mRNA_P-fluviatile_contig82.14830.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig82.14830.1
Unique NamemRNA_P-fluviatile_contig82.14830.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig82.14830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig82contigP-fluviatile_contig82:380909..381313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size407
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817279.0039988-UTR-P-fluviatile_contig82:380908..3809951622817279.0039988-UTR-P-fluviatile_contig82:380908..380995Porterinema fluviatile SAG_2381UTRP-fluviatile_contig82 380909..380995 +
1693571888.1880715-UTR-P-fluviatile_contig82:380908..3809951693571888.1880715-UTR-P-fluviatile_contig82:380908..380995Porterinema fluviatile SAG_2381UTRP-fluviatile_contig82 380909..380995 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817279.015318-CDS-P-fluviatile_contig82:380995..3813131622817279.015318-CDS-P-fluviatile_contig82:380995..381313Porterinema fluviatile SAG_2381CDSP-fluviatile_contig82 380996..381313 +
1693571888.2003405-CDS-P-fluviatile_contig82:380995..3813131693571888.2003405-CDS-P-fluviatile_contig82:380995..381313Porterinema fluviatile SAG_2381CDSP-fluviatile_contig82 380996..381313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig82.14830.1prot_P-fluviatile_contig82.14830.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig82 380996..381313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig82.14830.1

>prot_P-fluviatile_contig82.14830.1 ID=prot_P-fluviatile_contig82.14830.1|Name=mRNA_P-fluviatile_contig82.14830.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=106bp
MNKRVVFIPANTFMCMHSRDSTTLSPKPPVLSTSGYKNRRVGGRETEKRG
IVPHDYVFVLAHYRTTQHRKTTKNTYRIWYPYLAPCFLPPRALPKYSAVL
VIHLLA
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mRNA from alignment at P-fluviatile_contig82:380909..381313+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig82.14830.1 ID=mRNA_P-fluviatile_contig82.14830.1|Name=mRNA_P-fluviatile_contig82.14830.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=405bp|location=Sequence derived from alignment at P-fluviatile_contig82:380909..381313+ (Porterinema fluviatile SAG_2381)
CCCAGCTAGAACCAAGACGCCCGACGGTGTATATGCTGCCGTCTGATTGG
TTGGTTTGTTGGTTGGAAAACCGTGCCGCCGGGTCGCATGAACAAACGCG
TCGTTTTCATTCCGGCGAACACATTCATGTGTATGCACTCCCGCGATTCG
ACAACGCTTTCACCGAAACCTCCCGTCCTCTCGACAAGCGGTTACAAAAA
CAGGCGAGTGGGAGGAAGGGAGACGGAGAAAAGAGGTATCGTCCCTCATG
ATTACGTGTTTGTCCTCGCACATTACCGAACAACGCAGCATCGAAAAACG
ACCAAAAACACGTATCGCATTTGGTATCCATATCTTGCGCCTTGCTTCTT
GCCACCGAGAGCCTTGCCGAAATACTCCGCGGTTCTTGTAATCCACCTTC
TGGCA
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Coding sequence (CDS) from alignment at P-fluviatile_contig82:380909..381313+

>mRNA_P-fluviatile_contig82.14830.1 ID=mRNA_P-fluviatile_contig82.14830.1|Name=mRNA_P-fluviatile_contig82.14830.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=636bp|location=Sequence derived from alignment at P-fluviatile_contig82:380909..381313+ (Porterinema fluviatile SAG_2381)
ATGAACAAACGCGTCGTTTTCATTCCGGCGAACACATTCATGTGTATGCA
CTCCCGCGATTCGACAACGCTTTCACCGAAACCTCCCGTCCTCTCGACAA
GCGGTTACAAAAACAGGCGAGTGGGAGGAAGGGAGACGGAGAAAAGAGGT
ATCGTCCCTCATGATTACGTGTTTGTCCTCGCACATTACCGAACAACGCA
GCATCGAAAAACGACCAAAAACACGTATCGCATTTGGTATCCATATCTTG
CGCCTTGCTTCTTGCCACCGAGAGCCTTGCCGAAATACTCCGCGGTTCTT
GTAATCCACCTTCTGGCAATGAACAAACGCGTCGTTTTCATTCCGGCGAA
CACATTCATGTGTATGCACTCCCGCGATTCGACAACGCTTTCACCGAAAC
CTCCCGTCCTCTCGACAAGCGGTTACAAAAACAGGCGAGTGGGAGGAAGG
GAGACGGAGAAAAGAGGTATCGTCCCTCATGATTACGTGTTTGTCCTCGC
ACATTACCGAACAACGCAGCATCGAAAAACGACCAAAAACACGTATCGCA
TTTGGTATCCATATCTTGCGCCTTGCTTCTTGCCACCGAGAGCCTTGCCG
AAATACTCCGCGGTTCTTGTAATCCACCTTCTGGCA
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