mRNA_P-fluviatile_contig85.14893.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig85.14893.1
Unique NamemRNA_P-fluviatile_contig85.14893.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig85.14893.1 vs. uniprot
Match: D7G235_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G235_ECTSI)

HSP 1 Score: 317 bits (811), Expect = 6.590e-101
Identity = 174/281 (61.92%), Postives = 193/281 (68.68%), Query Frame = 2 
Query:  308 MTTTSWD-AGETKASEIRWKGRNHLNFEVGRCRLRALPVVIHILPEDIDWFSSDSSLFDELKLLLRDRVISATGNGDKDPEATKSRKRARKEELCVQGERLQFTYRYRKTLPRYTVLSYADDSTQNPKNSSSSIGTSDSRTSAGSGKSNHPGSNSGSGSCGPEFRHLPLSESTLLVWVYRFDRDDPYRPVPNEAALHFAQLPPT-----KQVLDVEAVGRRFGDGAGATVGVQGGPRDTGLLAWLWAGDTXXXXXXXXXXXXXXXXGVRQHFIGGTLWRGR 1132
            M + SWD   ET AS +RW+GR  +NF  GR RLR LPVVIHILP+DI WFS+D+SLFDELKLLLR+RVISATGNGDKD EA KSRKRARKEE+C+QGERLQFTYRYRKTLPRYTVLSY  D  +     SSS G+S  +   GS                P FRHLPLSESTLLVWVY FD+DDPYRPVPNEAAL FA    T     ++ LDVEA+GRR G G GATV VQGGPRDTGLL WLW                    GVRQHFIG   W+G+
Sbjct:    1 MASVSWDDEEETAASNVRWQGRTLINFVAGRSRLRTLPVVIHILPKDIGWFSADASLFDELKLLLRERVISATGNGDKDAEAPKSRKRARKEEVCIQGERLQFTYRYRKTLPRYTVLSYTGDDIERANRGSSSAGSSKGKRCVGSNSXXXXX-------XXPAFRHLPLSESTLLVWVYPFDKDDPYRPVPNEAALQFASSTSTPAAADQEALDVEAIGRRSGAGTGATVDVQGGPRDTGLLTWLWG----VGGEGGGSAAGGVKGGVRQHFIGSASWQGK 270
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BLAST of mRNA_P-fluviatile_contig85.14893.1 vs. uniprot
Match: A0A836CBI6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI6_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.400e-22
Identity = 66/201 (32.84%), Postives = 110/201 (54.73%), Query Frame = 2 
Query:  326 DAGETKASEIRWKGRNHLNFEVGRCRLRAL-PVVIHILPEDIDWFSSDSS-LFDELKLLLRDRVIS------ATGNGDKDPEATK-----SRKRARKEELCVQGERLQFTYRYRKTLPRYTVLSY--ADDSTQNPKNSSSSIGTSDSRTSAGSGKSNHPGSNSGSGSCGPEFRHLPLSESTLLVWVYRFDRDDPYRPVPNE 883
            DA    +    W+ RN +N  +G  R + + P+V+H+LP+D+ W+++ S  L++EL+ LL+D+VI+      +   GD++ E +      SR++AR+ E CVQGE LQFT+R+R T P Y+++++     +TQ  + +S                              P +  LPL+E+TLL WV++FD  +PY P+P E
Sbjct:    8 DAQAAVSVSRAWQPRNCINLLIGDARRKQIMPLVVHLLPQDLAWWNASSDKLWEELQRLLKDQVITPYLATPSAVTGDEEEEKSTDAISTSRRKARRGEKCVQGEGLQFTFRFRPTKPVYSIITFNSVPAATQQQQTASKQAA--------------------------PAYASLPLNEATLLAWVFKFDPANPYAPLPTE 182
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig85.14893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G235_ECTSI6.590e-10161.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBI6_9STRA1.400e-2232.84Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig85contigP-fluviatile_contig85:100892..103410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_003670.1
Exons3
Model size1705
Cds size978
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig85.14893.1prot_P-fluviatile_contig85.14893.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig85 101199..102990 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817292.7242672-UTR-P-fluviatile_contig85:100891..1011981622817292.7242672-UTR-P-fluviatile_contig85:100891..101198Porterinema fluviatile SAG_2381UTRP-fluviatile_contig85 100892..101198 +
1693571964.3305347-UTR-P-fluviatile_contig85:100891..1011981693571964.3305347-UTR-P-fluviatile_contig85:100891..101198Porterinema fluviatile SAG_2381UTRP-fluviatile_contig85 100892..101198 +
1622817292.8461552-UTR-P-fluviatile_contig85:102990..1034101622817292.8461552-UTR-P-fluviatile_contig85:102990..103410Porterinema fluviatile SAG_2381UTRP-fluviatile_contig85 102991..103410 +
1693571964.3755047-UTR-P-fluviatile_contig85:102990..1034101693571964.3755047-UTR-P-fluviatile_contig85:102990..103410Porterinema fluviatile SAG_2381UTRP-fluviatile_contig85 102991..103410 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817292.7733102-CDS-P-fluviatile_contig85:101198..1013541622817292.7733102-CDS-P-fluviatile_contig85:101198..101354Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 101199..101354 +
1693571964.344963-CDS-P-fluviatile_contig85:101198..1013541693571964.344963-CDS-P-fluviatile_contig85:101198..101354Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 101199..101354 +
1622817292.7877529-CDS-P-fluviatile_contig85:101677..1018561622817292.7877529-CDS-P-fluviatile_contig85:101677..101856Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 101678..101856 +
1693571964.3584354-CDS-P-fluviatile_contig85:101677..1018561693571964.3584354-CDS-P-fluviatile_contig85:101677..101856Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 101678..101856 +
1622817292.8030427-CDS-P-fluviatile_contig85:102347..1029901622817292.8030427-CDS-P-fluviatile_contig85:102347..102990Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 102348..102990 +
1693571964.3670595-CDS-P-fluviatile_contig85:102347..1029901693571964.3670595-CDS-P-fluviatile_contig85:102347..102990Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 102348..102990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig85.14893.1

>prot_P-fluviatile_contig85.14893.1 ID=prot_P-fluviatile_contig85.14893.1|Name=mRNA_P-fluviatile_contig85.14893.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=326bp
MTTTSWDAGETKASEIRWKGRNHLNFEVGRCRLRALPVVIHILPEDIDWF
SSDSSLFDELKLLLRDRVISATGNGDKDPEATKSRKRARKEELCVQGERL
QFTYRYRKTLPRYTVLSYADDSTQNPKNSSSSIGTSDSRTSAGSGKSNHP
GSNSGSGSCGPEFRHLPLSESTLLVWVYRFDRDDPYRPVPNEAALHFAQL
PPTKQVLDVEAVGRRFGDGAGATVGVQGGPRDTGLLAWLWAGDTWSGGSG
SGTGGAGHGGGVRQHFIGGTLWRGRLLRVERGRRRTTTTTIYNGPSPCLW
RRRRDRPRVLQAKHEVSNRFRVERY*
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mRNA from alignment at P-fluviatile_contig85:100892..103410+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig85.14893.1 ID=mRNA_P-fluviatile_contig85.14893.1|Name=mRNA_P-fluviatile_contig85.14893.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2519bp|location=Sequence derived from alignment at P-fluviatile_contig85:100892..103410+ (Porterinema fluviatile SAG_2381)
GAAAAATAAAGGGACAAGGGACACTCACCCGCTCGAACTTACGAGCGCGG
CACGATGTACCTCGCTTCGGAGAGACGACAGGGTTCTAGGAGGTCTGTCT
GAGACAGAACCAGGCTACAGGGTGACGGTGCGCGGGCTGGCGGGGTGCGG
AGATTGAGTGACGCGGGAGGCGCAGAGACACAGGAAAACGGAAGGCTACC
ACTCTGCTCTTTTGCATTGCTTTCGGCGACAAAATTGTTGCCTCCAGGTT
GTCCCCGTCCCTCTCTCCTGGGCGCTGCTCACCCTCGTTAGGGCGGCTTC
ACCATCTATGACAACTACATCATGGGACGCTGGGGAAACCAAGGCTTCTG
AAATCAGATGGAAGGGAAGGAACCATCTGAATTTCGAAGTAGGCCGGTGC
AGACTTCGCGCCCTCCCTGTCGTGATTCATATTCTTCCAGAGGACATCGA
CTGGTTCTCATCGGTGAGAGGGTAAGAGACAAAGAGTCGCTTCAGAGGTA
CTGACAGGCAGAAGGACAGACAAGCAGACCGAGACAGACAGACTGACAGG
CAAGCAGACAAACAAAATATATCGATAAAGAGAGCAGGAGGCGACGGAGG
ATCAGAGAAAGGGGCATGCATCCCATTCATATCTGGCGCGTTCCGGCCGG
CATTACACATGTATTTGTGCGTCATGACTGCGTTTCGTGTTCGACTTACA
GACAGATGGTGTGTGTGGATGGGGCTTGCTGCGACAAGCTCCACCTTTTC
AGTTTCTGCCCCCCCTGTTCCCAATCGATGTTCCAGGATTCGTCGCTTTT
TGACGAGCTCAAGCTGCTGCTGCGAGATCGTGTGATCTCGGCCACTGGCA
ACGGCGACAAGGACCCCGAGGCGACGAAGTCACGGAAGCGCGCCCGAAAG
GAGGAGCTGTGCGTGCAGGGCGAACGGCTCCAGTTCACCTATCGCTACCG
GAAGACCTTACCCAGGTACCCCAAACGAGGACTACCGACAAACGCGGGCA
CCACCTGGCGTCGGCGCATGGCCCTGAAAACACCATCTCGCTACCTCGAT
GCGTCGGGGTAGCTAAGTGGCAACCCCGCGGTGCACAGTGAAGACCTCGC
CGGTAGCGTCTCATGCCTACCTTCAGCAGCAACGACAATTTTTCGGCGAC
ACTCTTCATCGCATGTGCTCGAAAGAGCTTACTCTGAACGGGCCAGAGGC
GCATGTAACCTCCAAAAGACTTCACCGTGTATCGCGTGCGTGGGGTGGGC
TTGACGCGCAAGAAAGAATTGGCCTTGTGGAGATTTGTCTAGTTCCGTGT
CGTTTTTGCGGGCGAATGCGCCCAATCTCTTCAAGCTCGAAAGCACATAG
CTGGTACTGTGCCTCGCCTAAGGGGCACGTGTCCTTGTCAATGCTATTTT
ACACCACTGTTGATTTCCTCTCAGCGTCCAAAGCATCCGTCTCGGCCTCG
TTATAGGTACACCGTGCTCTCCTACGCCGACGATAGTACGCAAAATCCTA
AGAACAGCAGCAGCAGCATCGGCACCAGCGACAGCCGCACTTCCGCGGGG
AGTGGTAAGAGCAACCATCCTGGCAGCAACAGCGGCAGCGGCAGCTGCGG
ACCAGAGTTCCGGCATTTACCCCTGTCGGAGAGCACGCTCCTGGTGTGGG
TCTACCGCTTCGACAGAGACGACCCTTACCGCCCCGTGCCGAACGAGGCT
GCCCTCCACTTTGCACAGCTGCCGCCTACGAAACAAGTGCTGGATGTGGA
AGCTGTCGGCAGGCGTTTCGGGGATGGGGCAGGCGCAACGGTCGGGGTAC
AAGGGGGCCCGCGGGATACCGGCCTCTTGGCGTGGTTGTGGGCCGGGGAC
ACGTGGAGTGGAGGCTCTGGGAGCGGTACCGGCGGCGCCGGGCACGGCGG
TGGCGTCAGGCAACACTTCATCGGCGGTACCTTGTGGCGGGGAAGACTGC
TTCGCGTCGAGCGCGGGAGGAGGAGGACGACGACGACGACGATATACAAC
GGGCCATCGCCTTGTCTCTGGCGACGGCGTCGGGATCGACCAAGGGTTTT
GCAAGCAAAGCATGAAGTTAGCAACAGATTTCGGGTCGAGCGATATTAGA
TTTCGTCGAGATTGTTTCTTAAAACGTGTGCGAGCAGGCAGTGCTCATGT
AAGAACGCTAGCGTGGATAATTCACGTGGTAGGAAAGTTTCTAAAATTCA
GCGGTTAATGTGCGCATGGACCATGCGAAGGCTGCGGTATCGAAGAAAAC
CGCCCACATGCCCGGATTCCGCTTTCATGTTCGCAGTAATCGGGTTAAAA
AAAATTGGTTGTCGATAACGAATCGCTTGAGCGGCGTATATACCTGCAGT
GGTTGAGTTAATCGTTGGGGCTGTTTTTCCCATCCACGTGTTGTGTGTGG
CGCTTCATGAGCTTTGTTGTGCCCCTAGAACTTGGTTGTTTTCGCGCTTC
ATGATTCGCACCTGCAGTAAAGGTGCAGAGTTTTGTTTGCTTTCCCGGCC
TCAGTCACTCCCACAAGAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig85:100892..103410+

>mRNA_P-fluviatile_contig85.14893.1 ID=mRNA_P-fluviatile_contig85.14893.1|Name=mRNA_P-fluviatile_contig85.14893.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1956bp|location=Sequence derived from alignment at P-fluviatile_contig85:100892..103410+ (Porterinema fluviatile SAG_2381)
ATGACAACTACATCATGGGACGCTGGGGAAACCAAGGCTTCTGAAATCAG
ATGGAAGGGAAGGAACCATCTGAATTTCGAAGTAGGCCGGTGCAGACTTC
GCGCCCTCCCTGTCGTGATTCATATTCTTCCAGAGGACATCGACTGGTTC
TCATCGATGACAACTACATCATGGGACGCTGGGGAAACCAAGGCTTCTGA
AATCAGATGGAAGGGAAGGAACCATCTGAATTTCGAAGTAGGCCGGTGCA
GACTTCGCGCCCTCCCTGTCGTGATTCATATTCTTCCAGAGGACATCGAC
TGGTTCTCATCGGATTCGTCGCTTTTTGACGAGCTCAAGCTGCTGCTGCG
AGATCGTGTGATCTCGGCCACTGGCAACGGCGACAAGGACCCCGAGGCGA
CGAAGTCACGGAAGCGCGCCCGAAAGGAGGAGCTGTGCGTGCAGGGCGAA
CGGCTCCAGTTCACCTATCGCTACCGGAAGACCTTACCCAGGATTCGTCG
CTTTTTGACGAGCTCAAGCTGCTGCTGCGAGATCGTGTGATCTCGGCCAC
TGGCAACGGCGACAAGGACCCCGAGGCGACGAAGTCACGGAAGCGCGCCC
GAAAGGAGGAGCTGTGCGTGCAGGGCGAACGGCTCCAGTTCACCTATCGC
TACCGGAAGACCTTACCCAGGTACACCGTGCTCTCCTACGCCGACGATAG
TACGCAAAATCCTAAGAACAGCAGCAGCAGCATCGGCACCAGCGACAGCC
GCACTTCCGCGGGGAGTGGTAAGAGCAACCATCCTGGCAGCAACAGCGGC
AGCGGCAGCTGCGGACCAGAGTTCCGGCATTTACCCCTGTCGGAGAGCAC
GCTCCTGGTGTGGGTCTACCGCTTCGACAGAGACGACCCTTACCGCCCCG
TGCCGAACGAGGCTGCCCTCCACTTTGCACAGCTGCCGCCTACGAAACAA
GTGCTGGATGTGGAAGCTGTCGGCAGGCGTTTCGGGGATGGGGCAGGCGC
AACGGTCGGGGTACAAGGGGGCCCGCGGGATACCGGCCTCTTGGCGTGGT
TGTGGGCCGGGGACACGTGGAGTGGAGGCTCTGGGAGCGGTACCGGCGGC
GCCGGGCACGGCGGTGGCGTCAGGCAACACTTCATCGGCGGTACCTTGTG
GCGGGGAAGACTGCTTCGCGTCGAGCGCGGGAGGAGGAGGACGACGACGA
CGACGATATACAACGGGCCATCGCCTTGTCTCTGGCGACGGCGTCGGGAT
CGACCAAGGGTTTTGCAAGCAAAGCATGAAGTTAGCAACAGATTTCGGGT
CGAGCGATATTAGGTACACCGTGCTCTCCTACGCCGACGATAGTACGCAA
AATCCTAAGAACAGCAGCAGCAGCATCGGCACCAGCGACAGCCGCACTTC
CGCGGGGAGTGGTAAGAGCAACCATCCTGGCAGCAACAGCGGCAGCGGCA
GCTGCGGACCAGAGTTCCGGCATTTACCCCTGTCGGAGAGCACGCTCCTG
GTGTGGGTCTACCGCTTCGACAGAGACGACCCTTACCGCCCCGTGCCGAA
CGAGGCTGCCCTCCACTTTGCACAGCTGCCGCCTACGAAACAAGTGCTGG
ATGTGGAAGCTGTCGGCAGGCGTTTCGGGGATGGGGCAGGCGCAACGGTC
GGGGTACAAGGGGGCCCGCGGGATACCGGCCTCTTGGCGTGGTTGTGGGC
CGGGGACACGTGGAGTGGAGGCTCTGGGAGCGGTACCGGCGGCGCCGGGC
ACGGCGGTGGCGTCAGGCAACACTTCATCGGCGGTACCTTGTGGCGGGGA
AGACTGCTTCGCGTCGAGCGCGGGAGGAGGAGGACGACGACGACGACGAT
ATACAACGGGCCATCGCCTTGTCTCTGGCGACGGCGTCGGGATCGACCAA
GGGTTTTGCAAGCAAAGCATGAAGTTAGCAACAGATTTCGGGTCGAGCGA
TATTAG
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