mRNA_P-fluviatile_contig84.14871.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig84.14871.1
Unique NamemRNA_P-fluviatile_contig84.14871.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig84.14871.1 vs. uniprot
Match: A0A6H5JB27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB27_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 3.160e-21
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = -1 
Query:  409 HKLLSCAAVGPSLTAAAGGPWNWSPFFDLCRHPDALVRWRAVGVCASLLGLDERGRRRLLE 591
            HKLLSCA+V  S+ A     WNWSPFF LCRH DALVRWRAVGVC+SLLGLDE+GRRRLLE
Sbjct:  194 HKLLSCASVSRSMAAL----WNWSPFFGLCRHRDALVRWRAVGVCSSLLGLDEQGRRRLLE 250
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BLAST of mRNA_P-fluviatile_contig84.14871.1 vs. uniprot
Match: D7FL29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL29_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 9.260e-20
Identity = 47/66 (71.21%), Postives = 52/66 (78.79%), Query Frame = -1 
Query:  400 HKLLSCAAVGPSLTAAAGGPWNWSPFFDLCRHPDALVRWRAVGVCAS--LLGLDERGRRRLLEGRR 591
            HKLLSCAA+  S+ A     WNWSPFF LCRHPDALVRW AVGVC+S  LLGLDE+GRRRLL+  R
Sbjct:  195 HKLLSCAALSRSIAAL----WNWSPFFGLCRHPDALVRWHAVGVCSSSSLLGLDEQGRRRLLKAAR 256
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig84.14871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JB27_9PHAE3.160e-2177.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL29_ECTSI9.260e-2071.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig84contigP-fluviatile_contig84:146674..147266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size593
Cds size591
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817287.6002343-CDS-P-fluviatile_contig84:146673..1472641622817287.6002343-CDS-P-fluviatile_contig84:146673..147264Porterinema fluviatile SAG_2381CDSP-fluviatile_contig84 146674..147264 +
1693571950.290366-CDS-P-fluviatile_contig84:146673..1472641693571950.290366-CDS-P-fluviatile_contig84:146673..147264Porterinema fluviatile SAG_2381CDSP-fluviatile_contig84 146674..147264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig84.14871.1prot_P-fluviatile_contig84.14871.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig84 146674..147264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig84.14871.1

>prot_P-fluviatile_contig84.14871.1 ID=prot_P-fluviatile_contig84.14871.1|Name=mRNA_P-fluviatile_contig84.14871.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=197bp
GGGGGRGRKEHRRAMRGGLGFGLRFGRAPSCWFASRLKCCPRPPSQNLEG
GGCWPEAVAAVVQGRTARDVGTQRGRARHSKSPRCRYRRRHFHRLRLWRV
RASSCWNHCCCCCHRRCFLLLPSSAEDLVPSPRPPSLQQPPAAALVEAEK
GRADPDRAPADEGVRMPAQVEEGRPVPRTARRRGEAWPNGGAREELV
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mRNA from alignment at P-fluviatile_contig84:146674..147266+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig84.14871.1 ID=mRNA_P-fluviatile_contig84.14871.1|Name=mRNA_P-fluviatile_contig84.14871.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=593bp|location=Sequence derived from alignment at P-fluviatile_contig84:146674..147266+ (Porterinema fluviatile SAG_2381)
GGAGGAGGAGGAGGGCGGGGGAGGAAGGAGCATCGGCGCGCAATGCGTGG
TGGCCTTGGTTTCGGCCTTCGCTTTGGTCGTGCGCCGAGCTGCTGGTTCG
CATCTCGCCTGAAGTGCTGTCCACGGCCGCCGTCGCAGAATTTGGAAGGT
GGCGGCTGTTGGCCTGAGGCAGTTGCAGCGGTGGTACAAGGGCGGACGGC
GCGCGACGTAGGGACTCAGAGAGGTCGAGCCCGGCATTCAAAATCGCCTC
GTTGTCGCTATCGCCGCCGCCATTTCCACCGCCTCCGCCTCTGGAGAGTG
CGCGCCTCCTCCTGCTGGAATCACTGCTGCTGCTGCTGCCACCGCCGCTG
TTTCCTGCTGCTGCCGTCGTCGGCAGAAGATCTTGTGCCCTCTCCCCGGC
CGCCGTCCCTCCAGCAGCCTCCTGCGGCCGCGCTCGTCGAGGCCGAGAAG
GGACGCGCAGACCCCGACCGCGCGCCAGCGGACGAGGGCGTCCGGATGCC
GGCACAGGTCGAAGAAGGGAGACCAGTTCCACGGACCGCCCGCCGCCGCG
GTGAGGCTTGGCCCAACGGCGGCGCACGAGAGGAGCTTGTGCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig84:146674..147266+

>mRNA_P-fluviatile_contig84.14871.1 ID=mRNA_P-fluviatile_contig84.14871.1|Name=mRNA_P-fluviatile_contig84.14871.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1182bp|location=Sequence derived from alignment at P-fluviatile_contig84:146674..147266+ (Porterinema fluviatile SAG_2381)
GGAGGAGGAGGAGGGCGGGGGAGGAAGGAGCATCGGCGCGCAATGCGTGG
TGGCCTTGGTTTCGGCCTTCGCTTTGGTCGTGCGCCGAGCTGCTGGTTCG
CATCTCGCCTGAAGTGCTGTCCACGGCCGCCGTCGCAGAATTTGGAAGGT
GGCGGCTGTTGGCCTGAGGCAGTTGCAGCGGTGGTACAAGGGCGGACGGC
GCGCGACGTAGGGACTCAGAGAGGTCGAGCCCGGCATTCAAAATCGCCTC
GTTGTCGCTATCGCCGCCGCCATTTCCACCGCCTCCGCCTCTGGAGAGTG
CGCGCCTCCTCCTGCTGGAATCACTGCTGCTGCTGCTGCCACCGCCGCTG
TTTCCTGCTGCTGCCGTCGTCGGCAGAAGATCTTGTGCCCTCTCCCCGGC
CGCCGTCCCTCCAGCAGCCTCCTGCGGCCGCGCTCGTCGAGGCCGAGAAG
GGACGCGCAGACCCCGACCGCGCGCCAGCGGACGAGGGCGTCCGGATGCC
GGCACAGGTCGAAGAAGGGAGACCAGTTCCACGGACCGCCCGCCGCCGCG
GTGAGGCTTGGCCCAACGGCGGCGCACGAGAGGAGCTTGTGGGAGGAGGA
GGAGGGCGGGGGAGGAAGGAGCATCGGCGCGCAATGCGTGGTGGCCTTGG
TTTCGGCCTTCGCTTTGGTCGTGCGCCGAGCTGCTGGTTCGCATCTCGCC
TGAAGTGCTGTCCACGGCCGCCGTCGCAGAATTTGGAAGGTGGCGGCTGT
TGGCCTGAGGCAGTTGCAGCGGTGGTACAAGGGCGGACGGCGCGCGACGT
AGGGACTCAGAGAGGTCGAGCCCGGCATTCAAAATCGCCTCGTTGTCGCT
ATCGCCGCCGCCATTTCCACCGCCTCCGCCTCTGGAGAGTGCGCGCCTCC
TCCTGCTGGAATCACTGCTGCTGCTGCTGCCACCGCCGCTGTTTCCTGCT
GCTGCCGTCGTCGGCAGAAGATCTTGTGCCCTCTCCCCGGCCGCCGTCCC
TCCAGCAGCCTCCTGCGGCCGCGCTCGTCGAGGCCGAGAAGGGACGCGCA
GACCCCGACCGCGCGCCAGCGGACGAGGGCGTCCGGATGCCGGCACAGGT
CGAAGAAGGGAGACCAGTTCCACGGACCGCCCGCCGCCGCGGTGAGGCTT
GGCCCAACGGCGGCGCACGAGAGGAGCTTGTG
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