mRNA_P-fluviatile_contig83.14859.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig83.14859.1
Unique NamemRNA_P-fluviatile_contig83.14859.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig83.14859.1 vs. uniprot
Match: D7G7F7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7F7_ECTSI)

HSP 1 Score: 246 bits (629), Expect = 2.270e-78
Identity = 131/259 (50.58%), Postives = 169/259 (65.25%), Query Frame = 1 
Query:    1 MRHNKTPSTPRRKLLRPGVCFKASRVACERNETGTIRVSAEEVLTVLGQDENPSEPCVNVEARHVRRNAASYERRRVFTSSPFKVTIPPRHLEIVRTENGTRIVDVVKGFPAKMSFPPMARVPGMGFRETNAAEVIFGLDPSLG--HPWVTPVAFRLIKLMRTQVTQAGGVFVADFDTSESGWAVFRSIYVSPAPSKSLYVQACRVKPKVTAFFYGSGPSHVVEPLCLCGGRVYRDDFSPTMADLKDPVVFKSIRSILD 771
            M  +K P   RR  L+PG+C KA R+ CER+  GT+ V A EV TV+G+D+  SE  +N +    RR+  SYERRR++  S F +  P + L+ + TE   +I+ V         FPP+ + PG GFRETNA EVIFG+DPS G   PWVTPVAFRLIK +  QVT AGGVF AD+D S+SGWA+F +IY+ PAP  ++YVQA RV+PK T     SG +HV  PL   GGR++  DFSP   D+ DPVVFK IR +L+
Sbjct:    1 MSESKAPLRRRRSKLKPGMCLKAFRLECERDARGTVNVEAHEVHTVIGEDDKFSESYINPDDGFFRRDPLSYERRRIYERSSFNIQPPRQRLKALETETDAQIIHVSDEPLEPKRFPPLRKTPGEGFRETNATEVIFGVDPSHGCPRPWVTPVAFRLIKEVWEQVTNAGGVFTADYDLSKSGWAMFHTIYICPAPGTAMYVQAFRVEPK-TVQCCSSGWNHVDRPLFRSGGRLFNADFSPINVDVLDPVVFKPIRRLLN 258
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig83.14859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7F7_ECTSI2.270e-7850.58Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig83contigP-fluviatile_contig83:361380..362463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_000090.1
Exons2
Model size771
Cds size771
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817287.3094215-CDS-P-fluviatile_contig83:361379..3618501622817287.3094215-CDS-P-fluviatile_contig83:361379..361850Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 361380..361850 +
1693571950.0949554-CDS-P-fluviatile_contig83:361379..3618501693571950.0949554-CDS-P-fluviatile_contig83:361379..361850Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 361380..361850 +
1622817287.323585-CDS-P-fluviatile_contig83:362163..3624631622817287.323585-CDS-P-fluviatile_contig83:362163..362463Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 362164..362463 +
1693571950.1047854-CDS-P-fluviatile_contig83:362163..3624631693571950.1047854-CDS-P-fluviatile_contig83:362163..362463Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 362164..362463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig83.14859.1prot_P-fluviatile_contig83.14859.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig83 361380..362463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig83.14859.1

>prot_P-fluviatile_contig83.14859.1 ID=prot_P-fluviatile_contig83.14859.1|Name=mRNA_P-fluviatile_contig83.14859.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=257bp
MRHNKTPSTPRRKLLRPGVCFKASRVACERNETGTIRVSAEEVLTVLGQD
ENPSEPCVNVEARHVRRNAASYERRRVFTSSPFKVTIPPRHLEIVRTENG
TRIVDVVKGFPAKMSFPPMARVPGMGFRETNAAEVIFGLDPSLGHPWVTP
VAFRLIKLMRTQVTQAGGVFVADFDTSESGWAVFRSIYVSPAPSKSLYVQ
ACRVKPKVTAFFYGSGPSHVVEPLCLCGGRVYRDDFSPTMADLKDPVVFK
SIRSILD
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mRNA from alignment at P-fluviatile_contig83:361380..362463+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig83.14859.1 ID=mRNA_P-fluviatile_contig83.14859.1|Name=mRNA_P-fluviatile_contig83.14859.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1084bp|location=Sequence derived from alignment at P-fluviatile_contig83:361380..362463+ (Porterinema fluviatile SAG_2381)
ATGCGACACAACAAAACGCCATCGACTCCGAGACGAAAACTGTTAAGACC
GGGGGTGTGTTTCAAGGCTTCAAGGGTGGCGTGCGAGCGGAACGAGACGG
GGACCATTCGCGTCAGCGCGGAAGAAGTTCTGACGGTTTTGGGGCAGGAC
GAAAATCCCTCAGAGCCGTGCGTGAACGTGGAAGCGCGACACGTGCGGCG
AAACGCGGCTTCTTACGAAAGGAGGAGAGTTTTCACGTCGTCGCCGTTCA
AAGTAACAATTCCACCTAGGCATTTGGAGATCGTTCGGACAGAAAATGGG
ACGCGGATCGTCGACGTCGTGAAGGGATTCCCGGCGAAGATGTCGTTTCC
ACCCATGGCACGAGTCCCTGGTATGGGATTTCGAGAGACTAACGCGGCCG
AGGTGATTTTCGGACTTGATCCTAGCCTGGGTCACCCCTGGGTCACTCCA
GTCGCCTTCCGTCTCATCAAGGTCAGTTTCAGCGTTATTGGGGAATCTTG
ATTGTGAGCACGGGAAAAAGGTTACCCTTACAAGAGTGTTGTTTCACGGC
AGATCTGTATCTTCATGATTAAGATCTCCGACACCGTTGCCCTTTACGGC
TGCGATCCACGGCAGATCAATGCGATCGCTCATTGAATGCGATCTAAGTT
GATATCGAAGCGAAAAATTTCCTGCAGCAGATGTCACTTCGTGGGCCGCC
GATAGGGGCGTATCGCTTACCGTCGCCTTCGACCTCTGCGCGCCCTGCCG
TCGCTGCTTTCGTCTTTGCTATTTCCTCACCAAGCTCATGAGGACGCAAG
TTACTCAAGCGGGCGGCGTCTTCGTCGCAGATTTCGACACCAGTGAATCG
GGATGGGCTGTGTTCCGAAGTATATACGTCAGTCCGGCGCCATCCAAGTC
GTTGTACGTGCAAGCATGCCGGGTTAAGCCGAAGGTCACCGCTTTTTTTT
ACGGATCAGGCCCGAGCCATGTGGTTGAGCCGCTGTGCCTCTGCGGTGGA
CGAGTATACAGAGACGACTTTTCACCGACGATGGCAGATTTGAAAGATCC
AGTAGTTTTCAAATCTATTCGGAGTATTCTCGAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig83:361380..362463+

>mRNA_P-fluviatile_contig83.14859.1 ID=mRNA_P-fluviatile_contig83.14859.1|Name=mRNA_P-fluviatile_contig83.14859.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1542bp|location=Sequence derived from alignment at P-fluviatile_contig83:361380..362463+ (Porterinema fluviatile SAG_2381)
ATGCGACACAACAAAACGCCATCGACTCCGAGACGAAAACTGTTAAGACC
GGGGGTGTGTTTCAAGGCTTCAAGGGTGGCGTGCGAGCGGAACGAGACGG
GGACCATTCGCGTCAGCGCGGAAGAAGTTCTGACGGTTTTGGGGCAGGAC
GAAAATCCCTCAGAGCCGTGCGTGAACGTGGAAGCGCGACACGTGCGGCG
AAACGCGGCTTCTTACGAAAGGAGGAGAGTTTTCACGTCGTCGCCGTTCA
AAGTAACAATTCCACCTAGGCATTTGGAGATCGTTCGGACAGAAAATGGG
ACGCGGATCGTCGACGTCGTGAAGGGATTCCCGGCGAAGATGTCGTTTCC
ACCCATGGCACGAGTCCCTGGTATGGGATTTCGAGAGACTAACGCGGCCG
AGGTGATTTTCGGACTTGATCCTAGCCTGGGTCACCCCTGGGTCACTCCA
GTCGCCTTCCGTCTCATCAAGATGCGACACAACAAAACGCCATCGACTCC
GAGACGAAAACTGTTAAGACCGGGGGTGTGTTTCAAGGCTTCAAGGGTGG
CGTGCGAGCGGAACGAGACGGGGACCATTCGCGTCAGCGCGGAAGAAGTT
CTGACGGTTTTGGGGCAGGACGAAAATCCCTCAGAGCCGTGCGTGAACGT
GGAAGCGCGACACGTGCGGCGAAACGCGGCTTCTTACGAAAGGAGGAGAG
TTTTCACGTCGTCGCCGTTCAAAGTAACAATTCCACCTAGGCATTTGGAG
ATCGTTCGGACAGAAAATGGGACGCGGATCGTCGACGTCGTGAAGGGATT
CCCGGCGAAGATGTCGTTTCCACCCATGGCACGAGTCCCTGGTATGGGAT
TTCGAGAGACTAACGCGGCCGAGGTGATTTTCGGACTTGATCCTAGCCTG
GGTCACCCCTGGGTCACTCCAGTCGCCTTCCGTCTCATCAAGCTCATGAG
GACGCAAGTTACTCAAGCGGGCGGCGTCTTCGTCGCAGATTTCGACACCA
GTGAATCGGGATGGGCTGTGTTCCGAAGTATATACGTCAGTCCGGCGCCA
TCCAAGTCGTTGTACGTGCAAGCATGCCGGGTTAAGCCGAAGGTCACCGC
TTTTTTTTACGGATCAGGCCCGAGCCATGTGGTTGAGCCGCTGTGCCTCT
GCGGTGGACGAGTATACAGAGACGACTTTTCACCGACGATGGCAGATTTG
AAAGATCCAGTAGTTTTCAAATCTATTCGGAGTATTCTCGACCTCATGAG
GACGCAAGTTACTCAAGCGGGCGGCGTCTTCGTCGCAGATTTCGACACCA
GTGAATCGGGATGGGCTGTGTTCCGAAGTATATACGTCAGTCCGGCGCCA
TCCAAGTCGTTGTACGTGCAAGCATGCCGGGTTAAGCCGAAGGTCACCGC
TTTTTTTTACGGATCAGGCCCGAGCCATGTGGTTGAGCCGCTGTGCCTCT
GCGGTGGACGAGTATACAGAGACGACTTTTCACCGACGATGGCAGATTTG
AAAGATCCAGTAGTTTTCAAATCTATTCGGAGTATTCTCGAC
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