAALLRTEVDGSGRTRRRRLHSGEGGDASGSAAGQAREMKQSLQRTRKMMAEQLARVAQVSEVMGEQDTLLMNTFAQHQASLQGIGGSLKRAGTTLTRLKAAEVMDTVIMVASTFIFIATVCFVVYQRVPLLGLL 776
            MELR+A+T RKR EERRYD  + AALL  E  G G  RR         D  GSAAG AREMKQSLQRTRKMMAEQLARVAQVSEVMGEQD LLMNTFA+HQ    GIGGSLKRAGTTLTRLKAAEVMDT+IMVASTF+F ATVCFV+YQR+PLLGLL
Sbjct:    1 MELRRAVTLRKRHEERRYDATSRAALLGAEG-GDGPRRRGYNSXXXXDDTPGSAAGDAREMKQSLQRTRKMMAEQLARVAQVSEVMGEQDALLMNTFAEHQ----GIGGSLKRAGTTLTRLKAAEVMDTIIMVASTFVFFATVCFVIYQRLPLLGLL 152
[Close]
BLAST of mRNA_P-fluviatile_contig85.14900.1 vs. uniprot
Match: A0A6H5JZD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZD2_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 2.720e-59
Identity = 133/204 (65.20%), Postives = 149/204 (73.04%), Query Frame = 3 
Query:   48 ALGHVDELLQELRLSIRRIEI-------NDRPWTRNAIELFNNESIRTVAACREALAEARNEAQQRE--------NETGGNDRTETLVEVVQAERELEHVRMELRQAITQRKRREERRYDKDNYAALLRTEVDGSGRTRRRRLHSGEGGD-ASGSAAGQAREMKQSLQRTRKMMAEQLARVAQVSEVMGEQDTLLMNTFAQHQA 611
            +L  V +LL+ELRLSIR+IE+        D  WTR+ IE FNN SIRTVAACR+AL EAR E +Q E           GG+D   +L +VVQAER+LEHVRMELR+A+T RKR EERRYD  N AALL  E  G G  RRR  +SG G D A GSAAG AREMKQSLQRTRKMMAEQLARVAQVSEVMGEQD LLMNTFA+HQA
Sbjct:    7 SLVRVYDLLRELRLSIRKIEVAAGTREGEDDAWTRHQIEAFNNASIRTVAACRDALTEARYEGEQHEAGXXXXXXXTDGGSD---SLAKVVQAERDLEHVRMELRRAVTLRKRHEERRYDATNRAALLGAEC-GDG-PRRRGYNSGGGSDDAPGSAAGDAREMKQSLQRTRKMMAEQLARVAQVSEVMGEQDALLMNTFAEHQA 205
[Close]
BLAST of mRNA_P-fluviatile_contig85.14900.1 vs. uniprot
Match: A0A835ZB28_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB28_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 6.020e-21
Identity = 85/253 (33.60%), Postives = 127/253 (50.20%), Query Frame = 3 
Query:   51 LGHVDELLQELRLSIRRIE----------INDRPWTR-NAIELFNNESIRTVAACREALAEARNEAQQRENETGGNDRTETLVEVVQAERELEHVRMELRQAITQRKRREERRYD-KDNYAALLRTEVDGSGRTRRRRLHSGEGGDASGSAAGQAREMKQSLQRTRKMMAEQLARVAQVSEVMGEQDTLLMNTFAQHQASLQGIGGSLKRAGTTLTRLKAAEVMDTVIMVASTFIFIATVCFVVYQRVPLLGL 773
            +   D LL++L   ++R+E          +++  W     ++ FN  +IR V  CREAL  A  EAQ                    A+ EL+ +R  LR A+ Q  R   +R D + ++      E DGSG             D S + A        SL R+R++MAEQ+AR++ V++++GEQD LL +T  +H+    G+GG++ RA   LTRL A  +MD V M AST +F A V +V++ RVP  GL
Sbjct:    4 IAEADRLLEDLSRRVKRLEAPAGDGTVATLSESSWQPPQDLQAFNKAAIRVVGQCREALEAASLEAQACST----------------AQNELDSLRTALRGALLQASRHVAQRRDARRDFLLAGAAEDDGSG-------------DQSAAVAS-------SLARSRRVMAEQVARMSSVAQLVGEQDQLLRDTAEEHK----GVGGTVGRASMLLTRLNAQAIMDAVAMAASTAMFFAAVLYVIWARVPGFGL 216
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig85.14900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FSJ1_ECTSI1.390e-5975.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZD2_9PHAE2.720e-5965.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZB28_9STRA6.020e-2133.60Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig85contigP-fluviatile_contig85:167888..170900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSec20
Ec32 orthologEc-11_003900.1
Exons5
Model size779
Cds size777
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig85.14900.1prot_P-fluviatile_contig85.14900.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig85 167890..170900 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817293.5282388-UTR-P-fluviatile_contig85:167887..1678891622817293.5282388-UTR-P-fluviatile_contig85:167887..167889Porterinema fluviatile SAG_2381UTRP-fluviatile_contig85 167888..167889 +
1693571964.972591-UTR-P-fluviatile_contig85:167887..1678891693571964.972591-UTR-P-fluviatile_contig85:167887..167889Porterinema fluviatile SAG_2381UTRP-fluviatile_contig85 167888..167889 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817293.5408895-CDS-P-fluviatile_contig85:167889..1680301622817293.5408895-CDS-P-fluviatile_contig85:167889..168030Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 167890..168030 +
1693571964.9845848-CDS-P-fluviatile_contig85:167889..1680301693571964.9845848-CDS-P-fluviatile_contig85:167889..168030Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 167890..168030 +
1622817293.553388-CDS-P-fluviatile_contig85:168325..1684511622817293.553388-CDS-P-fluviatile_contig85:168325..168451Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 168326..168451 +
1693571965.4646955-CDS-P-fluviatile_contig85:168325..1684511693571965.4646955-CDS-P-fluviatile_contig85:168325..168451Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 168326..168451 +
1622817293.5655997-CDS-P-fluviatile_contig85:169883..1700291622817293.5655997-CDS-P-fluviatile_contig85:169883..170029Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 169884..170029 +
1693571965.4798102-CDS-P-fluviatile_contig85:169883..1700291693571965.4798102-CDS-P-fluviatile_contig85:169883..170029Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 169884..170029 +
1622817293.577887-CDS-P-fluviatile_contig85:170244..1704461622817293.577887-CDS-P-fluviatile_contig85:170244..170446Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 170245..170446 +
1693571965.4920447-CDS-P-fluviatile_contig85:170244..1704461693571965.4920447-CDS-P-fluviatile_contig85:170244..170446Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 170245..170446 +
1622817293.5905907-CDS-P-fluviatile_contig85:170738..1709001622817293.5905907-CDS-P-fluviatile_contig85:170738..170900Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 170739..170900 +
1693571968.8017278-CDS-P-fluviatile_contig85:170738..1709001693571968.8017278-CDS-P-fluviatile_contig85:170738..170900Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 170739..170900 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig85.14900.1

>prot_P-fluviatile_contig85.14900.1 ID=prot_P-fluviatile_contig85.14900.1|Name=mRNA_P-fluviatile_contig85.14900.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=259bp
MLQPVCHVYLVMVGIALGHVDELLQELRLSIRRIEINDRPWTRNAIELFN
NESIRTVAACREALAEARNEAQQRENETGGNDRTETLVEVVQAERELEHV
RMELRQAITQRKRREERRYDKDNYAALLRTEVDGSGRTRRRRLHSGEGGD
ASGSAAGQAREMKQSLQRTRKMMAEQLARVAQVSEVMGEQDTLLMNTFAQ
HQASLQGIGGSLKRAGTTLTRLKAAEVMDTVIMVASTFIFIATVCFVVYQ
RVPLLGLL*
back to top

mRNA from alignment at P-fluviatile_contig85:167888..170900+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig85.14900.1 ID=mRNA_P-fluviatile_contig85.14900.1|Name=mRNA_P-fluviatile_contig85.14900.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3013bp|location=Sequence derived from alignment at P-fluviatile_contig85:167888..170900+ (Porterinema fluviatile SAG_2381)
CGATGCTGCAGCCGGTGTGTCACGTCTATCTCGTCATGGTAGGGATCGCT
CTTGGTCATGTTGACGAGCTCCTCCAAGAGCTCAGGCTAAGCATCCGCAG
GATTGAGATCAACGACAGGCCTTGGACAAGAAATGCAATCGAGGTGTGTG
TAATGGAAAGTACGTGCTGCGTATGACATAACGTATTCGGAGAGGGCAGA
GGTGTGCCACAGGGAGCACACAGAGCGCAAGAGTGGACCTCAGCTGGTGC
TGGGCCTGCGCTGGATCTTTGACCCTGTGTAAATGATGAACAGCAGTTTG
GTAAGGAAGTATAGCTGCCTAGCCTTGTCAGTTCAGCCATCCGCGAAGCC
TGATGCGTATCTCGCCGCCCCCCTGCGCGTGCGCCCGTTGTCTCGTGCCC
CCCGTTTCGTGGTCTACTTCTCGCGCTCTGCCGAGCAGCTGTTCAACAAC
GAGAGTATTCGTACCGTCGCCGCGTGTCGTGAGGCCTTGGCGGAGGCGAG
AAACGAGGCGCAACAGCGCGAGAACGAGACCGGTGGCAACGACAGGACCG
AAACGCTTGTAGAGGTGTGATGATCTGGCGCACACAGCAGGCATGCGTTG
AGTACAGACGTCTAGCCATTCCCACAGTCAATGTTTACACCACACAACGC
CCTCTATGGAGGAAGAAAAGCAGGACGAATCGACTCATCGAGTGGCTAGT
CAAGATGCAGCCTTGATGGGAAAATAACAGGTTGTAGGCGCAGCAACCCC
TGGAAGGCTCGTACATTGCCATCGGCTGCTTTGCCTGGAACTCGTGTGCA
AGAGTGCGCATGGATCACAGTCCAGCACACGCCTACCCCCTCCCTCCTCC
CCTAATCCTATTGGAATAGAACAGTCAGCATCACGGAAGAAGTTGTGAGT
TCAGTCCTGTTGTCATGCACGAGTTGGAAATTGGAGGCCTGGAAATGGTG
TGGCCGGGCAGACTAGCTTCTTCACACTGTCGATATTGGGTTGGAAATGG
TCAGAACGCACATTATCACTGAGTGCTCGCCTCACAGACGTCCGTTGGCT
ATGCGAATTCGGAGGCTTTGCACTTCACTGCTGTGAGCTTGTCGGAGCAA
AGGCGGGGCAGCAGGAGCGGAGAGTGGGCTAGCAAGCTCGAAAAGTGACC
TAGAGCGTTTGACCCACGCTGCACTTCTGGTGCCCAAAACTTTGCTTCGA
GACTCAAAACAGTGAAGTGTGCAGCCTCGAGGGTTGAGTGGCAAGTGTAC
ATCTGTAAGGCGAGCATTCTGTGACCATGTTGGTTCGGACCATTTCCTAC
ACGGACTCGGGATATGGAAGAAGCCAGTCTGCGAGGCCCCGTCATTTCCA
TTCCTCCTATTTTTAGCTGTTCTACTACTGCCCTCATCCATTTTCTCTTT
CCTACAGGAAAAAAAACTGGGTGTTCCGTCCAGGATTGTGTTTAGTGTCC
TCTCCCCGCTGCAGGAACGGTGTGGGGGATTGAATCAGACGTCACCGGGG
AAGAACTTCAAAGCGTTTGGTGCGCCCACCCCCGCCTCCACCCAACGTCA
AGCATACCACAGTTGGGGCACTGCTGGTTTGCCCCGTCTTAGCTTTGCCT
GTGGAAAGAGCCTGATTTTTTTGTGCGCGACGAACTGAATCGTCTAAGAA
CAGGCCTGATAAATATCGGTACCATGGTGCAATCAGTAATCGATGTGGAT
TAGGGAATGGGGTCGTCCCAATTGCTCGAATACACACGCGCACCAGCAGA
GGCATTACCTGGTCTTCCGCAGACCGCCGACCACCCGCGGATCCTTCCAA
GGTGGACTTGCCACCTCTGCGAAAGATGCGGGGTTGTGATTCCGAGATAA
GTGCACGATCGCCCCCCTGTAGATCACTCTTATTGTATACCCGACGCTGA
TGAAGCTTCGCTTGTTCCATTGAACGCCCATTTCCATTGAGGTTCAATGC
CAAATGTTCTTGTCTGTGCGACGGCGGGAATTGGATTGGATGGAAGGTCG
TGCAAGCCGAGAGAGAGCTGGAGCACGTGAGGATGGAGCTGCGGCAAGCA
ATAACCCAAAGAAAGCGCCGCGAGGAGAGGCGCTACGACAAGGACAATTA
TGCAGCGCTGCTGAGGACAGAGGTCGACGGCAGTGGCCGCACGTGAGATC
ATTTCGTGAATCAACTTTGTTTCTCTCTTTCACCCATTCTCCGATGTTTG
GACGCGATGATGACGTATGCGCCATCGAAGCTTTCTCGGTATCTCGGAGC
TCGCCTACCACCCAGCTTCGCGTGGGCTCTCGTACATTAGCGATTTTCGC
TACGCAGCCGTAAGCTTTTATTGCTTGTCATCATTCCCCCCCGCTTTTCC
TCAAAAGAAGACGGCGGAGATTGCACTCGGGCGAAGGCGGCGACGCATCG
GGGTCAGCGGCGGGACAGGCGCGAGAGATGAAGCAGTCGTTACAGCGCAC
TCGAAAAATGATGGCGGAGCAGCTGGCGAGGGTGGCGCAAGTATCGGAAG
TTATGGGCGAACAAGATACACTGCTTATGAATACATTCGCTCAACACCAG
GCGAGTCTTGTCGGCCCAGAGCATGGTGTTTCCATCTGCCGCTTGAAGTG
GCCGCTGCACATCGACGGGGTACCGGCTGTCTCTCTGTTGTGAAGTTGTG
TAGACATCTGGTTGCTGCCTCCACTTGCATGTAGAGCAGCCAGCCCACAA
CCGCAACCTGTAAGCTCATCCCTCTGCAGTAGACTCCACTTGCATGGCAG
CTGGAATCAATCAGAACGGAGATTAACCTCAAAACTTGCCGTTTCCTAGG
GCTGACTTTTGCCCCGCTCCCCTATGTCATGAACCATTTGTGCGGTGCAA
GCAGGGCATCGGGGGGAGTTTGAAGCGAGCGGGCACAACTTTGACGCGCC
TCAAGGCGGCCGAAGTGATGGATACTGTCATCATGGTGGCGTCTACCTTC
ATTTTCATCGCGACGGTGTGCTTTGTAGTGTACCAGAGGGTGCCCCTGCT
GGGTCTGTTATAA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig85:167888..170900+

>mRNA_P-fluviatile_contig85.14900.1 ID=mRNA_P-fluviatile_contig85.14900.1|Name=mRNA_P-fluviatile_contig85.14900.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1554bp|location=Sequence derived from alignment at P-fluviatile_contig85:167888..170900+ (Porterinema fluviatile SAG_2381)
ATGCTGCAGCCGGTGTGTCACGTCTATCTCGTCATGGTAGGGATCGCTCT
TGGTCATGTTGACGAGCTCCTCCAAGAGCTCAGGCTAAGCATCCGCAGGA
TTGAGATCAACGACAGGCCTTGGACAAGAAATGCAATCGAGATGCTGCAG
CCGGTGTGTCACGTCTATCTCGTCATGGTAGGGATCGCTCTTGGTCATGT
TGACGAGCTCCTCCAAGAGCTCAGGCTAAGCATCCGCAGGATTGAGATCA
ACGACAGGCCTTGGACAAGAAATGCAATCGAGCTGTTCAACAACGAGAGT
ATTCGTACCGTCGCCGCGTGTCGTGAGGCCTTGGCGGAGGCGAGAAACGA
GGCGCAACAGCGCGAGAACGAGACCGGTGGCAACGACAGGACCGAAACGC
TTGTAGAGCTGTTCAACAACGAGAGTATTCGTACCGTCGCCGCGTGTCGT
GAGGCCTTGGCGGAGGCGAGAAACGAGGCGCAACAGCGCGAGAACGAGAC
CGGTGGCAACGACAGGACCGAAACGCTTGTAGAGGTCGTGCAAGCCGAGA
GAGAGCTGGAGCACGTGAGGATGGAGCTGCGGCAAGCAATAACCCAAAGA
AAGCGCCGCGAGGAGAGGCGCTACGACAAGGACAATTATGCAGCGCTGCT
GAGGACAGAGGTCGACGGCAGTGGCCGCACGTCGTGCAAGCCGAGAGAGA
GCTGGAGCACGTGAGGATGGAGCTGCGGCAAGCAATAACCCAAAGAAAGC
GCCGCGAGGAGAGGCGCTACGACAAGGACAATTATGCAGCGCTGCTGAGG
ACAGAGGTCGACGGCAGTGGCCGCACAAGACGGCGGAGATTGCACTCGGG
CGAAGGCGGCGACGCATCGGGGTCAGCGGCGGGACAGGCGCGAGAGATGA
AGCAGTCGTTACAGCGCACTCGAAAAATGATGGCGGAGCAGCTGGCGAGG
GTGGCGCAAGTATCGGAAGTTATGGGCGAACAAGATACACTGCTTATGAA
TACATTCGCTCAACACCAGGCGAGTCTTAAGACGGCGGAGATTGCACTCG
GGCGAAGGCGGCGACGCATCGGGGTCAGCGGCGGGACAGGCGCGAGAGAT
GAAGCAGTCGTTACAGCGCACTCGAAAAATGATGGCGGAGCAGCTGGCGA
GGGTGGCGCAAGTATCGGAAGTTATGGGCGAACAAGATACACTGCTTATG
AATACATTCGCTCAACACCAGGCGAGTCTTCAGGGCATCGGGGGGAGTTT
GAAGCGAGCGGGCACAACTTTGACGCGCCTCAAGGCGGCCGAAGTGATGG
ATACTGTCATCATGGTGGCGTCTACCTTCATTTTCATCGCGACGGTGTGC
TTTGTAGTGTACCAGAGGGTGCCCCTGCTGGGTCTGTTATAACAGGGCAT
CGGGGGGAGTTTGAAGCGAGCGGGCACAACTTTGACGCGCCTCAAGGCGG
CCGAAGTGATGGATACTGTCATCATGGTGGCGTCTACCTTCATTTTCATC
GCGACGGTGTGCTTTGTAGTGTACCAGAGGGTGCCCCTGCTGGGTCTGTT
ATAA
back to top