mRNA_P-fluviatile_contig83.14842.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig83.14842.1
Unique NamemRNA_P-fluviatile_contig83.14842.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig83.14842.1 vs. uniprot
Match: D7G7H0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H0_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 5.730e-5
Identity = 62/165 (37.58%), Postives = 88/165 (53.33%), Query Frame = 3 
Query:    3 RRELARAVSTMKRVGNS--CYGETRRREAAPPQRPSRYGR-GGGEDVD----NARESGAQFERTTTKTARSSERDPLARSCSSP-TISTARVSTAATRSSRDGAGSGGAPSRRELNSDNATAGE----RRKRLLADLKTLRRRVEDAEGLLREVDSSLQAKPKRR 461
            R ELAR V+ ++R+G S   +G      A  P +P+  G   G  D+     +A E G+   R + KT++S      +R  +   T  TAR STA +RSSR  +   G+ +       + +  E    RR RLLA+L+ LRRR+ DAEGLLREVD S   +PK+R
Sbjct:  329 RTELARTVAAVERIGGSRIVHG------AGAPSKPAVGGTPAGANDLSTRKRDAVEGGSCPSRGSIKTSKSRSASGSSRETNPMHTWGTARTSTATSRSSRCPSSRRGSSACNSGRGTSVSGDEPVEMRRARLLAELEVLRRRMHDAEGLLREVDRS---RPKQR 484
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig83.14842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7H0_ECTSI5.730e-537.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig83contigP-fluviatile_contig83:144245..145736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size470
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig83.14842.1prot_P-fluviatile_contig83.14842.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig83 144277..145736 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817284.9288425-UTR-P-fluviatile_contig83:144244..1442761622817284.9288425-UTR-P-fluviatile_contig83:144244..144276Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 144245..144276 +
1693571939.7684467-UTR-P-fluviatile_contig83:144244..1442761693571939.7684467-UTR-P-fluviatile_contig83:144244..144276Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 144245..144276 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817284.9427276-CDS-P-fluviatile_contig83:144276..1445601622817284.9427276-CDS-P-fluviatile_contig83:144276..144560Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 144277..144560 +
1693571939.7850165-CDS-P-fluviatile_contig83:144276..1445601693571939.7850165-CDS-P-fluviatile_contig83:144276..144560Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 144277..144560 +
1622817284.9568634-CDS-P-fluviatile_contig83:145582..1457361622817284.9568634-CDS-P-fluviatile_contig83:145582..145736Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 145583..145736 +
1693571939.7975285-CDS-P-fluviatile_contig83:145582..1457361693571939.7975285-CDS-P-fluviatile_contig83:145582..145736Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 145583..145736 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig83.14842.1

>prot_P-fluviatile_contig83.14842.1 ID=prot_P-fluviatile_contig83.14842.1|Name=mRNA_P-fluviatile_contig83.14842.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=146bp
MKRVGNSCYGETRRREAAPPQRPSRYGRGGGEDVDNARESGAQFERTTTK
TARSSERDPLARSCSSPTISTARVSTAATRSSRDGAGSGGAPSRRELNSD
NATAGERRKRLLADLKTLRRRVEDAEGLLREVDSSLQAKPKRRGR*
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mRNA from alignment at P-fluviatile_contig83:144245..145736+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig83.14842.1 ID=mRNA_P-fluviatile_contig83.14842.1|Name=mRNA_P-fluviatile_contig83.14842.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1492bp|location=Sequence derived from alignment at P-fluviatile_contig83:144245..145736+ (Porterinema fluviatile SAG_2381)
TGCGGCGGGAGCTCGCCCGCGCTGTATCGACAATGAAAAGGGTCGGCAAT
AGCTGCTATGGTGAAACCAGGCGTCGAGAGGCGGCACCACCCCAGCGGCC
GTCACGTTACGGCCGCGGCGGCGGGGAAGATGTAGATAACGCTAGGGAGT
CGGGGGCACAATTCGAGCGGACGACGACAAAAACGGCACGAAGTTCGGAG
AGAGACCCCTTGGCGAGAAGTTGCAGCAGCCCTACCATAAGTACGGCACG
TGTGTCCACGGCGGCCACCCGCTCTTCTCGCGACGGCGCCGGAAGCGGCG
GTGCTCCATCCCGGCGGTGAGTGGATGGCCGAGCTGACGGAGCACAGTGC
AAACGTACGGCGCATGCGCTTGATTTCTTTGACCTTGGAGCGATGATGGC
GCTGATCGTGTTTCGAGACGTTGACTCACGGCCGGGCTTTTATTACGGAG
TGTTTTTTTTCTCCAAGCCTGGAGACCTTCTCTACAAGACGATGGTGTTC
TGAACTTTTTCACGTCCGTCGTTAATTGTTTCTCTTAGCTGATCGTTGCT
GTAAGGTTGGTGGTGATTTAATTTTGGTCGCCGTTGGCTCTCGTCGTTTA
GATTCCAGTTGTGTTCTGGTCACGGTTCTACCGCTTGTGATGGCATGCGG
GTGTGCCAGGCTGGACATCACACAATAGGGTAGTGACAATGATGGTTCCT
TTTCATCTGCTGTTGAACGTTTCAGCAAATGTCTCGGCAGACGATAGACA
GTCCCTACACTTTTGCGAGCTGAAAGGGGACGACATTTCTAGCTCTGCCT
TTTGGCCGAGTCATTCAAGCGCCCCCCCCGTGGCGGAGACGACGCGATCG
GAAAATCACAGCTGAAACATGGCGTCTCGGCCTCTTTCCCAATGCCCGAG
GTTCATCCACGCTTAGTGTATCGGGTCAGACCTGCTGTTCGCAGGTACAT
GAAGGCGCCAGGGCCCTCGGCTGCGACGGACCTGATCCCTCGCTGAGCTG
CTTCGCCTCCGCTTGTAACCTGACAGGCTCCTTCCAAATCCTCCGTTGCG
TCGTTTTTGACCGCACCGATCGATTGACCATTTCGGTTTATCCATCGATT
GATTCCCAGGATGAAGCGCGCTCTCGCGTTTCTTCTCTGCAGTTGTCGCC
TCCCTCCTTCCGCCGCTGGCGTTCGCTTACGGTAGCCTAGTTTGTGGGTG
GGCATGCCAGGATCACCCAAGCGTATCATCTCGTTATCCAAAGTATTTTT
GTTGTCTTTTTTTCCTTGTCTCGCATGATTTGTCACTTCATTCTCTTCAT
AGCTTTCTAATGTTGACTTTGGCAACGGTTCCTTGCAGCGAACTCAACTC
GGACAATGCCACGGCCGGAGAGAGACGCAAACGCCTGCTGGCCGATCTGA
AGACTCTCCGAAGGCGCGTGGAAGACGCTGAAGGCTTGCTTCGTGAGGTC
GACAGCTCTCTGCAGGCGAAGCCGAAGAGACGAGGACGGTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig83:144245..145736+

>mRNA_P-fluviatile_contig83.14842.1 ID=mRNA_P-fluviatile_contig83.14842.1|Name=mRNA_P-fluviatile_contig83.14842.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=876bp|location=Sequence derived from alignment at P-fluviatile_contig83:144245..145736+ (Porterinema fluviatile SAG_2381)
ATGAAAAGGGTCGGCAATAGCTGCTATGGTGAAACCAGGCGTCGAGAGGC
GGCACCACCCCAGCGGCCGTCACGTTACGGCCGCGGCGGCGGGGAAGATG
TAGATAACGCTAGGGAGTCGGGGGCACAATTCGAGCGGACGACGACAAAA
ACGGCACGAAGTTCGGAGAGAGACCCCTTGGCGAGAAGTTGCAGCAGCCC
TACCATAAGTACGGCACGTGTGTCCACGGCGGCCACCCGCTCTTCTCGCG
ACGGCGCCGGAAGCGGCGGTGCTCCATCCCGGCGATGAAAAGGGTCGGCA
ATAGCTGCTATGGTGAAACCAGGCGTCGAGAGGCGGCACCACCCCAGCGG
CCGTCACGTTACGGCCGCGGCGGCGGGGAAGATGTAGATAACGCTAGGGA
GTCGGGGGCACAATTCGAGCGGACGACGACAAAAACGGCACGAAGTTCGG
AGAGAGACCCCTTGGCGAGAAGTTGCAGCAGCCCTACCATAAGTACGGCA
CGTGTGTCCACGGCGGCCACCCGCTCTTCTCGCGACGGCGCCGGAAGCGG
CGGTGCTCCATCCCGGCGCGAACTCAACTCGGACAATGCCACGGCCGGAG
AGAGACGCAAACGCCTGCTGGCCGATCTGAAGACTCTCCGAAGGCGCGTG
GAAGACGCTGAAGGCTTGCTTCGTGAGGTCGACAGCTCTCTGCAGGCGAA
GCCGAAGAGACGAGGACGGTGACGAACTCAACTCGGACAATGCCACGGCC
GGAGAGAGACGCAAACGCCTGCTGGCCGATCTGAAGACTCTCCGAAGGCG
CGTGGAAGACGCTGAAGGCTTGCTTCGTGAGGTCGACAGCTCTCTGCAGG
CGAAGCCGAAGAGACGAGGACGGTGA
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