mRNA_P-fluviatile_contig85.14894.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig85.14894.1
Unique NamemRNA_P-fluviatile_contig85.14894.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig85.14894.1 vs. uniprot
Match: A0A6H5L3U5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3U5_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 8.690e-38
Identity = 67/75 (89.33%), Postives = 69/75 (92.00%), Query Frame = 1 
Query:    1 SNVRDHCRSHRHTVRLALVTTKKAEDEGTLRAFGIISKAKGGMYGDTPSDRDKLLQLKLVAGCLSAGIPLHALAD 225
            SNVRDHCRSHRHTVRLA    KKAEDEGTLRAFGI+SKAKGGMYGDT SDRDKLLQ+KLVAGCLSAGIPLHAL D
Sbjct:  207 SNVRDHCRSHRHTVRLAAEPAKKAEDEGTLRAFGIMSKAKGGMYGDTLSDRDKLLQVKLVAGCLSAGIPLHALED 281
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BLAST of mRNA_P-fluviatile_contig85.14894.1 vs. uniprot
Match: A0A6H5L6R8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R8_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.350e-14
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:  106 ISKAKGGMYGDTPSDRDKLLQLKLVAGCLSAGIPLHALAD 225
            +SKAKGGMYGDT SDRDKLLQ+KLVAGCLSAGIPLHAL D
Sbjct:    1 MSKAKGGMYGDTLSDRDKLLQVKLVAGCLSAGIPLHALED 40
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BLAST of mRNA_P-fluviatile_contig85.14894.1 vs. uniprot
Match: A0A6H5KX97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX97_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.220e-11
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:  127 MYGDTPSDRDKLLQLKLVAGCLSAGIPLHALAD 225
            MYGDT SDRDK LQ+KLVAGCLSAGIPLHALAD
Sbjct:    1 MYGDTLSDRDKFLQVKLVAGCLSAGIPLHALAD 33
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BLAST of mRNA_P-fluviatile_contig85.14894.1 vs. uniprot
Match: A0A6H5JGW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW7_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 2.670e-10
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:  127 MYGDTPSDRDKLLQLKLVAGCLSAGIPLHALAD 225
            MYGDT SDRDK LQ+KLVAGCLSAGIPLHALAD
Sbjct:    1 MYGDTLSDRDKFLQVKLVAGCLSAGIPLHALAD 33
[Close]
BLAST of mRNA_P-fluviatile_contig85.14894.1 vs. uniprot
Match: A0A6H5JN03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN03_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 3.280e-9
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:  106 ISKAKGGMYGDTPSDRDKLLQLKLVAGCLSAGIPLHALAD 225
            +S  K G YGDT S+RDKLLQ+KL  GCLSAGIPLHAL D
Sbjct:    1 MSTDKEGWYGDTLSNRDKLLQVKLATGCLSAGIPLHALGD 40
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig85.14894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L3U5_9PHAE8.690e-3889.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6R8_9PHAE2.350e-1490.00Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5KX97_9PHAE1.220e-1190.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGW7_9PHAE2.670e-1090.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN03_9PHAE3.280e-972.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig85contigP-fluviatile_contig85:116181..116759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size229
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817291.6773064-CDS-P-fluviatile_contig85:116180..1162611622817291.6773064-CDS-P-fluviatile_contig85:116180..116261Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 116181..116261 +
1693571960.2937112-CDS-P-fluviatile_contig85:116180..1162611693571960.2937112-CDS-P-fluviatile_contig85:116180..116261Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 116181..116261 +
1622817291.687834-CDS-P-fluviatile_contig85:116613..1167571622817291.687834-CDS-P-fluviatile_contig85:116613..116757Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 116614..116757 +
1693571960.3080392-CDS-P-fluviatile_contig85:116613..1167571693571960.3080392-CDS-P-fluviatile_contig85:116613..116757Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 116614..116757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig85.14894.1prot_P-fluviatile_contig85.14894.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig85 116181..116757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig85.14894.1

>prot_P-fluviatile_contig85.14894.1 ID=prot_P-fluviatile_contig85.14894.1|Name=mRNA_P-fluviatile_contig85.14894.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=75bp
SNVRDHCRSHRHTVRLALVTTKKAEDEGTLRAFGIISKAKGGMYGDTPSD
RDKLLQLKLVAGCLSAGIPLHALAD
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mRNA from alignment at P-fluviatile_contig85:116181..116759+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig85.14894.1 ID=mRNA_P-fluviatile_contig85.14894.1|Name=mRNA_P-fluviatile_contig85.14894.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=579bp|location=Sequence derived from alignment at P-fluviatile_contig85:116181..116759+ (Porterinema fluviatile SAG_2381)
AGCAACGTCAGGGACCACTGCAGGAGCCACAGGCATACGGTGCGGCTGGC
CCTAGTGACAACGAAGAAGGCTGAGGACGAGGTGAGAGGGAGTCTATGAG
TCTATTCATTGTCATCTGATACTTAAAATTTTGTATTTTAAAATTTTTAG
AATTTCTAGGGTACTCGGTACTCGGTTATAGTTTTAATCAATACTTCGTA
TTTTGTACATGCCTAAGAAGTATCGTTGTATCGTTGTGCGTTGGTCTCGT
ATGCTGTTGTGTATTCCTGCAGTGCAGTGTGTCGCCTGCTGATCCGTGTT
CCGTGTTAGTGTCGACAAATGCATTTCCCGTAAAGAACAACACAAAAACA
TACCTGGTGATAACATACAAAGGACCACACACAGCACTTTTCGCCCTTGT
CCTACTGCCTTGCCGACACTCGTAATATTGCAGGGCACGCTGCGTGCCTT
CGGAATCATATCGAAAGCCAAGGGGGGCATGTACGGTGACACCCCGAGTG
ACCGTGACAAGCTCCTGCAGTTGAAGTTGGTGGCTGGATGTTTGTCGGCA
GGCATCCCGCTTCATGCCCTTGCCGACCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig85:116181..116759+

>mRNA_P-fluviatile_contig85.14894.1 ID=mRNA_P-fluviatile_contig85.14894.1|Name=mRNA_P-fluviatile_contig85.14894.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=450bp|location=Sequence derived from alignment at P-fluviatile_contig85:116181..116759+ (Porterinema fluviatile SAG_2381)
AGCAACGTCAGGGACCACTGCAGGAGCCACAGGCATACGGTGCGGCTGGC
CCTAGTGACAACGAAGAAGGCTGAGGACGAGAGCAACGTCAGGGACCACT
GCAGGAGCCACAGGCATACGGTGCGGCTGGCCCTAGTGACAACGAAGAAG
GCTGAGGACGAGGGCACGCTGCGTGCCTTCGGAATCATATCGAAAGCCAA
GGGGGGCATGTACGGTGACACCCCGAGTGACCGTGACAAGCTCCTGCAGT
TGAAGTTGGTGGCTGGATGTTTGTCGGCAGGCATCCCGCTTCATGCCCTT
GCCGACGGCACGCTGCGTGCCTTCGGAATCATATCGAAAGCCAAGGGGGG
CATGTACGGTGACACCCCGAGTGACCGTGACAAGCTCCTGCAGTTGAAGT
TGGTGGCTGGATGTTTGTCGGCAGGCATCCCGCTTCATGCCCTTGCCGAC
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