mRNA_P-fluviatile_contig84.14873.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig84.14873.1
Unique NamemRNA_P-fluviatile_contig84.14873.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig84.14873.1 vs. uniprot
Match: D7FL27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL27_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 7.270e-62
Identity = 95/110 (86.36%), Postives = 103/110 (93.64%), Query Frame = 1
Query:    1 VTGLHSHWITDSIMAMQRPSSRLMKVYDIVGQFKRKGVTAIFNLTEPGEHPHCGDGLEKTSGFPYLPETFMREGISVYNFAWEDMTTPSMPRLTDIVRVAVSCLRRGGKV 330
            V GLHSHWI+DSI+ MQRPSSRL+K YDIVGQFKRKGVTAIFNLTEPGEHPHCGDGLEK SGFPYLPETFMREGISVYNF+WEDMTTPSM  L+DI+RVA+SCLR GGK+
Sbjct:  233 VNGLHSHWISDSIIGMQRPSSRLIKTYDIVGQFKRKGVTAIFNLTEPGEHPHCGDGLEKASGFPYLPETFMREGISVYNFSWEDMTTPSMALLSDIIRVALSCLRTGGKI 342          
BLAST of mRNA_P-fluviatile_contig84.14873.1 vs. uniprot
Match: A0A7S3GGD6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GGD6_9EUKA)

HSP 1 Score: 130 bits (328), Expect = 1.670e-36
Identity = 57/110 (51.82%), Postives = 77/110 (70.00%), Query Frame = 1
Query:    1 VTGLHSHWITDSIMAMQRPSSRLMKVYDIVGQFKRKGVTAIFNLTEPGEHPHCGDGLEKTSGFPYLPETFMREGISVYNFAWEDMTTPSMPRLTDIVRVAVSCLRRGGKV 330
            + GLHS W T+ I+A QRPSSRL+K Y+++  FK+ G+ A+ NL E GEHPHCGDG+ ++SGF Y P  FM   I  YNF+W DMT P+M ++ DIV+V    ++ G KV
Sbjct:   39 IPGLHSSWATEDIIACQRPSSRLIKEYELIDSFKKAGIGAVVNLQERGEHPHCGDGIHRSSGFSYFPAEFMDHDIFFYNFSWCDMTVPTMEQMLDIVQVIDFTIQSGRKV 148          
BLAST of mRNA_P-fluviatile_contig84.14873.1 vs. uniprot
Match: A0A1Y1VFR9_9FUNG (Phosphatases II n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1VFR9_9FUNG)

HSP 1 Score: 125 bits (315), Expect = 3.710e-34
Identity = 55/109 (50.46%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    1 VTGLHSHWITDSIMAMQRPSSRLMKVYDIVGQFKRKGVTAIFNLTEPGEHPHCGDGLEKTSGFPYLPETFMREGISVYNFAWEDMTTPSMPRLTDIVRVAVSCLRRGGK 327
            +TGL S+WI  +I+A QRPS+RL+K YD++ +FK+  + +I NL E GEHP+CGDG+E +SGF Y PE FM E I  YNF WED+ TP+   + +IV+V    L    K
Sbjct:   32 ITGLFSNWIGGNILATQRPSTRLIKKYDLINEFKKNNILSIINLEEFGEHPNCGDGIESSSGFAYKPEDFMNEEIFYYNFGWEDLKTPTFQNMLNIVQVLTFSLENNKK 140          
BLAST of mRNA_P-fluviatile_contig84.14873.1 vs. uniprot
Match: A0A5D6Y9Y0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y9Y0_9STRA)

HSP 1 Score: 133 bits (334), Expect = 6.410e-34
Identity = 64/108 (59.26%), Postives = 77/108 (71.30%), Query Frame = 1
Query:    1 VTGLHSHWITDSIMAMQRPSSRLMKVYDIVGQFKRKGVTAIFNLTEPGEHPHCGDGLEKTSGFPYLPET-FMREGISVYNFAWEDMTTPSMPRLTDIVRVAVSCLRRG 321
            V GLH+ W+TD ++ M RPSSRLMK Y I  QF +  V+A+FNLT PGEHP+CGDGL   SGFPY PET  M   I  YNF WEDMTTP++P + DIV+V  S L+ G
Sbjct:   42 VLGLHADWVTDRVLGMMRPSSRLMKDYQIAQQFTKLRVSAVFNLTLPGEHPYCGDGLV-ASGFPYDPETDLMLHNIRFYNFGWEDMTTPTLPFMMDIVKVMASVLQDG 148          
BLAST of mRNA_P-fluviatile_contig84.14873.1 vs. uniprot
Match: F0W109_9STRA (Uncharacterized protein AlNc14C5G789 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W109_9STRA)

HSP 1 Score: 132 bits (331), Expect = 9.470e-34
Identity = 62/108 (57.41%), Postives = 78/108 (72.22%), Query Frame = 1
Query:    1 VTGLHSHWITDSIMAMQRPSSRLMKVYDIVGQFKRKGVTAIFNLTEPGEHPHCGDGLEKTSGFPYLPET-FMREGISVYNFAWEDMTTPSMPRLTDIVRVAVSCLRRG 321
            ++GLH+ W+TD I+ M RPSSRL+K Y I+ QF R  +TA+FNLT PGEHP CGDGL  +SGFPY PE  FM + I  YNF WEDMT P++  + DIV+V  S L+ G
Sbjct:   42 ISGLHADWVTDRILGMMRPSSRLIKQYHIIDQFHRHRITAVFNLTIPGEHPFCGDGLG-SSGFPYDPEIDFMAQKIQFYNFGWEDMTVPTLSLMMDIVKVMTSMLQDG 148          
BLAST of mRNA_P-fluviatile_contig84.14873.1 vs. uniprot
Match: A0A8J8T7L3_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8T7L3_HALGN)

HSP 1 Score: 132 bits (331), Expect = 1.810e-33
Identity = 57/110 (51.82%), Postives = 79/110 (71.82%), Query Frame = 1
Query:    1 VTGLHSHWITDSIMAMQRPSSRLMKVYDIVGQFKRKGVTAIFNLTEPGEHPHCGDGLEKTSGFPYLPETFMREGISVYNFAWEDMTTPSMPRLTDIVRVAVSCLRRGGKV 330
            + GLHS+WI ++++  QR S RL+  +DI+ QFK+KG+TAIFNL EPGEHP CGDG+   +GF Y PE  M  GIS +N  W+D+T PS  ++ +IV+V    +R+GGKV
Sbjct:  155 IQGLHSNWINENVIGSQRLSDRLIHEFDIIKQFKQKGITAIFNLQEPGEHPFCGDGISLRTGFSYTPELLMNNGISFFNCYWKDLTNPSFEQMLNIVQVMDFIIRQGGKV 264          
BLAST of mRNA_P-fluviatile_contig84.14873.1 vs. uniprot
Match: K3WRR2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRR2_GLOUD)

HSP 1 Score: 131 bits (330), Expect = 2.230e-33
Identity = 63/108 (58.33%), Postives = 78/108 (72.22%), Query Frame = 1
Query:    1 VTGLHSHWITDSIMAMQRPSSRLMKVYDIVGQFKRKGVTAIFNLTEPGEHPHCGDGLEKTSGFPYLPET-FMREGISVYNFAWEDMTTPSMPRLTDIVRVAVSCLRRG 321
            V GLH+ W+T+ I+ M RPSSRLMK Y I  QF++  ++A+FNLT PGEHP+CGDGL   SGFPY PE   M E I  YNF WEDMTTP++P + DIV+V  S L+ G
Sbjct:   42 VLGLHADWVTNRILGMMRPSSRLMKDYQIAQQFQKLRISAVFNLTLPGEHPYCGDGLA-ASGFPYDPEKDLMVENIHFYNFGWEDMTTPTLPFMMDIVKVMASILQDG 148          
BLAST of mRNA_P-fluviatile_contig84.14873.1 vs. uniprot
Match: A0A024G075_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G075_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.010e-33
Identity = 63/108 (58.33%), Postives = 75/108 (69.44%), Query Frame = 1
Query:    1 VTGLHSHWITDSIMAMQRPSSRLMKVYDIVGQFKRKGVTAIFNLTEPGEHPHCGDGLEKTSGFPYLPET-FMREGISVYNFAWEDMTTPSMPRLTDIVRVAVSCLRRG 321
            + GLH+ WITD I+ M RPSSRL+K Y I  QF R  +TA+FNLT PGEHP CGDGL  +SGFPY PE  FM + I  YNF WEDMT P +  + DIV+V  S L+ G
Sbjct:   42 IPGLHADWITDRILGMMRPSSRLIKQYQITDQFHRHHITAVFNLTIPGEHPFCGDGLG-SSGFPYDPENDFMAQKIQFYNFGWEDMTVPPLSLMMDIVKVMTSMLQDG 148          
BLAST of mRNA_P-fluviatile_contig84.14873.1 vs. uniprot
Match: A0A485KLG7_9STRA (Aste57867_8782 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KLG7_9STRA)

HSP 1 Score: 130 bits (328), Expect = 3.270e-33
Identity = 60/105 (57.14%), Postives = 75/105 (71.43%), Query Frame = 1
Query:    1 VTGLHSHWITDSIMAMQRPSSRLMKVYDIVGQFKRKGVTAIFNLTEPGEHPHCGDGLEKTSGFPYLPET-FMREGISVYNFAWEDMTTPSMPRLTDIVRVAVSCL 312
            VTGLH+ W T+S++ M RPS+RLM+ Y +  QF+R  + A+FNLT PGEHPHCGDGL   SGFPY PET  M   I  YNFAWEDMTTP++P + D+ +V    L
Sbjct:   89 VTGLHADWATESMLGMMRPSTRLMQTYRVAEQFQRLRIKAVFNLTIPGEHPHCGDGLV-ASGFPYDPETDLMAHNIQFYNFAWEDMTTPALPFMVDLAKVMTGVL 192          
BLAST of mRNA_P-fluviatile_contig84.14873.1 vs. uniprot
Match: A0A078AY45_STYLE (Protein tyrosine phosphatase domain-containing protein 1 n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AY45_STYLE)

HSP 1 Score: 130 bits (326), Expect = 5.520e-33
Identity = 56/109 (51.38%), Postives = 77/109 (70.64%), Query Frame = 1
Query:    1 VTGLHSHWITDSIMAMQRPSSRLMKVYDIVGQFKRKGVTAIFNLTEPGEHPHCGDGLEKTSGFPYLPETFMREGISVYNFAWEDMTTPSMPRLTDIVRVAVSCLRRGGK 327
            + GLHS+WI D+++A QR S RL+  ++I+ QFK KGVTA+FNL EPGEHP+CGDG+   SGF Y PE  M  GI+ +NF W+D+T P+  RL +  +V    ++ GGK
Sbjct:   98 IQGLHSNWINDNVIASQRLSDRLIHQFEIIKQFKEKGVTAVFNLQEPGEHPYCGDGINVKSGFSYHPELLMNSGIAFFNFFWKDLTNPTFERLLNSAQVMDYIIKGGGK 206          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig84.14873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL27_ECTSI7.270e-6286.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3GGD6_9EUKA1.670e-3651.82Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
A0A1Y1VFR9_9FUNG3.710e-3450.46Phosphatases II n=1 Tax=Piromyces finnis TaxID=175... [more]
A0A5D6Y9Y0_9STRA6.410e-3459.26Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
F0W109_9STRA9.470e-3457.41Uncharacterized protein AlNc14C5G789 n=1 Tax=Albug... [more]
A0A8J8T7L3_HALGN1.810e-3351.82Uncharacterized protein n=1 Tax=Halteria grandinel... [more]
K3WRR2_GLOUD2.230e-3358.33Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A024G075_9STRA3.010e-3358.33Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A485KLG7_9STRA3.270e-3357.14Aste57867_8782 protein n=1 Tax=Aphanomyces stellat... [more]
A0A078AY45_STYLE5.520e-3351.38Protein tyrosine phosphatase domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig84contigP-fluviatile_contig84:161002..162538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score209.9
Seed ortholog evalue6.1e-52
Seed eggNOG ortholog2880.D7FL27
Preferred namePTPDC1
KEGG koko:K18078
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0031974,GO:0031981,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044782,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060271,GO:0065007,GO:0070013,GO:0070925,GO:0071704,GO:0071840,GO:0120031,GO:0120036,GO:0140096,GO:1901564
EggNOG free text desc.protein tyrosine/serine/threonine phosphatase activity
EggNOG OGsCOG2453@1,KOG1720@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Exons3
Model size336
Cds size336
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig84.14873.1prot_P-fluviatile_contig84.14873.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig84 161002..162538 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817289.79982-CDS-P-fluviatile_contig84:161001..1611051622817289.79982-CDS-P-fluviatile_contig84:161001..161105Porterinema fluviatile SAG_2381CDSP-fluviatile_contig84 161002..161105 +
1693571955.1733217-CDS-P-fluviatile_contig84:161001..1611051693571955.1733217-CDS-P-fluviatile_contig84:161001..161105Porterinema fluviatile SAG_2381CDSP-fluviatile_contig84 161002..161105 +
1622817289.810408-CDS-P-fluviatile_contig84:161726..1618451622817289.810408-CDS-P-fluviatile_contig84:161726..161845Porterinema fluviatile SAG_2381CDSP-fluviatile_contig84 161727..161845 +
1693571955.1843066-CDS-P-fluviatile_contig84:161726..1618451693571955.1843066-CDS-P-fluviatile_contig84:161726..161845Porterinema fluviatile SAG_2381CDSP-fluviatile_contig84 161727..161845 +
1622817289.8219807-CDS-P-fluviatile_contig84:162425..1625381622817289.8219807-CDS-P-fluviatile_contig84:162425..162538Porterinema fluviatile SAG_2381CDSP-fluviatile_contig84 162426..162538 +
1693571955.1930747-CDS-P-fluviatile_contig84:162425..1625381693571955.1930747-CDS-P-fluviatile_contig84:162425..162538Porterinema fluviatile SAG_2381CDSP-fluviatile_contig84 162426..162538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig84.14873.1

>prot_P-fluviatile_contig84.14873.1 ID=prot_P-fluviatile_contig84.14873.1|Name=mRNA_P-fluviatile_contig84.14873.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=112bp
VTGLHSHWITDSIMAMQRPSSRLMKVYDIVGQFKRKGVTAIFNLTEPGEH
PHCGDGLEKTSGFPYLPETFMREGISVYNFAWEDMTTPSMPRLTDIVRVA
VSCLRRGGKVR*
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mRNA from alignment at P-fluviatile_contig84:161002..162538+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig84.14873.1 ID=mRNA_P-fluviatile_contig84.14873.1|Name=mRNA_P-fluviatile_contig84.14873.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1537bp|location=Sequence derived from alignment at P-fluviatile_contig84:161002..162538+ (Porterinema fluviatile SAG_2381)
GTGACCGGGCTCCATTCGCACTGGATAACAGACTCTATCATGGCCATGCA GAGGCCCAGCAGCCGCCTCATGAAGGTGTACGACATCGTAGGACAGTTTA AGCGGTAAGTTACAAGTGTTGAAATGAGCATATTGGGGTCCCAGCAGCCT CCGGTTCGCAGACCTAGGGTCGACGTCCTCCTTGCCGCGAGGCATTGTCA TCGAAATGAAGCGAAACCAGGGTGTACATCATGAAACTTTGAAGGGTAAG TTTGAGGAATAAAAAACCGCGCATTTCCCCCGCCCCCGGGGTCAACATGC TGATTTGTTTGTTTTTGCACTCTTGAAACGATGGCCGTAGTGAATCGGAA GGCATCGTATTTTGTTAGCGGAGGACCAACCACACCTGAACTTCCAGCGA TGCATCTGGCATGGTATTGTGGGAACTTGTGCAACTGGGGACAGCAGTGA AGCAGCCAGTTCTATACGGGCGCAACTTGCATTCGAAGGAAAACCGAGGA TCGAAATCCGATTGACCTATGTTAGCATGCGTTGCTTTGTTGCTCCTTGG TTCGGTGGTGGCTGAGCCGGAAGGGGGTGACGGCAGTTTTCAATCTCACG GGACGGGGAAGCACCCTAATGAAACAACAGAAGAAACTGCAACGGAAGCA AGAAATTGAACGAAGAATACTTTAAATTGGTTTGCGTCAGGTCTTCACTC TCCTTCCTTCGATTTAATACCACAGAAAGGGGGTGACGGCGATTTTCAAC CTTACGGAACCGGGGGAGCACCCTCACTGCGGAGACGGCCTGGAGAAGAC AAGCGGCTTCCCTTACCTGCCCGAAACGTTTATGCGAGAAGGAAGTGAGC GACGACGACGGGCCGTGTCTGGTTTATCGAACGTGGTTTCGATTGCGACA TATATCGCCCGCTCGAAATGCTCCGTACCGTAACGTATCGTTTGCGACGT GACGGTGAATGCCGATTATTCCCCCCCTTCGCGACTCGTACCGTACTGCA TACGACATGGCGTTGATGCCGCACAATAACCCCCATCCTTAAGCGACTTT GGAAGCTGGAAAGCTCCACGAAAGGATGAGTGCCAGGGCCCTTGTGAGCG TCTTTGGAGAGATCTCAGTCAGCAAGACGCACGGTTGAGAATTCATGCCT GCTCGACGTCTTGACGAGCCCAAACAGGATTGTAAAAACAGACTCAAATG GAATGGCATCCGTTGCATGCCGTCGTATTCGGTACCCAGGTGGCCGACCT CTGTTGGTAATGCTGTCCGTTGTTTCCCGTAATCGCTGCTTGATTGCTCG GAGCGGGAGTCCGTCAATTATCGTGCGATTACGAGTTCACGCAACACATA CCTCGCAGCCCCAACATTGTATCCTAACGTCGAATCCGCCGCATCCCCTG CCTACCCAATCCGATGTATGCAAGTCTCGGTGTACAACTTCGCGTGGGAG GACATGACAACACCATCCATGCCACGCCTGACCGACATCGTCCGCGTCGC CGTCTCCTGCCTCCGAAGAGGAGGAAAGGTGCGCTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig84:161002..162538+

>mRNA_P-fluviatile_contig84.14873.1 ID=mRNA_P-fluviatile_contig84.14873.1|Name=mRNA_P-fluviatile_contig84.14873.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=672bp|location=Sequence derived from alignment at P-fluviatile_contig84:161002..162538+ (Porterinema fluviatile SAG_2381)
GTGACCGGGCTCCATTCGCACTGGATAACAGACTCTATCATGGCCATGCA
GAGGCCCAGCAGCCGCCTCATGAAGGTGTACGACATCGTAGGACAGTTTA
AGCGGTGACCGGGCTCCATTCGCACTGGATAACAGACTCTATCATGGCCA
TGCAGAGGCCCAGCAGCCGCCTCATGAAGGTGTACGACATCGTAGGACAG
TTTAAGCGAAAGGGGGTGACGGCGATTTTCAACCTTACGGAACCGGGGGA
GCACCCTCACTGCGGAGACGGCCTGGAGAAGACAAGCGGCTTCCCTTACC
TGCCCGAAACGTTTATGCGAGAAGGAAAAAGGGGGTGACGGCGATTTTCA
ACCTTACGGAACCGGGGGAGCACCCTCACTGCGGAGACGGCCTGGAGAAG
ACAAGCGGCTTCCCTTACCTGCCCGAAACGTTTATGCGAGAAGGAATCTC
GGTGTACAACTTCGCGTGGGAGGACATGACAACACCATCCATGCCACGCC
TGACCGACATCGTCCGCGTCGCCGTCTCCTGCCTCCGAAGAGGAGGAAAG
GTGCGCTGATCTCGGTGTACAACTTCGCGTGGGAGGACATGACAACACCA
TCCATGCCACGCCTGACCGACATCGTCCGCGTCGCCGTCTCCTGCCTCCG
AAGAGGAGGAAAGGTGCGCTGA
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