mRNA_P-fluviatile_contig85.14896.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig85.14896.1
Unique NamemRNA_P-fluviatile_contig85.14896.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig85.14896.1 vs. uniprot
Match: A0A6H5L6R8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R8_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 7.910e-34
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 2 
Query:    2 SELGNGNYTVCFDATPYRCECFAIGLRFIDQKGQVVQHVLKIAMLKKSMSARDIVGQVNDTLGEEF 199
            SELGNGNYTVCFDATPYRCECF IGLRFI+Q GQVVQ VLKIAMLKKSMSARDIVGQVNDTLGEEF
Sbjct:   77 SELGNGNYTVCFDATPYRCECFGIGLRFINQNGQVVQRVLKIAMLKKSMSARDIVGQVNDTLGEEF 142
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BLAST of mRNA_P-fluviatile_contig85.14896.1 vs. uniprot
Match: A0A6H5JN03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN03_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 6.910e-32
Identity = 59/66 (89.39%), Postives = 60/66 (90.91%), Query Frame = 2 
Query:    2 SELGNGNYTVCFDATPYRCECFAIGLRFIDQKGQVVQHVLKIAMLKKSMSARDIVGQVNDTLGEEF 199
            SELG+GNYTVCFD TPYRCECF I LRFIDQKGQVVQHVLKI ML KSMSARDIVGQVNDTL EEF
Sbjct:   77 SELGDGNYTVCFDPTPYRCECFGIELRFIDQKGQVVQHVLKIEMLTKSMSARDIVGQVNDTLSEEF 142
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BLAST of mRNA_P-fluviatile_contig85.14896.1 vs. uniprot
Match: A0A6H5JX99_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX99_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.620e-18
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 2 
Query:    5 ELGNGNYTVCFDATPYRCECFAIGLRFIDQKGQVVQHVLKIAMLKKSMSARDIVGQVNDTLGEEF 199
            ELG+GNYTVCFD TPYRCECF IG+RFIDQ GQ+   +L ++ML  SM  +DI G+++  +  E+
Sbjct:  267 ELGDGNYTVCFDGTPYRCECFGIGIRFIDQTGQICPRLLWLSMLANSMDYQDIYGEIHKVVFMEY 331
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BLAST of mRNA_P-fluviatile_contig85.14896.1 vs. uniprot
Match: A0A6H5KPH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPH4_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.540e-18
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 2 
Query:    5 ELGNGNYTVCFDATPYRCECFAIGLRFIDQKGQVVQHVLKIAMLKKSMSARDIVGQVNDTLGEEF 199
            ELG+GNYTVCFD T YRCECF IG+RFIDQ GQ+ Q +L ++ML  SM  +DI G+++  +  E+
Sbjct:   85 ELGDGNYTVCFDGTLYRCECFGIGIRFIDQTGQICQPLLWLSMLANSMDYQDIYGEIHKVVFMEY 149
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BLAST of mRNA_P-fluviatile_contig85.14896.1 vs. uniprot
Match: A0A6H5JD81_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD81_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.590e-18
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 2 
Query:    5 ELGNGNYTVCFDATPYRCECFAIGLRFIDQKGQVVQHVLKIAMLKKSMSARDIVGQVNDTLGEEF 199
            E+G+  Y +CFDATPY CECF +G+RFI   GQV Q VL+++MLKKSM+A DI G+VN  +  E+
Sbjct:  246 EIGDRPYALCFDATPYLCECFGVGVRFIGSSGQVAQRVLRLSMLKKSMTASDIAGEVNRIVTHEY 310
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BLAST of mRNA_P-fluviatile_contig85.14896.1 vs. uniprot
Match: A0A6H5KTX0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTX0_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.600e-18
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 2 
Query:    5 ELGNGNYTVCFDATPYRCECFAIGLRFIDQKGQVVQHVLKIAMLKKSMSARDIVGQVNDTLGEEF 199
            E+G+  Y +CFDATPY CECF +G+RFI   GQV Q VL+++MLKKSM+A DI G+VN  +  E+
Sbjct:  343 EIGDRPYALCFDATPYLCECFGVGVRFIGSSGQVAQRVLRLSMLKKSMTASDIAGEVNRIVTHEY 407
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BLAST of mRNA_P-fluviatile_contig85.14896.1 vs. uniprot
Match: A0A6H5KX97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX97_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.440e-16
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 2 
Query:    2 SELGNGNYTVCFDATPYRCECFAIGLRFIDQKGQVVQ 112
            SELGNGNYTVCFDATPYR ECF IGLRFIDQKGQ+ Q
Sbjct:   70 SELGNGNYTVCFDATPYRYECFGIGLRFIDQKGQIAQ 106
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BLAST of mRNA_P-fluviatile_contig85.14896.1 vs. uniprot
Match: A0A6H5JIR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR3_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.830e-16
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 2 
Query:    5 ELGNGNYTVCFDATPYRCECFAIGLRFIDQKGQVVQHVLKIAMLKKSMSARDIVGQVNDTLGEEF 199
            ELG+G YTVCFD TPYRCECF IG+RFI   GQ+ Q +L ++ML  SM  + I G++N  +  E+
Sbjct:  306 ELGDGTYTVCFDGTPYRCECFGIGIRFIGPDGQICQRLLGLSMLANSMDYKAIFGELNKVVFMEY 370
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BLAST of mRNA_P-fluviatile_contig85.14896.1 vs. uniprot
Match: A0A6H5KX52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX52_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.620e-14
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 2 
Query:    5 ELGNGNYTVCFDATPYRCECFAIGLRFIDQKGQVVQHVLKIAMLKKSMSARDIVGQVNDTLGEEF 199
            E+G+    +CFDATPY CE F +G+RFI+  GQV Q VL+++MLKKSM+A DI G+V   +  E+
Sbjct:   93 EMGDRPNALCFDATPYLCEWFRVGVRFINASGQVAQRVLRLSMLKKSMTADDIAGEVTRIVTHEY 157
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig85.14896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5L6R8_9PHAE7.910e-3493.94Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JN03_9PHAE6.910e-3289.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX99_9PHAE1.620e-1856.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPH4_9PHAE3.540e-1856.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD81_9PHAE3.590e-1856.92Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTX0_9PHAE3.600e-1856.92Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX97_9PHAE2.440e-1689.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIR3_9PHAE2.830e-1653.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX52_9PHAE1.620e-1452.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig85contigP-fluviatile_contig85:119285..119699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size202
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817291.7686188-CDS-P-fluviatile_contig85:119284..1193821622817291.7686188-CDS-P-fluviatile_contig85:119284..119382Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 119285..119382 -
1693571960.3375266-CDS-P-fluviatile_contig85:119284..1193821693571960.3375266-CDS-P-fluviatile_contig85:119284..119382Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 119285..119382 -
1622817291.779808-CDS-P-fluviatile_contig85:119596..1196991622817291.779808-CDS-P-fluviatile_contig85:119596..119699Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 119597..119699 -
1693571960.3466551-CDS-P-fluviatile_contig85:119596..1196991693571960.3466551-CDS-P-fluviatile_contig85:119596..119699Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 119597..119699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig85.14896.1prot_P-fluviatile_contig85.14896.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig85 119285..119699 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig85.14896.1

>prot_P-fluviatile_contig85.14896.1 ID=prot_P-fluviatile_contig85.14896.1|Name=mRNA_P-fluviatile_contig85.14896.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=67bp
VGAWERELHGVLRRHALPLRVLRHRATIHRPERPGGAACPQDCDAEEVYV
GSRHRRPGQRHLGRRV*
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mRNA from alignment at P-fluviatile_contig85:119285..119699-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig85.14896.1 ID=mRNA_P-fluviatile_contig85.14896.1|Name=mRNA_P-fluviatile_contig85.14896.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=415bp|location=Sequence derived from alignment at P-fluviatile_contig85:119285..119699- (Porterinema fluviatile SAG_2381)
GTCGGAGCTTGGGAACGGGAATTACACGGTGTGCTTCGACGCCACGCCCT
ACCGTTGCGAGTGCTTCGCCATCGGGCTACGATTCATCGACCAGAAAGGC
CAGGTACAGAAAATGATTGCGTTCAATTTTACACACCGCCGCACCGTTAT
CGCATGCATACGCCGAGTACAGCAGTCAGCAGATCGCACCAGCACAAAAG
AGCAAGGTTTCATCGGTGCTTTTCAATCTCACTCTCAATTATTATCTCAC
GACGTCATCCCCGGCCCCTCCCCCCGCTCCCCACCACTCCACGCTCTCCC
TCGTTTCCTGGCAGCAGGTGGTGCAGCATGTCCTCAAGATTGCGATGCTG
AAGAAGTCTATGTCGGCTCGAGACATCGTCGGCCAGGTCAACGACACCTT
GGGCGAAGAGTTTAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig85:119285..119699-

>mRNA_P-fluviatile_contig85.14896.1 ID=mRNA_P-fluviatile_contig85.14896.1|Name=mRNA_P-fluviatile_contig85.14896.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=402bp|location=Sequence derived from alignment at P-fluviatile_contig85:119285..119699- (Porterinema fluviatile SAG_2381)
GTCGGAGCTTGGGAACGGGAATTACACGGTGTGCTTCGACGCCACGCCCT
ACCGTTGCGAGTGCTTCGCCATCGGGCTACGATTCATCGACCAGAAAGGC
CAGGTCGGAGCTTGGGAACGGGAATTACACGGTGTGCTTCGACGCCACGC
CCTACCGTTGCGAGTGCTTCGCCATCGGGCTACGATTCATCGACCAGAAA
GGCCAGGTGGTGCAGCATGTCCTCAAGATTGCGATGCTGAAGAAGTCTAT
GTCGGCTCGAGACATCGTCGGCCAGGTCAACGACACCTTGGGCGAAGAGT
TTAAGTGGTGCAGCATGTCCTCAAGATTGCGATGCTGAAGAAGTCTATGT
CGGCTCGAGACATCGTCGGCCAGGTCAACGACACCTTGGGCGAAGAGTTT
AA
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