mRNA_P-fluviatile_contig83.14863.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig83.14863.1
Unique NamemRNA_P-fluviatile_contig83.14863.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig83.14863.1 vs. uniprot
Match: A0A6H5JK39_9PHAE (Cyclin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JK39_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 8.090e-5
Identity = 28/34 (82.35%), Postives = 28/34 (82.35%), Query Frame = -1 
Query:   44 LENRTMA*NQLVGVTAMLLASKYEEIYPPQIRDL 145
            LE  T    QLVGVTAMLLASKYEEIYPPQIRDL
Sbjct:  227 LETVTRQNLQLVGVTAMLLASKYEEIYPPQIRDL 260
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig83.14863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JK39_9PHAE8.090e-582.35Cyclin N-terminal domain-containing protein n=2 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig83contigP-fluviatile_contig83:389761..394843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-09_004760.1
Exons2
Model size979
Cds size489
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig83.14863.1prot_P-fluviatile_contig83.14863.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig83 390123..390611 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817287.4270673-UTR-P-fluviatile_contig83:389760..3901221622817287.4270673-UTR-P-fluviatile_contig83:389760..390122Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 389761..390122 -
1693571950.1625295-UTR-P-fluviatile_contig83:389760..3901221693571950.1625295-UTR-P-fluviatile_contig83:389760..390122Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 389761..390122 -
1622817287.450081-UTR-P-fluviatile_contig83:390611..3906931622817287.450081-UTR-P-fluviatile_contig83:390611..390693Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 390612..390693 -
1693571950.1896396-UTR-P-fluviatile_contig83:390611..3906931693571950.1896396-UTR-P-fluviatile_contig83:390611..390693Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 390612..390693 -
1622817287.4643192-UTR-P-fluviatile_contig83:394797..3948431622817287.4643192-UTR-P-fluviatile_contig83:394797..394843Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 394798..394843 -
1693571950.2005541-UTR-P-fluviatile_contig83:394797..3948431693571950.2005541-UTR-P-fluviatile_contig83:394797..394843Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 394798..394843 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817287.4399083-CDS-P-fluviatile_contig83:390122..3906111622817287.4399083-CDS-P-fluviatile_contig83:390122..390611Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 390123..390611 -
1693571950.1788867-CDS-P-fluviatile_contig83:390122..3906111693571950.1788867-CDS-P-fluviatile_contig83:390122..390611Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 390123..390611 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig83.14863.1

>prot_P-fluviatile_contig83.14863.1 ID=prot_P-fluviatile_contig83.14863.1|Name=mRNA_P-fluviatile_contig83.14863.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=163bp
MVLFSNANYILTTPMNFNTGTTKYMKHSAKHWREEKRIEDAGGRFLWDNA
GPSSMQGVKDDLFGFVYTARGQNMIELRFIVEVLTTGHRREAWDADIPHH
SDRNAIVLSPPIGWITTNELVDGTAHMQSGSAPYNPRTGKMFVQSGTRVY
KWNHQIAIRPYV*
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mRNA from alignment at P-fluviatile_contig83:389761..394843-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig83.14863.1 ID=mRNA_P-fluviatile_contig83.14863.1|Name=mRNA_P-fluviatile_contig83.14863.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5083bp|location=Sequence derived from alignment at P-fluviatile_contig83:389761..394843- (Porterinema fluviatile SAG_2381)
GCCCCCCTTTGTTCATTCCCTTCCTCTCGCTTCAGCCAAGACAAAGGTGA
GGGAAAAAAATTGGCCGGCGGTAAAGGTGAATGCATTGTACACATACACA
TATATATTGGTGAGTGAACGGGACTTCCGGGAAAGCGCCTTTTGTAGCTG
TTGGTGTTATTTAGAAGGAACTACCCACTAGACTACGCTGACCGAGTAGT
CTTCTAGTGGGTAGTTCCTTCTAACTAACAAAAGAAGAACTTTTGAGCTC
GATATCTCTCACTCTCGGTGCATTCTCCGGGTTTCCCCTCGCCAGACGCC
ACTCCAGGGACACGCTGTATAGCAAGCGCTTATGGCTGAGCAGAGGGAAA
AACACGGCGGCCCGCACGCTCGTGCAAGTTCCGCCGCTCCCCTAAAAAAA
CAATAAAACGCACCTTCATTCCCGCTCTCGAGACAAGCCCTCGCCCGTGA
AGCTCCGAGGATCTGCTGGCACCGAGGCTGAACGCCACCTCTCCCTGCTC
CCTGGCCCTGGAAACGGCCCCGAGCCCTCCCTTTGACGTGCGCGAGCAGG
CGGACCCGAGGGTGTCCCCCAACCCTCCGCTCCTCCTGCCAAGGAGAATG
ACGGCGTGCGTCCCCAGCTGGTTGATTCTCGGCTTAAAATTTCAAAATTT
CGTTGTTCGGGAAACCAGTTTTGGCTAGGACTCGGACTGCTGCACGGACA
GCAGTACAGCATCCAGCGATCCCGGGGCAGAGGGAGATTCTTCTGGCGAG
AGAGAGCTTCATGCAGCAGTCCACGGGATGCACGAGTGAATTTCTCGGTG
TTGTCGAATTGTTGAATCGATTCCCCGAGAAGACTACTGTATCCATTGTT
GTCGGCCGTGCTGGTTCGGACTTCGCCGACGGTTCCCGCACAGCAGTATT
CCCGAGAGCGCGAAAGTCAGGCCGCCTCGCTCTGTCTGTCTGCCTGTCCG
TCCGTCTGTCTGTCTGGAAAATCACACCGATCGCCGGGACGAACGCGGGG
AAAGCCACCGGATACAAGCGAGGCCTACCCGACCAAAACTCCGTGTGTTT
TTGTGTTCCTTCTGGCGAGAAGGTACATACAGATAATAATACTTTGTACG
AGAGCTGTCATGGTATTCGTACTGATTATTGATTGATTCATGGCTGGGAT
GCGAACCAACAAGATGATTCCACGACGAATGAGTACCATACGAACCTGCG
AACCTGACTCTTTACATTGGAACGAGTCAGCCCAAGTCAGCGTGAAAAAA
CACTTGCCCACTCGGCCCCGCTCTCAGTCAGTCTTATCCTCTCCCACATC
AACAGAGTAAAAGGCGAGTGATTATTCCACTGATTCAATGTTGTTGCGGA
ACCAGTTTTTGTTCTACATCAGTGATTGCGGCGATTGGTTGATTGATGGC
TACGATGCGAACCGACGACTCCATAGACGCACGCGTGACCGGCGCGAACC
CTGGAGTAGACGCGTGAACGGCGCGAACCCTGAGGTAGACGCGAGTACGT
GTAATGACTCCCAACAATCCAGGATTTTTCGGAGTCATTTTCGCGTTCCC
GTCAGGCGATCCCCTCCACTCTTTTCACGCCCCCCTTTGTTCATTCCCTT
CCTCTCGCTTCAGCCAAGACAGAGGTGAGGGATAAAAATTGGCCGGCGGT
CAAGGTGCATGCATTGTACACATACACATATATATTGGTGAGTGAACGGG
ACTTCCGGGAAAGCGCCTTTTGTAGCTGTTGGTGTTAGTTCCTTCTAACT
AACAAAAGAAGAACTTTTGAGCTCGATATCTCTCACTCTCGGTGCATTCT
CCGGGTTTCCCCTCGCCAGACGCCACTCCTGAGTCCTATTAATAGGCCTG
AACCAACTAACCTCTTTTTCACACAGAAAAAGACGCGGTCGCACCGAGAA
TCGAACTCGCGAACTTCCTTTGTTAGTTAGAAGGAACTACCCACTGGACT
ACTCAGTCAGCGAGGGGTTAGCGAGGGGAAACGCGGAGAATGCACCGAGA
GTGAGAGATATCGAGCTCAAAAGTTCTTCTTTGTTAGTTCCTTCTAACTA
AAAGTTGGGTGAGGTGTGACGTGGACATACTTGATGTTGATAGGGGATTT
TTAAAATCTTGCTCTATCGAACCATTTTGTCCTGTATGTTGTCTACCTCC
GTCGAGCGTTCAGCAAATGACTCGTGCTCACTTGACCCTGCTGGTTTTCA
TCGGCGGTCTTGGGTTTCGGGGATGTTTTCGGCCTGCGGTGAGCTGGTCA
GTCCATTGACTCGGTACCAGAAGCACCGCGCGATGCATATCCTCCGGTCG
TTGCGCTGCTCGGTCGCGAGGCAGTGCCGGGTTCCCCTCTCTGTTTGTTT
GTTGCCGTACACAGACACACACTTCAAATCCTACACACACACACGCAGCC
CCCGAAGGGCACACACAGATTGTACCCATATCCAAAGCACCACAAACAAG
ACGCAATCGTCCAATGTTTACACGAGACATTTAACCGGCGAAGGCGGCGC
AAGCCGACACAACCCTAAGCCAACCCACCTTCTCCCTCGTGTCGCGATCG
CTGGACGCTCGGTGAAATTCCCGTAACACAGAAAAAAATTATAACCTAGC
CCAAATATCCGGACCGCTCCCCCACTCTCCCCAACACTTGTTCGGCTTCA
CCGGTGGCGAGATGTATTTGACGCTGGACGAATCCGTCAAGACGACTATG
ACGCACCCTCAGGTGCACTGGATACGGCGCGCCGTGTTCCTCTCCATTCT
CCTCAATGGATCAGGCGATTGTCCGGCCAAGCGAGCCGTGCTAGACGCTA
CCTTCCTGATCCTAAAAACTAACTAACTGGCGTGCGCCCCTCGCAGACTG
GGTTGCCCTCTGTGTTCGGTTACACGCAACTTCTCGCTGCGTGGCGGCGC
TCGCTGACGATGATGATTGAGATGTACACGGAACGCAACACGCGTGTCGC
CGCCCAGGACGGACAGGCCACCTGTCACATATGCAGGGAGAACGAACCAG
ACTTCTTGCTTGTGCACGGGGACGGGGGGTCGGCTCACGGTGGGATTTGT
GGACGCTGTGCACTGACAGTGATGATAGCGGACACGATTCCTAGCTGCCC
CTTTTGTAACCAGCGAGTGAGCATGATTTGCAACAGGTCAAGCCTGAGCG
CCAGCAATCTGGACGTGTACAATAACCCCTGGGAGCTTTTCTTAGCGTGA
ACATAGAGTAGCTTTCAAGCTTCAGGTGTGTGTGTCTCACCCAGAATACA
GGAGACGCGATCGTCCGCGGCGATGGACAATCCCGTCTCTCACAACGTTT
GAAGGGGTACAGTAGTGTGTGGTACTTGTATCATTTGAAAGGCTCGCTGG
GAATTGTCGCGTTGGTTAGGTAGGTAGGTACCTTTTAAGCTCACTCTGCG
ATTGTCGGATGGCGAATGAAAGAACAGTAATGAGGCAATGCACGAATTTA
AAATCTGGGAGAATCTCTCAACGGTGTGGAACAGAGCTCGGAATACGGGA
ATGGAACCTTCGAAGCCTCAAGTTGCTCGGGGAGCTGTGTGTAGACCGTG
TGTGACGCAATCGTCCGTCGTGGTGGACAATCTCGTCTCTCGCCCCCTCT
CGCGTGAATGAAATGTTTGAAGCACAAACAATCTTTCACCGAACCGCTTG
GGTACCAACCGTGTCCCACCTCTTCCGTCCTGTTGTTTAGAGAACCATCC
TCCACCAAAGTTGGGACAACCCCCTCAAACTACCGTGCCCCACCTCTCTT
CCGTCCTGTACTATGGACATGTCCTTTCTTAGTCACAGTCTTGGTGCGAC
CAGCTGAAGCCCCAAGTCGCATTCCACCTTTTCCGCGTCCGCACTTTTTT
TATTTTTGTTGTCTTAAAGTTTTTGATTTCGGAGTGGGAAGAAAATGAGA
GTGAACGGAGTAGGCGAGGGAGTATCGGGGATTTTGGATCTTTAATGTAA
ACAAATTCCGACCTGTTCCGATTCGGGAACGGTAAATTTTTTCAAATTTC
GTGAACCCGAAAGCGAACCCGAACCCGAACCCGAACCCGAACGCGAACCC
GAAGGCGCATACCCTTTAATGGTTTTAAATAACCTTGCATTCACCGAGCC
CCCCCCTATGTGGTCGCCGCCCCCACGTAATCACTATTTCGAACTACCAG
GTCCCGGATCTGCGGCGGGTAGATCTCCTCGTACTTGGACGCCAGCAGCA
TCGCCGTCACCCCGACCAGCTGATTTTAAGCCATGGTTCTGTTCTCTAAT
GCGAACTATATTCTGACGACTCCCATGAATTTTAACACTGGTACAACGAA
GTACATGAAACATTCCGCGAAGCACTGGCGAGAGGAAAAGCGTATCGAGG
ACGCCGGCGGACGATTTCTTTGGGACAACGCGGGTCCTTCTTCTATGCAG
GGCGTTAAGGATGATTTGTTTGGCTTTGTCTACACGGCAAGGGGCCAGAA
CATGATTGAATTGCGCTTCATCGTTGAAGTTTTGACTACGGGACACCGCC
GTGAAGCTTGGGACGCTGACATCCCTCATCACAGTGATAGGAACGCGATC
GTGCTTTCGCCTCCAATTGGATGGATTACTACGAACGAGCTTGTCGATGG
GACTGCTCACATGCAGTCTGGTAGCGCGCCTTACAACCCCCGGACGGGGA
AGATGTTTGTCCAGAGTGGGACGCGTGTGTACAAGTGGAACCATCAGATT
GCCATCAGGCCGTATGTGTGATGTGTTGATTTCAAGTGTTTTGTTTGGGA
TGATGAAGTTGAACTTCAATAATTAATGATATGAATAAGCTTCAACGCTT
TTTGCTAAATGCCTATGTGGCCACTGGTTATAAAACCTGTGCTGAAAAGG
GATTTGGTACCTAAAATGACGCTTTTATGGGGGGAAAAGTAAAGTGTGAA
GCTTCTAAGGGGGTTTCCCCCATTGTGTGTAAAAAAGTCCCCTTTAAAAT
GACGACTTTTGTCTGCAATTCAGAAGTTGTCCAAAAGGCTTCGAATTTTT
GAAGAATCCTGCAAAATCAAACCGATGAAGCTTCAACATTTTTTTTCATT
TTTCAAGATTGAATTTCTCAAACTCTGAAGCGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig83:389761..394843-

>mRNA_P-fluviatile_contig83.14863.1 ID=mRNA_P-fluviatile_contig83.14863.1|Name=mRNA_P-fluviatile_contig83.14863.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=978bp|location=Sequence derived from alignment at P-fluviatile_contig83:389761..394843- (Porterinema fluviatile SAG_2381)
ATGGTTCTGTTCTCTAATGCGAACTATATTCTGACGACTCCCATGAATTT
TAACACTGGTACAACGAAGTACATGAAACATTCCGCGAAGCACTGGCGAG
AGGAAAAGCGTATCGAGGACGCCGGCGGACGATTTCTTTGGGACAACGCG
GGTCCTTCTTCTATGCAGGGCGTTAAGGATGATTTGTTTGGCTTTGTCTA
CACGGCAAGGGGCCAGAACATGATTGAATTGCGCTTCATCGTTGAAGTTT
TGACTACGGGACACCGCCGTGAAGCTTGGGACGCTGACATCCCTCATCAC
AGTGATAGGAACGCGATCGTGCTTTCGCCTCCAATTGGATGGATTACTAC
GAACGAGCTTGTCGATGGGACTGCTCACATGCAGTCTGGTAGCGCGCCTT
ACAACCCCCGGACGGGGAAGATGTTTGTCCAGAGTGGGACGCGTGTGTAC
AAGTGGAACCATCAGATTGCCATCAGGCCGTATGTGTGAATGGTTCTGTT
CTCTAATGCGAACTATATTCTGACGACTCCCATGAATTTTAACACTGGTA
CAACGAAGTACATGAAACATTCCGCGAAGCACTGGCGAGAGGAAAAGCGT
ATCGAGGACGCCGGCGGACGATTTCTTTGGGACAACGCGGGTCCTTCTTC
TATGCAGGGCGTTAAGGATGATTTGTTTGGCTTTGTCTACACGGCAAGGG
GCCAGAACATGATTGAATTGCGCTTCATCGTTGAAGTTTTGACTACGGGA
CACCGCCGTGAAGCTTGGGACGCTGACATCCCTCATCACAGTGATAGGAA
CGCGATCGTGCTTTCGCCTCCAATTGGATGGATTACTACGAACGAGCTTG
TCGATGGGACTGCTCACATGCAGTCTGGTAGCGCGCCTTACAACCCCCGG
ACGGGGAAGATGTTTGTCCAGAGTGGGACGCGTGTGTACAAGTGGAACCA
TCAGATTGCCATCAGGCCGTATGTGTGA
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