mRNA_P-fluviatile_contig83.14860.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig83.14860.1
Unique NamemRNA_P-fluviatile_contig83.14860.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig83.14860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig83contigP-fluviatile_contig83:367817..368155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size298
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig83.14860.1prot_P-fluviatile_contig83.14860.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig83 367826..368155 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817283.491984-UTR-P-fluviatile_contig83:367816..3678251622817283.491984-UTR-P-fluviatile_contig83:367816..367825Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 367817..367825 +
1693571934.2682817-UTR-P-fluviatile_contig83:367816..3678251693571934.2682817-UTR-P-fluviatile_contig83:367816..367825Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 367817..367825 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817283.5038605-CDS-P-fluviatile_contig83:367825..3679641622817283.5038605-CDS-P-fluviatile_contig83:367825..367964Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 367826..367964 +
1693571934.278767-CDS-P-fluviatile_contig83:367825..3679641693571934.278767-CDS-P-fluviatile_contig83:367825..367964Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 367826..367964 +
1622817283.5146806-CDS-P-fluviatile_contig83:368006..3681551622817283.5146806-CDS-P-fluviatile_contig83:368006..368155Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 368007..368155 +
1693571934.2876897-CDS-P-fluviatile_contig83:368006..3681551693571934.2876897-CDS-P-fluviatile_contig83:368006..368155Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 368007..368155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig83.14860.1

>prot_P-fluviatile_contig83.14860.1 ID=prot_P-fluviatile_contig83.14860.1|Name=mRNA_P-fluviatile_contig83.14860.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=96bp
MLGADPVCLIAAFSWKARAGGSSRLAPPDSEARTPRCARSRRRHRRRCCC
PHRFRYRSGWRRPRCCRRHRGSCGHRRSRRSRCRRSGWPRHFRHLP
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mRNA from alignment at P-fluviatile_contig83:367817..368155+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig83.14860.1 ID=mRNA_P-fluviatile_contig83.14860.1|Name=mRNA_P-fluviatile_contig83.14860.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=339bp|location=Sequence derived from alignment at P-fluviatile_contig83:367817..368155+ (Porterinema fluviatile SAG_2381)
CCTTTTTGCATGCTGGGTGCCGACCCCGTCTGCCTCATCGCTGCGTTTTC
CTGGAAGGCCCGCGCGGGAGGCTCGTCGAGGTTGGCCCCGCCGGATAGCG
AGGCCCGCACCCCTAGGTGCGCGCGGAGCCGCCGCCGCCACCGCCGCCGC
CACCACCGCCGCGGCCGCCGCGGCCGCCGCCGCCGCCGCTGCTGCTGCTG
CCCCCACCGTTTTCGTTACCGCTCTGGCTGGCGCCGCCCCCGCTGCTGCC
GGCGCCACCGCGGTAGTTGCGGCCACCGCCGCTCGAGGCGGTCGCGTTGC
CGTCGTTCCGGTTGGCCCCGCCATTTCCGCCACCTCCCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig83:367817..368155+

>mRNA_P-fluviatile_contig83.14860.1 ID=mRNA_P-fluviatile_contig83.14860.1|Name=mRNA_P-fluviatile_contig83.14860.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=576bp|location=Sequence derived from alignment at P-fluviatile_contig83:367817..368155+ (Porterinema fluviatile SAG_2381)
ATGCTGGGTGCCGACCCCGTCTGCCTCATCGCTGCGTTTTCCTGGAAGGC
CCGCGCGGGAGGCTCGTCGAGGTTGGCCCCGCCGGATAGCGAGGCCCGCA
CCCCTAGGTGCGCGCGGAGCCGCCGCCGCCACCGCCGCCATGCTGGGTGC
CGACCCCGTCTGCCTCATCGCTGCGTTTTCCTGGAAGGCCCGCGCGGGAG
GCTCGTCGAGGTTGGCCCCGCCGGATAGCGAGGCCCGCACCCCTAGGTGC
GCGCGGAGCCGCCGCCGCCACCGCCGCCGCTGCTGCTGCCCCCACCGTTT
TCGTTACCGCTCTGGCTGGCGCCGCCCCCGCTGCTGCCGGCGCCACCGCG
GTAGTTGCGGCCACCGCCGCTCGAGGCGGTCGCGTTGCCGTCGTTCCGGT
TGGCCCCGCCATTTCCGCCACCTCCCCGCTGCTGCTGCCCCCACCGTTTT
CGTTACCGCTCTGGCTGGCGCCGCCCCCGCTGCTGCCGGCGCCACCGCGG
TAGTTGCGGCCACCGCCGCTCGAGGCGGTCGCGTTGCCGTCGTTCCGGTT
GGCCCCGCCATTTCCGCCACCTCCCC
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