mRNA_P-fluviatile_contig85.14885.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig85.14885.1
Unique NamemRNA_P-fluviatile_contig85.14885.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig85.14885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig85contigP-fluviatile_contig85:11607..11905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size259
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817291.5963202-CDS-P-fluviatile_contig85:11606..117531622817291.5963202-CDS-P-fluviatile_contig85:11606..11753Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 11607..11753 +
1693571960.2493653-CDS-P-fluviatile_contig85:11606..117531693571960.2493653-CDS-P-fluviatile_contig85:11606..11753Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 11607..11753 +
1622817291.6071472-CDS-P-fluviatile_contig85:11793..119041622817291.6071472-CDS-P-fluviatile_contig85:11793..11904Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 11794..11904 +
1693571960.2635438-CDS-P-fluviatile_contig85:11793..119041693571960.2635438-CDS-P-fluviatile_contig85:11793..11904Porterinema fluviatile SAG_2381CDSP-fluviatile_contig85 11794..11904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig85.14885.1prot_P-fluviatile_contig85.14885.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig85 11607..11904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig85.14885.1

>prot_P-fluviatile_contig85.14885.1 ID=prot_P-fluviatile_contig85.14885.1|Name=mRNA_P-fluviatile_contig85.14885.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=86bp
LKPKFLASGSVRDDYLTDDEGVLWFAPRGDKPTLAVPRAMVPRVLSLVHS
SVATPGLRVPQFSSNRYSVGPLLDEMCENTCCPARA
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mRNA from alignment at P-fluviatile_contig85:11607..11905+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig85.14885.1 ID=mRNA_P-fluviatile_contig85.14885.1|Name=mRNA_P-fluviatile_contig85.14885.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=299bp|location=Sequence derived from alignment at P-fluviatile_contig85:11607..11905+ (Porterinema fluviatile SAG_2381)
CTCAAACCTAAGTTCCTGGCGTCGGGATCAGTCCGTGACGACTACCTCAC
CGATGACGAAGGCGTTTTGTGGTTCGCGCCACGAGGAGACAAGCCCACAC
TTGCAGTACCACGCGCCATGGTCCCCAGGGTGCTGTCCCTCGTACACGTC
CTCTGTGGCCACCCCGGGATTGCGCGTTCCACAAAAGTCCTCTGTGGCGA
CCCCGGGATTGCGCGTTCCACAATTCTCATCAAACAGATATTCAGTTGGC
CCACTCTTAGACGAGATGTGCGAGAATACGTGCTGTCCTGCGCGTGCCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig85:11607..11905+

>mRNA_P-fluviatile_contig85.14885.1 ID=mRNA_P-fluviatile_contig85.14885.1|Name=mRNA_P-fluviatile_contig85.14885.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=516bp|location=Sequence derived from alignment at P-fluviatile_contig85:11607..11905+ (Porterinema fluviatile SAG_2381)
CTCAAACCTAAGTTCCTGGCGTCGGGATCAGTCCGTGACGACTACCTCAC
CGATGACGAAGGCGTTTTGTGGTTCGCGCCACGAGGAGACAAGCCCACAC
TTGCAGTACCACGCGCCATGGTCCCCAGGGTGCTGTCCCTCGTACACCTC
AAACCTAAGTTCCTGGCGTCGGGATCAGTCCGTGACGACTACCTCACCGA
TGACGAAGGCGTTTTGTGGTTCGCGCCACGAGGAGACAAGCCCACACTTG
CAGTACCACGCGCCATGGTCCCCAGGGTGCTGTCCCTCGTACACTCCTCT
GTGGCGACCCCGGGATTGCGCGTTCCACAATTCTCATCAAACAGATATTC
AGTTGGCCCACTCTTAGACGAGATGTGCGAGAATACGTGCTGTCCTGCGC
GTGCCTCCTCTGTGGCGACCCCGGGATTGCGCGTTCCACAATTCTCATCA
AACAGATATTCAGTTGGCCCACTCTTAGACGAGATGTGCGAGAATACGTG
CTGTCCTGCGCGTGCC
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