mRNA_P-fluviatile_contig83.14853.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig83.14853.1
Unique NamemRNA_P-fluviatile_contig83.14853.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig83.14853.1 vs. uniprot
Match: A0A6H5JIJ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIJ6_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.380e-31
Identity = 63/86 (73.26%), Postives = 77/86 (89.53%), Query Frame = 1 
Query:   19 MQKQELGGGLEVLEADLAETENSVYHLVRSNVELAQFLNDTPGDVDLQQALEENKLVLVNKRHRIKALRNALADLKAQRPHLAPAS 276
            M+K+E+ GGLEV+EADLAETENS+YHLVRSNVELAQFLN+ PGD DL+QA+EENK VLV +RHR+K LR A++DLK QRPH+A A+
Sbjct:    1 MEKKEMEGGLEVMEADLAETENSIYHLVRSNVELAQFLNEAPGDEDLEQAIEENKAVLVRRRHRVKTLRLAISDLKTQRPHMATAA 86
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig83.14853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIJ6_9PHAE2.380e-3173.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig83contigP-fluviatile_contig83:276015..278933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1398
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig83.14853.1prot_P-fluviatile_contig83.14853.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig83 276033..277892 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817286.2934058-UTR-P-fluviatile_contig83:276014..2760321622817286.2934058-UTR-P-fluviatile_contig83:276014..276032Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 276015..276032 +
1693571948.7740262-UTR-P-fluviatile_contig83:276014..2760321693571948.7740262-UTR-P-fluviatile_contig83:276014..276032Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 276015..276032 +
1622817286.3259819-UTR-P-fluviatile_contig83:277892..2789331622817286.3259819-UTR-P-fluviatile_contig83:277892..278933Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 277893..278933 +
1693571949.0796616-UTR-P-fluviatile_contig83:277892..2789331693571949.0796616-UTR-P-fluviatile_contig83:277892..278933Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 277893..278933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817286.3046823-CDS-P-fluviatile_contig83:276032..2761401622817286.3046823-CDS-P-fluviatile_contig83:276032..276140Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 276033..276140 +
1693571948.7891533-CDS-P-fluviatile_contig83:276032..2761401693571948.7891533-CDS-P-fluviatile_contig83:276032..276140Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 276033..276140 +
1622817286.3158174-CDS-P-fluviatile_contig83:277661..2778921622817286.3158174-CDS-P-fluviatile_contig83:277661..277892Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 277662..277892 +
1693571948.8027105-CDS-P-fluviatile_contig83:277661..2778921693571948.8027105-CDS-P-fluviatile_contig83:277661..277892Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 277662..277892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig83.14853.1

>prot_P-fluviatile_contig83.14853.1 ID=prot_P-fluviatile_contig83.14853.1|Name=mRNA_P-fluviatile_contig83.14853.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=113bp
MQKQELGGGLEVLEADLAETENSVYHLVRSNVELAQFLNDTPGDVDLQQA
LEENKLVLVNKRHRIKALRNALADLKAQRPHLAPASGRRRRPRLLPGWAA
LNPRRSFNYQPR*
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mRNA from alignment at P-fluviatile_contig83:276015..278933+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig83.14853.1 ID=mRNA_P-fluviatile_contig83.14853.1|Name=mRNA_P-fluviatile_contig83.14853.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2919bp|location=Sequence derived from alignment at P-fluviatile_contig83:276015..278933+ (Porterinema fluviatile SAG_2381)
AGGACAAGACCGAGAGCGATGCAGAAGCAGGAGCTGGGAGGAGGTCTGGA
GGTTTTGGAAGCAGATCTTGCTGAGACTGAGAACTCCGTCTACCATCTCG
TGCGCTCCAATGTAGAGCTTGCTCAGGTGAGCCATAGCAGCAGTGGCAAA
GGCGCTGCCTTGTTGCTTCTTGCACACAGAGGTTGAGGCCTCACTCCTCC
GGGCTGATCTGCTCGACTTTGAAGCCAAGCGCGGACCGATAAAGAGATGT
CCCTGCGATGCGGTCACTTGTTACAATCCATTCATGGTTTATCAATCGGC
GGTGCGTGAGTCATTCGTGTGCTTGAGCGCTGCAGATGCAACCCCTCCGA
TCTCGTAGCcgATGGACTATTCTAAGGCTGTTGCAGAGCCGCAATCCCGT
GCCGTCTGGATGATCTCCGCAAACTGCACTTCGGGTTCCCTCCTTAGGCT
TCGGGGGGTACATTTTGCCTCCCTTCCACTTATTTCTGTGCTCCGTGCTG
ATGCAACACTCGCGGGCACCTCTGGGACGTTGTATACTACCCCCATCCCA
TTTCAATCTTGACCCCATTCATTTCAAACTGTTCACCCTCCATGCCCTCC
CCCGAAACAGCAGATGTCGTGAGAAATGATCCATGTGATTCTCCCGCAAC
CGAGGTTTCCGCTGATCCCAAAATTGAAACATGAAATGGACACCGACGTC
GATAGGTGTATTTCGGAACACGTGTGTGATACCCCAGGCAGGTGGTGGTA
GAGACTGGCGCCCAACGGGGTTAGCCGATGTGATACCTTGCGGCAGCTGT
ACAGTGCAGCAGCACTTCCGGGCAAAGACAAGGTGTAATGTTTGCACACG
GCGCTTGCGGCCAATACAGACAAATACACTGGTGATGATCCAGACGGAAC
ACGTGCAGTATCCTAGAGAACGCTTGGACACCTGGCGTGCCTGGATGAAC
CAGAGAGATCACAGAGAGTGAGGTCCGAGACCCGACAATGTGAGGACGCT
CGGATGGATACGTTCACTCGGTAATAACACCGTATACGTTATGTACGTTA
CATGCCGAGACGAACTTATTACACCGACGACGCATGCCATAATCACGGAG
AAGACTCGCATGAGCAATGCTGCTGAACAATGCTAAGAAGCCAGGACATG
GCTGACATTTCGTTAAGAAGGTGGTGTGTCGAGTGTCCAAGCACCCTAAC
CAGAATAGGTTTCGCGCTGGCTCTATTTTGATTCTTGATCAGAGATGAAG
AAAAAACCGAGTCCCGTCGTCGGGTGCCAATTTAAATGAAAATACCGCTG
GGGTTTAGCATGGCCAAGGGCGATGTGTGTGCTGGCACGCGTAGAATGTA
CGCTGAGGCGGAGATGATGAAGAAGTCCCGCCGCCATCGCATCTGTCCTC
GGATCATTATAGGGGGCGTTTATGCCTTCGCTGTTCAACGGCCATTCAGG
AGGCCGGGGTCTGTAGCGGACATCACAGCTGTGGTCGCTAACGCAATATT
TCGTTCCAATATGATTCGAGGTTTGGGCCTGGACATGCGACGAGAAAACA
TTGTCGAATCCCGCCACTTGCTCCAATAATGACACACCTCGGGCGCTGAC
ATTAGCATCTGTTGCAACGAACCCTGTGCGCGGTGTCTTCGTCGCAGTTT
CTGAACGATACGCCAGGAGACGTGGACCTTCAGCAAGCCTTGGAGGAAAA
CAAGCTGGTTCTCGTCAACAAGCGACATCGCATCAAGGCCCTCAGAAACG
CTTTGGCCGACCTGAAGGCCCAGCGGCCTCATCTCGCTCCGGCTTCGGGG
CGCCGGAGGCGGCCTCGGCTCCTTCCCGGCTGGGCCGCCCTCAATCCCCG
ACGGAGTTTCAACTATCAGCCTCGATAGTGCTGACCAAGGCCTTGGTGGC
GCCGGAGATGCGACAAGCGCGGCGGCCGATGTGATGCGGTTAGCGGCAGC
GGGATCCATGCCTTCGCCTGCTTGCGAAGCGGCGGGTGGGTCGCCTAGAA
TGAGTGAAGCGGTGAACTCTGTCGCCGGCTTAGCCGCCCCGAGAGATGAC
CCAGAAGTAGGGGATGCGGGAGCCGCAGGGGAGGGCGGGTTTGGCGGAGA
TGGTCACGGGGGGGTGCTGCTCTGATGCGCCCAAGCAGCTTGCTTCCGGT
GCTAGTGCTGCAATGGCTGACACAAGTTGCTTGCTGAATTTATCTGCTTG
CTCATTGAGGAAACGCCGCGTTTGCCAAGATAGGCGGAACGTTTCTGTTG
TGATGACCTCACTTTACAGTTTCCCTGTGTTTTTCCACGTTGTCGAGAAT
TCTGCTGTTGCCGCTGCTGTCTCGAATTCTAATATTCTGGTTTGATACTT
CCCCACCACATTTGGGGGCCATAGCCGGGGTAGGAGAATAGTGAGAGGGG
CCAGCCGGCGGAATCATCGCGCCGGAAGAAGAGGAAGCGCGCGAAGCAGG
GGGCAGGGGGACAACATATACTCGGAGTTTTTTGTATTTACCGTGGCAGA
GGGTGTATGCGATACGTGAGTTATTGGAGGTGTGGTCGTGGACATGAACC
AGAGATGCAAAACCGTGGGCATGCATGATTCGCGAAGTTTCCTTAGGATA
TTCAAAAAATACTCCAGGAGTATAATTCGCGTGTTCTACACGAAGTTCAT
GATCACCACCGGCTTATGCTTCGCAAGTTTGACCATTATCTAGACTGCTC
TCCCGTCTAGTTGCTGATTTGCAGTCTACCGCTTCGTGGAACGGATTTCG
GCGTCATTGACTGGTCGCAGAGTCAGTACCGCATGCGGACGTTGGCCCTC
GACGGGGTCATGTTGTCAATTTCCCTTAAGATTCCGCCAAAGGACCCGCC
TGAAAGGTATTGAGCTCCTTCGAGAAATAGGAAGGCGACGAGAAGAGATG
TAACTAACGGGTCGTCGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig83:276015..278933+

>mRNA_P-fluviatile_contig83.14853.1 ID=mRNA_P-fluviatile_contig83.14853.1|Name=mRNA_P-fluviatile_contig83.14853.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=678bp|location=Sequence derived from alignment at P-fluviatile_contig83:276015..278933+ (Porterinema fluviatile SAG_2381)
ATGCAGAAGCAGGAGCTGGGAGGAGGTCTGGAGGTTTTGGAAGCAGATCT
TGCTGAGACTGAGAACTCCGTCTACCATCTCGTGCGCTCCAATGTAGAGC
TTGCTCAGATGCAGAAGCAGGAGCTGGGAGGAGGTCTGGAGGTTTTGGAA
GCAGATCTTGCTGAGACTGAGAACTCCGTCTACCATCTCGTGCGCTCCAA
TGTAGAGCTTGCTCAGTTTCTGAACGATACGCCAGGAGACGTGGACCTTC
AGCAAGCCTTGGAGGAAAACAAGCTGGTTCTCGTCAACAAGCGACATCGC
ATCAAGGCCCTCAGAAACGCTTTGGCCGACCTGAAGGCCCAGCGGCCTCA
TCTCGCTCCGGCTTCGGGGCGCCGGAGGCGGCCTCGGCTCCTTCCCGGCT
GGGCCGCCCTCAATCCCCGACGGAGTTTCAACTATCAGCCTCGATAGTTT
CTGAACGATACGCCAGGAGACGTGGACCTTCAGCAAGCCTTGGAGGAAAA
CAAGCTGGTTCTCGTCAACAAGCGACATCGCATCAAGGCCCTCAGAAACG
CTTTGGCCGACCTGAAGGCCCAGCGGCCTCATCTCGCTCCGGCTTCGGGG
CGCCGGAGGCGGCCTCGGCTCCTTCCCGGCTGGGCCGCCCTCAATCCCCG
ACGGAGTTTCAACTATCAGCCTCGATAG
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