mRNA_P-fluviatile_contig83.14839.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig83.14839.1
Unique NamemRNA_P-fluviatile_contig83.14839.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig83.14839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig83contigP-fluviatile_contig83:130877..131415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size539
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig83.14839.1prot_P-fluviatile_contig83.14839.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig83 130885..131289 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817283.584727-UTR-P-fluviatile_contig83:130876..1308841622817283.584727-UTR-P-fluviatile_contig83:130876..130884Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 130877..130884 +
1693571934.3216555-UTR-P-fluviatile_contig83:130876..1308841693571934.3216555-UTR-P-fluviatile_contig83:130876..130884Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 130877..130884 +
1622817283.615897-UTR-P-fluviatile_contig83:131289..1314151622817283.615897-UTR-P-fluviatile_contig83:131289..131415Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 131290..131415 +
1693571934.3448644-UTR-P-fluviatile_contig83:131289..1314151693571934.3448644-UTR-P-fluviatile_contig83:131289..131415Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 131290..131415 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817283.598432-CDS-P-fluviatile_contig83:130884..1312891622817283.598432-CDS-P-fluviatile_contig83:130884..131289Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 130885..131289 +
1693571934.3313084-CDS-P-fluviatile_contig83:130884..1312891693571934.3313084-CDS-P-fluviatile_contig83:130884..131289Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 130885..131289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig83.14839.1

>prot_P-fluviatile_contig83.14839.1 ID=prot_P-fluviatile_contig83.14839.1|Name=mRNA_P-fluviatile_contig83.14839.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=135bp
MCYGGVERYTEVFGDFWNLTHGRRHDFSNLFGSTFCLVRFHVGGMLDHAP
LFPVMPPLSHSTNARAGRPLQDGRGASVRRILPRCVCFVCNSTPTTPWPL
SCATNQFTREERQACCGTEVTGEREGNSRGGIIE*
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mRNA from alignment at P-fluviatile_contig83:130877..131415+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig83.14839.1 ID=mRNA_P-fluviatile_contig83.14839.1|Name=mRNA_P-fluviatile_contig83.14839.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=539bp|location=Sequence derived from alignment at P-fluviatile_contig83:130877..131415+ (Porterinema fluviatile SAG_2381)
AACTAAAGATGTGTTACGGGGGGGTTGAAAGGTATACTGAAGTATTTGGA
GACTTCTGGAATCTCACGCATGGTCGGCGACATGACTTTTCAAACCTTTT
TGGGTCCACATTTTGCCTGGTGCGTTTTCACGTGGGTGGAATGTTGGATC
ACGCGCCACTCTTCCCTGTAATGCCGCCCCTCTCCCATAGTACGAACGCC
AGGGCTGGCAGACCACTGCAGGACGGTCGTGGCGCATCGGTGCGGAGGAT
ACTACCACGGTGTGTATGCTTCGTTTGCAATTCCACGCCCACAACCCCTT
GGCCTTTGTCGTGTGCCACGAACCAATTCACACGAGAGGAACGGCAGGCA
TGTTGCGGTACAGAAGTCACGGGGGAAAGGGAAGGCAATAGTCGCGGAGG
TATTATTGAGTAGTCACCGCAAGAAGGTTCAACGACAATGATGCACTGTT
TTGGAGGCAGTGGTCAACATCAGCTAAGGGATAATGCCACGAGATGGGAC
TCGCGGTGCCCCGTCGAACACTGTTTCTTTGCGTCGAGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig83:130877..131415+

>mRNA_P-fluviatile_contig83.14839.1 ID=mRNA_P-fluviatile_contig83.14839.1|Name=mRNA_P-fluviatile_contig83.14839.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=810bp|location=Sequence derived from alignment at P-fluviatile_contig83:130877..131415+ (Porterinema fluviatile SAG_2381)
ATGTGTTACGGGGGGGTTGAAAGGTATACTGAAGTATTTGGAGACTTCTG
GAATCTCACGCATGGTCGGCGACATGACTTTTCAAACCTTTTTGGGTCCA
CATTTTGCCTGGTGCGTTTTCACGTGGGTGGAATGTTGGATCACGCGCCA
CTCTTCCCTGTAATGCCGCCCCTCTCCCATAGTACGAACGCCAGGGCTGG
CAGACCACTGCAGGACGGTCGTGGCGCATCGGTGCGGAGGATACTACCAC
GGTGTGTATGCTTCGTTTGCAATTCCACGCCCACAACCCCTTGGCCTTTG
TCGTGTGCCACGAACCAATTCACACGAGAGGAACGGCAGGCATGTTGCGG
TACAGAAGTCACGGGGGAAAGGGAAGGCAATAGTCGCGGAGGTATTATTG
AGTAGATGTGTTACGGGGGGGTTGAAAGGTATACTGAAGTATTTGGAGAC
TTCTGGAATCTCACGCATGGTCGGCGACATGACTTTTCAAACCTTTTTGG
GTCCACATTTTGCCTGGTGCGTTTTCACGTGGGTGGAATGTTGGATCACG
CGCCACTCTTCCCTGTAATGCCGCCCCTCTCCCATAGTACGAACGCCAGG
GCTGGCAGACCACTGCAGGACGGTCGTGGCGCATCGGTGCGGAGGATACT
ACCACGGTGTGTATGCTTCGTTTGCAATTCCACGCCCACAACCCCTTGGC
CTTTGTCGTGTGCCACGAACCAATTCACACGAGAGGAACGGCAGGCATGT
TGCGGTACAGAAGTCACGGGGGAAAGGGAAGGCAATAGTCGCGGAGGTAT
TATTGAGTAG
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