mRNA_P-fluviatile_contig83.14846.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig83.14846.1
Unique NamemRNA_P-fluviatile_contig83.14846.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig83.14846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig83contigP-fluviatile_contig83:181384..182107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size724
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig83.14846.1prot_P-fluviatile_contig83.14846.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig83 181409..181786 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817283.6482744-UTR-P-fluviatile_contig83:181383..1814081622817283.6482744-UTR-P-fluviatile_contig83:181383..181408Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 181384..181408 +
1693571934.353606-UTR-P-fluviatile_contig83:181383..1814081693571934.353606-UTR-P-fluviatile_contig83:181383..181408Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 181384..181408 +
1622817283.6762602-UTR-P-fluviatile_contig83:181786..1821071622817283.6762602-UTR-P-fluviatile_contig83:181786..182107Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 181787..182107 +
1693571934.3803377-UTR-P-fluviatile_contig83:181786..1821071693571934.3803377-UTR-P-fluviatile_contig83:181786..182107Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 181787..182107 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817283.664245-CDS-P-fluviatile_contig83:181408..1817861622817283.664245-CDS-P-fluviatile_contig83:181408..181786Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 181409..181786 +
1693571934.3697686-CDS-P-fluviatile_contig83:181408..1817861693571934.3697686-CDS-P-fluviatile_contig83:181408..181786Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 181409..181786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig83.14846.1

>prot_P-fluviatile_contig83.14846.1 ID=prot_P-fluviatile_contig83.14846.1|Name=mRNA_P-fluviatile_contig83.14846.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=126bp
MLWASVRVFVFPSRPLTVPSENCGLLLSFTHFTRISIFTLHNKDRKEKTC
ACMENPRPIWKKRRTVFSGILRYRPKELASFNGQQTTKPGEFSRIIPHSL
PTRMATAKARYGPRDDPRATSKPQL*
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mRNA from alignment at P-fluviatile_contig83:181384..182107+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig83.14846.1 ID=mRNA_P-fluviatile_contig83.14846.1|Name=mRNA_P-fluviatile_contig83.14846.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=724bp|location=Sequence derived from alignment at P-fluviatile_contig83:181384..182107+ (Porterinema fluviatile SAG_2381)
TACCCGCCGTCACACGATTGCGACAATGCTGTGGGCTTCGGTCCGTGTGT
TCGTTTTCCCCTCGCGGCCGCTGACGGTCCCCTCAGAAAACTGCGGGTTA
CTCCTCTCGTTCACCCACTTCACTCGCATATCAATTTTCACGTTGCACAA
TAAGGACAGAAAAGAAAAAACATGTGCATGTATGGAGAACCCTCGACCGA
TTTGGAAAAAACGGCGCACAGTCTTTTCTGGGATCCTTCGGTATCGACCG
AAAGAATTAGCAAGCTTCAACGGGCAACAAACCACGAAGCCGGGAGAATT
CTCCCGGATTATTCCCCACTCCCTGCCGACTCGGATGGCCACCGCCAAGG
CACGGTACGGACCTAGGGACGATCCGAGAGCGACGTCCAAACCACAGTTA
TGATCGCAACATATGGTGTAGGAGGGGATTTTGTGAGCAATAATACAGCG
CGCTCTCTCTAATCCCGCAAGCGAATTAGCTCAAACCGGTTGCAGCGGTT
TCACGGGATTTGGTAACCGCTATGCAGTGCATTCCGCCAAACATGCAACG
CTAAAAATCGGGAGAACGACCGAGGAAGGCTCACTCGAATTTCGCAGAAA
GGGGGGCACTTGACGGGAGCCGCGGCTGCAAAGTACTTACTCGAATGGCC
TTTTGATTGCGGGTCCCCTCCTTGGCCATGTTCTTGATGTCCTTCTCAAC
CTTCTTCTCAGCCCGCTCGAGGGT
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Coding sequence (CDS) from alignment at P-fluviatile_contig83:181384..182107+

>mRNA_P-fluviatile_contig83.14846.1 ID=mRNA_P-fluviatile_contig83.14846.1|Name=mRNA_P-fluviatile_contig83.14846.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=756bp|location=Sequence derived from alignment at P-fluviatile_contig83:181384..182107+ (Porterinema fluviatile SAG_2381)
ATGCTGTGGGCTTCGGTCCGTGTGTTCGTTTTCCCCTCGCGGCCGCTGAC
GGTCCCCTCAGAAAACTGCGGGTTACTCCTCTCGTTCACCCACTTCACTC
GCATATCAATTTTCACGTTGCACAATAAGGACAGAAAAGAAAAAACATGT
GCATGTATGGAGAACCCTCGACCGATTTGGAAAAAACGGCGCACAGTCTT
TTCTGGGATCCTTCGGTATCGACCGAAAGAATTAGCAAGCTTCAACGGGC
AACAAACCACGAAGCCGGGAGAATTCTCCCGGATTATTCCCCACTCCCTG
CCGACTCGGATGGCCACCGCCAAGGCACGGTACGGACCTAGGGACGATCC
GAGAGCGACGTCCAAACCACAGTTATGAATGCTGTGGGCTTCGGTCCGTG
TGTTCGTTTTCCCCTCGCGGCCGCTGACGGTCCCCTCAGAAAACTGCGGG
TTACTCCTCTCGTTCACCCACTTCACTCGCATATCAATTTTCACGTTGCA
CAATAAGGACAGAAAAGAAAAAACATGTGCATGTATGGAGAACCCTCGAC
CGATTTGGAAAAAACGGCGCACAGTCTTTTCTGGGATCCTTCGGTATCGA
CCGAAAGAATTAGCAAGCTTCAACGGGCAACAAACCACGAAGCCGGGAGA
ATTCTCCCGGATTATTCCCCACTCCCTGCCGACTCGGATGGCCACCGCCA
AGGCACGGTACGGACCTAGGGACGATCCGAGAGCGACGTCCAAACCACAG
TTATGA
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