mRNA_P-fluviatile_contig84.14872.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig84.14872.1
Unique NamemRNA_P-fluviatile_contig84.14872.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig84.14872.1 vs. uniprot
Match: A0A6H5JB27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB27_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 1.900e-46
Identity = 102/164 (62.20%), Postives = 130/164 (79.27%), Query Frame = -2 
Query:  101 MHHQQNA-RSIAQALARELPEAAHLQAIKEACSTETPPVP-DTLDRLLDTSAFLLLCPEQTARVARAMGPLLLETVARALSAARTAASS---PAESSSITAMPALMNASTSLLFTAAADSTNSPAERAEEVLVAMSRLLPLAPHALPLALRHWRSSPHPFDCLT 577
            MHH++NA R+IA+ALARE+PEAAHLQAI++AC+  +P    D+L+++L+TSAFLLLCPEQT RVARA+GP LLE+VARALSAAR A++    P  ++  +++   MN S +         T SPAERAE+VLVAMSRLLP+APHALPLAL+HWRSSP PFDC+T
Sbjct:    1 MHHRENAHRTIAEALAREVPEAAHLQAIRDACAATSPSSSVDSLEKVLETSAFLLLCPEQTVRVARAVGPFLLESVARALSAARAASAGSLHPTIAAPESSVTIKMNLSVA---------TVSPAERAEDVLVAMSRLLPMAPHALPLALQHWRSSPSPFDCIT 155
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BLAST of mRNA_P-fluviatile_contig84.14872.1 vs. uniprot
Match: D7FL29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL29_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 1.560e-35
Identity = 91/161 (56.52%), Postives = 109/161 (67.70%), Query Frame = -2 
Query:  101 MHHQQNA-RSIAQALARELPEAAHLQAIKEACSTETPPVPD-TLDRLLDTSAFLLLCPEQTARVARAMGPLLLETVARALSAARTAASSPAESSSITAMPALMNASTSLLFTAAADSTNSPAERAEEVLVAMSRLLPLAPHALPLALRHWRSSPHPFDCLT 577
            MHH++NA R+IA+ALARELPE AHLQAI++ACS  +P     +L+++L+TSAFLLLCPEQT +VARAMGP               AA  P       A P     +      AA     SPAERAE+VLVAMSRLLP+APHALPLAL+HWRSSP PFDC+T
Sbjct:    1 MHHRENAHRTIAEALARELPETAHLQAIRDACSAISPSSSAYSLEKVLETSAFLLLCPEQTVQVARAMGPFXXXXXXXXXXXXXXAA--PGSLHPTVAAPESNATAKENPIVAAV----SPAERAEDVLVAMSRLLPVAPHALPLALQHWRSSPCPFDCIT 155
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig84.14872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JB27_9PHAE1.900e-4662.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL29_ECTSI1.560e-3556.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig84contigP-fluviatile_contig84:147333..148075 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size743
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig84.14872.1prot_P-fluviatile_contig84.14872.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig84 147521..147964 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817287.638166-UTR-P-fluviatile_contig84:147332..1475201622817287.638166-UTR-P-fluviatile_contig84:147332..147520Porterinema fluviatile SAG_2381UTRP-fluviatile_contig84 147333..147520 +
1693571950.2996802-UTR-P-fluviatile_contig84:147332..1475201693571950.2996802-UTR-P-fluviatile_contig84:147332..147520Porterinema fluviatile SAG_2381UTRP-fluviatile_contig84 147333..147520 +
1622817287.6674476-UTR-P-fluviatile_contig84:147964..1480751622817287.6674476-UTR-P-fluviatile_contig84:147964..148075Porterinema fluviatile SAG_2381UTRP-fluviatile_contig84 147965..148075 +
1693571950.3194382-UTR-P-fluviatile_contig84:147964..1480751693571950.3194382-UTR-P-fluviatile_contig84:147964..148075Porterinema fluviatile SAG_2381UTRP-fluviatile_contig84 147965..148075 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817287.6517317-CDS-P-fluviatile_contig84:147520..1479641622817287.6517317-CDS-P-fluviatile_contig84:147520..147964Porterinema fluviatile SAG_2381CDSP-fluviatile_contig84 147521..147964 +
1693571950.3111625-CDS-P-fluviatile_contig84:147520..1479641693571950.3111625-CDS-P-fluviatile_contig84:147520..147964Porterinema fluviatile SAG_2381CDSP-fluviatile_contig84 147521..147964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig84.14872.1

>prot_P-fluviatile_contig84.14872.1 ID=prot_P-fluviatile_contig84.14872.1|Name=mRNA_P-fluviatile_contig84.14872.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=148bp
MATKTSSARSAGEFVESAAAVNNNEVEAFIKAGIAVILLLSAGEEAAVRA
AESALATVSRRRGPMALATLAVCSGHSSRKADVSSSLSRVSGTGGVSVLH
ASLMACRWAASGSSRASAWAILRAFCWWCMFTPQKLLGRDGPAATVV*
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mRNA from alignment at P-fluviatile_contig84:147333..148075+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig84.14872.1 ID=mRNA_P-fluviatile_contig84.14872.1|Name=mRNA_P-fluviatile_contig84.14872.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=743bp|location=Sequence derived from alignment at P-fluviatile_contig84:147333..148075+ (Porterinema fluviatile SAG_2381)
CTTCATCTACTGCTGCGATCGTGCCGCTACTGGTATCTGCCGCCGCCGCC
CCCACCGCCGCTGCAGCTACTGTTGGCTCTGTCGCTGCTGCCATCGCGGC
CGTGAGGCAGTCGAAAGGGTGGGGGGACGACCGCCAGTGCCGCAGGGCAA
GGGGCAGCGCGTGAGGCGCCAGGGGCAGGAGACGGCTCATGGCCACCAAG
ACCTCCTCTGCTCGCTCCGCAGGCGAGTTTGTAGAATCGGCGGCGGCGGT
AAACAACAATGAGGTTGAAGCATTCATCAAGGCGGGCATTGCTGTGATAC
TGCTGCTCTCTGCCGGAGAAGAGGCTGCTGTGCGCGCCGCCGAAAGTGCT
CTCGCGACGGTCTCGAGGAGGAGAGGACCCATGGCCCTGGCGACTCTTGC
CGTTTGCTCGGGACACAGCAGCAGGAAGGCCGACGTATCAAGCAGTCTGT
CCAGGGTGTCTGGTACGGGAGGTGTCTCTGTGCTGCATGCCTCCTTGATG
GCTTGCAGATGGGCAGCCTCCGGGAGCTCGCGAGCGAGCGCTTGGGCGAT
ACTTCGGGCATTTTGCTGGTGGTGCATGTTCACTCCCCAAAAATTGCTTG
GACGGGATGGCCCTGCCGCCACAGTTGTATAAGTTTGAGTGCGCGTCTAG
GGCTGAGCACGCAGGTGCGTCGTGCGTTGGGTCTTGGTTGCCCACAAAAT
GTTCCGCTCCCGCGGTGTGAGTTCGTTGTAGAGGGGCAGAGAT
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Coding sequence (CDS) from alignment at P-fluviatile_contig84:147333..148075+

>mRNA_P-fluviatile_contig84.14872.1 ID=mRNA_P-fluviatile_contig84.14872.1|Name=mRNA_P-fluviatile_contig84.14872.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=888bp|location=Sequence derived from alignment at P-fluviatile_contig84:147333..148075+ (Porterinema fluviatile SAG_2381)
ATGGCCACCAAGACCTCCTCTGCTCGCTCCGCAGGCGAGTTTGTAGAATC
GGCGGCGGCGGTAAACAACAATGAGGTTGAAGCATTCATCAAGGCGGGCA
TTGCTGTGATACTGCTGCTCTCTGCCGGAGAAGAGGCTGCTGTGCGCGCC
GCCGAAAGTGCTCTCGCGACGGTCTCGAGGAGGAGAGGACCCATGGCCCT
GGCGACTCTTGCCGTTTGCTCGGGACACAGCAGCAGGAAGGCCGACGTAT
CAAGCAGTCTGTCCAGGGTGTCTGGTACGGGAGGTGTCTCTGTGCTGCAT
GCCTCCTTGATGGCTTGCAGATGGGCAGCCTCCGGGAGCTCGCGAGCGAG
CGCTTGGGCGATACTTCGGGCATTTTGCTGGTGGTGCATGTTCACTCCCC
AAAAATTGCTTGGACGGGATGGCCCTGCCGCCACAGTTGTATAAATGGCC
ACCAAGACCTCCTCTGCTCGCTCCGCAGGCGAGTTTGTAGAATCGGCGGC
GGCGGTAAACAACAATGAGGTTGAAGCATTCATCAAGGCGGGCATTGCTG
TGATACTGCTGCTCTCTGCCGGAGAAGAGGCTGCTGTGCGCGCCGCCGAA
AGTGCTCTCGCGACGGTCTCGAGGAGGAGAGGACCCATGGCCCTGGCGAC
TCTTGCCGTTTGCTCGGGACACAGCAGCAGGAAGGCCGACGTATCAAGCA
GTCTGTCCAGGGTGTCTGGTACGGGAGGTGTCTCTGTGCTGCATGCCTCC
TTGATGGCTTGCAGATGGGCAGCCTCCGGGAGCTCGCGAGCGAGCGCTTG
GGCGATACTTCGGGCATTTTGCTGGTGGTGCATGTTCACTCCCCAAAAAT
TGCTTGGACGGGATGGCCCTGCCGCCACAGTTGTATAA
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