mRNA_P-fluviatile_contig85.14888.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig85.14888.1
Unique NamemRNA_P-fluviatile_contig85.14888.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig85.14888.1 vs. uniprot
Match: A0A6H5JU81_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU81_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 4.350e-33
Identity = 58/101 (57.43%), Postives = 71/101 (70.30%), Query Frame = 3
Query:   39 EEPEVRALHR*WNGDGVRGR------VDHRRWTKIPLLIPPIKTHHTFEEYAWSRRLESIRKDIDCLFGRIEGRWRLFKGGILFNTREQIDNAWFTACILH 323
            EEP      + +N DG          +    + KIPLLIPPIKTH+T EE+ WSRRLES+RKDI+C FGR++G WRLF G ILF+TR ++DNAWFTACILH
Sbjct:  132 EEPWKSYKFKLYNADGTETECTGAWIIVDGGYPKIPLLIPPIKTHNTVEEHGWSRRLESMRKDIECCFGRVKGLWRLFGGDILFSTRPKVDNAWFTACILH 232          
BLAST of mRNA_P-fluviatile_contig85.14888.1 vs. uniprot
Match: A0A6H5KVL5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL5_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 8.820e-33
Identity = 54/78 (69.23%), Postives = 65/78 (83.33%), Query Frame = 3
Query:   90 RGRVDHRRWTKIPLLIPPIKTHHTFEEYAWSRRLESIRKDIDCLFGRIEGRWRLFKGGILFNTREQIDNAWFTACILH 323
            R  V H     IPLLIPPIKTH+T EE+ WSRRLES+RKDI+C FGR++GRWRLF G +LF+TR+++DNAWFTACILH
Sbjct:  153 RSAVSH-----IPLLIPPIKTHNTVEEHDWSRRLESMRKDIECCFGRVKGRWRLFGGDMLFSTRQKVDNAWFTACILH 225          
BLAST of mRNA_P-fluviatile_contig85.14888.1 vs. uniprot
Match: A0A6H5K604_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K604_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.080e-31
Identity = 57/101 (56.44%), Postives = 70/101 (69.31%), Query Frame = 3
Query:   39 EEPEVRALHR*WNGDGVRGR------VDHRRWTKIPLLIPPIKTHHTFEEYAWSRRLESIRKDIDCLFGRIEGRWRLFKGGILFNTREQIDNAWFTACILH 323
            EEP     ++ +N DG          V    + KIPLLIPPIK H T EE+ WSRRLES+RKDI+C +GR++GR+RLFK GIL+ TR+ IDN WFTACILH
Sbjct:  121 EEPWSSLKYKLYNADGSETEYKGAWLVVDGGYQKIPLLIPPIKHHATVEEHDWSRRLESMRKDIECCYGRVKGRFRLFKAGILYKTRDSIDNPWFTACILH 221          
BLAST of mRNA_P-fluviatile_contig85.14888.1 vs. uniprot
Match: A0A6H5K7N8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N8_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 7.250e-30
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 3
Query:  114 WTKIPLLIPPIKTHHTFEEYAWSRRLESIRKDIDCLFGRIEGRWRLFKGGILFNTREQIDNAWFTACILH 323
            + KIPLLIPPIKTH+T EE+ WSRRLES+RKDI+C FGR++GRWRLF G ILF+TR++ DNA FTACILH
Sbjct:  215 YPKIPLLIPPIKTHNTVEEHDWSRRLESMRKDIECCFGRVKGRWRLFGGDILFSTRQKGDNACFTACILH 284          
BLAST of mRNA_P-fluviatile_contig85.14888.1 vs. uniprot
Match: D7FV01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV01_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 8.990e-30
Identity = 53/101 (52.48%), Postives = 70/101 (69.31%), Query Frame = 3
Query:   39 EEPEVRALHR*WNGDGVRGR------VDHRRWTKIPLLIPPIKTHHTFEEYAWSRRLESIRKDIDCLFGRIEGRWRLFKGGILFNTREQIDNAWFTACILH 323
            EEP     ++  N DG          +    + KIPLL+PPIKTH++ E ++ SRR+ES+RKDI+C FGR++GRWRLF+G I F +RE+IDNAW TACILH
Sbjct:  117 EEPWKSMKYKLRNADGTETEYTGAWLIVDGGYPKIPLLMPPIKTHNSIERHSCSRRMESVRKDIECCFGRVKGRWRLFRGNIPFGSREKIDNAWLTACILH 217          
BLAST of mRNA_P-fluviatile_contig85.14888.1 vs. uniprot
Match: A0A6H5KCK8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK8_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.220e-26
Identity = 48/89 (53.93%), Postives = 63/89 (70.79%), Query Frame = 3
Query:  117 TKIPLLIPPIKTHHTFEEYAWSRRLESIRKDIDCLFGRIEGRWRLF--------------------KGGILFNTREQIDNAWFTACILH 323
            ++IPLLIPPIKTH+T +E+ WSRRL+++RKDI+C FGR++GRWRLF                     G ILF+ R+++DNAWFTACILH
Sbjct:  129 SQIPLLIPPIKTHNTVKEHDWSRRLDNMRKDIECCFGRVKGRWRLFGVPVGNNAFSQRXXXXXXXXXGDILFSARQKVDNAWFTACILH 217          
BLAST of mRNA_P-fluviatile_contig85.14888.1 vs. uniprot
Match: A0A6H5KRU1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU1_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.150e-24
Identity = 43/68 (63.24%), Postives = 55/68 (80.88%), Query Frame = 3
Query:  120 KIPLLIPPIKTHHTFEEYAWSRRLESIRKDIDCLFGRIEGRWRLFKGGILFNTREQIDNAWFTACILH 323
            ++PLLI P K +    E  WS+RLES+RKDI+CLFGR++GR+RLFK GILF  R +ID+AWFTACI+H
Sbjct:  154 RVPLLICPFKVYANVAEQQWSKRLESVRKDIECLFGRLKGRFRLFKTGILFGDRTKIDDAWFTACIIH 221          
BLAST of mRNA_P-fluviatile_contig85.14888.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.660e-24
Identity = 44/68 (64.71%), Postives = 56/68 (82.35%), Query Frame = 3
Query:  120 KIPLLIPPIKTHHTFEEYAWSRRLESIRKDIDCLFGRIEGRWRLFKGGILFNTREQIDNAWFTACILH 323
            ++P LI P K + +  +  WS+R ESIRKDI+CLFGR++GR+RLFK GILF TRE+IDNAWFTACI+H
Sbjct:  288 RVPSLICPFKEYASEAQQEWSKRFESIRKDIECLFGRLKGRFRLFKTGILFGTREKIDNAWFTACIIH 355          
BLAST of mRNA_P-fluviatile_contig85.14888.1 vs. uniprot
Match: A0A6H5KFT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFT7_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 8.510e-24
Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = 3
Query:  117 TKIPLLIPPIKTHHTFEEYAWSRRLESIRKDIDCLFGRIEGRWRLFKGGILFNTREQIDNAWFTACILH 323
            T +PLLI P K +    E  WS+RLES+RKDI+CLFGR++GR+RLFK GILF  R +ID+A FTACI+H
Sbjct:   54 TCVPLLICPFKVYANVAEQQWSKRLESVRKDIECLFGRLKGRFRLFKTGILFGDRTKIDDACFTACIIH 122          
BLAST of mRNA_P-fluviatile_contig85.14888.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.350e-23
Identity = 43/68 (63.24%), Postives = 55/68 (80.88%), Query Frame = 3
Query:  120 KIPLLIPPIKTHHTFEEYAWSRRLESIRKDIDCLFGRIEGRWRLFKGGILFNTREQIDNAWFTACILH 323
            ++PLLI P K +    E  WS+RLES+RKDI+CLFGR++GR+RLFK GILF  R +ID+AWFTACI+H
Sbjct:  386 RVPLLICPFKVYANVAEQQWSKRLESVRKDIECLFGRLKGRFRLFKTGILFGDRTKIDDAWFTACIIH 453          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig85.14888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JU81_9PHAE4.350e-3357.43DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KVL5_9PHAE8.820e-3369.23DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K604_9PHAE1.080e-3156.44Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7N8_9PHAE7.250e-3074.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV01_ECTSI8.990e-3052.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCK8_9PHAE3.220e-2653.93DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KRU1_9PHAE1.150e-2463.24Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JV45_9PHAE2.660e-2464.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFT7_9PHAE8.510e-2462.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0H2_9PHAE1.350e-2363.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig85contigP-fluviatile_contig85:43080..43897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHarbinger transposase-derived nuclease domain
Ec32 orthologEc-00_003910.1
Exons2
Model size356
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817291.6357372-CDS-P-fluviatile_contig85:43079..432011622817291.6357372-CDS-P-fluviatile_contig85:43079..43201Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 43080..43201 +
1693571960.27421-CDS-P-fluviatile_contig85:43079..432011693571960.27421-CDS-P-fluviatile_contig85:43079..43201Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 43080..43201 +
1622817291.6473517-CDS-P-fluviatile_contig85:43665..438971622817291.6473517-CDS-P-fluviatile_contig85:43665..43897Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 43666..43897 +
1693571960.2832842-CDS-P-fluviatile_contig85:43665..438971693571960.2832842-CDS-P-fluviatile_contig85:43665..43897Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 43666..43897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig85.14888.1prot_P-fluviatile_contig85.14888.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig85 43080..43897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig85.14888.1

>prot_P-fluviatile_contig85.14888.1 ID=prot_P-fluviatile_contig85.14888.1|Name=mRNA_P-fluviatile_contig85.14888.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=118bp
DESIWRIRNQEPWKSLRFELYIADGTETEYEGAWIIVDGRRSLFSSHRSR
HTTPSRNTLGAGDWRASARTSIAFSAGSKGAGGFSRAESSSTRGSRSTTR
GSRRAFSTVRYTTYPLS*
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mRNA from alignment at P-fluviatile_contig85:43080..43897+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig85.14888.1 ID=mRNA_P-fluviatile_contig85.14888.1|Name=mRNA_P-fluviatile_contig85.14888.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=818bp|location=Sequence derived from alignment at P-fluviatile_contig85:43080..43897+ (Porterinema fluviatile SAG_2381)
GACGAGTCCATCTGGCGAATTCGCAACCAGGAGCCGTGGAAGAGCCTGAG GTTCGAGCTTTACATCGCTGATGGAACGGAGACGGAGTACGAGGGCGCGT GGATCATCGTCGATGGACGAAGGTGAGGCAGTTGGGGGTTCATGCCCTAC CCCTCCCTCGTTGTGTAAAACATGGGCGTTTGCGATTGTGAAACCGATGT GCTCTTAACGGCGCTTTGCGCTTGTAAAACCGAATGCAGACCGCCCGGCC TCCCTCTCTCTCCCCCTCTGTCTCTTTTTCCGGGGTAGCATAATTTGCAT TTTTTGGAAGCAAGCTCCCCTCTCTATAGGACCTACTCCGCAGCGGCGAC AGCACGAGGCGTGCGCTTGTGTTGCACTCTGTTATGTACAATACATGAGC AAGGTCGTAGTCGTACCCAACGAGACCCCGCACACTGCAAAAATAAAATG GTATAATATGACTTGCGTGCGAGTGTTGCCTTCAACGTCGAAAACGGTCC CGTGGTTCAGTCCCCCTGACCCAACCCTGGCTCTCCCGCTGCCCTCTCCA CTTCCCGACCCACCCCcgCCTCCCCCTCTCTGATAGATCCCTCTTCTCAT CCCACCGATCAAGACACACCACACCTTCGAGGAATACGCTTGGAGCAGGC GATTGGAGAGCATCCGCAAGGACATCGATTGCCTTTTCGGCAGGATCGAA GGGCGCTGGAGGCTTTTCAAGGGCGGAATCCTCTTCAACACGCGGGAGCA GATCGACAACGCGTGGTTCACGGCGTGCATTCTCCACTGTTAGATATACA ACATATCCACTGAGCTAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig85:43080..43897+

>mRNA_P-fluviatile_contig85.14888.1 ID=mRNA_P-fluviatile_contig85.14888.1|Name=mRNA_P-fluviatile_contig85.14888.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=708bp|location=Sequence derived from alignment at P-fluviatile_contig85:43080..43897+ (Porterinema fluviatile SAG_2381)
GACGAGTCCATCTGGCGAATTCGCAACCAGGAGCCGTGGAAGAGCCTGAG
GTTCGAGCTTTACATCGCTGATGGAACGGAGACGGAGTACGAGGGCGCGT
GGATCATCGTCGATGGACGAAGGACGAGTCCATCTGGCGAATTCGCAACC
AGGAGCCGTGGAAGAGCCTGAGGTTCGAGCTTTACATCGCTGATGGAACG
GAGACGGAGTACGAGGGCGCGTGGATCATCGTCGATGGACGAAGATCCCT
CTTCTCATCCCACCGATCAAGACACACCACACCTTCGAGGAATACGCTTG
GAGCAGGCGATTGGAGAGCATCCGCAAGGACATCGATTGCCTTTTCGGCA
GGATCGAAGGGCGCTGGAGGCTTTTCAAGGGCGGAATCCTCTTCAACACG
CGGGAGCAGATCGACAACGCGTGGTTCACGGCGTGCATTCTCCACTGTTA
GATATACAACATATCCACTGAGCTAAATCCCTCTTCTCATCCCACCGATC
AAGACACACCACACCTTCGAGGAATACGCTTGGAGCAGGCGATTGGAGAG
CATCCGCAAGGACATCGATTGCCTTTTCGGCAGGATCGAAGGGCGCTGGA
GGCTTTTCAAGGGCGGAATCCTCTTCAACACGCGGGAGCAGATCGACAAC
GCGTGGTTCACGGCGTGCATTCTCCACTGTTAGATATACAACATATCCAC
TGAGCTAA
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