mRNA_P-fluviatile_contig82.14817.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig82.14817.1
Unique NamemRNA_P-fluviatile_contig82.14817.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig82.14817.1 vs. uniprot
Match: D7FPC1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPC1_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 1.940e-70
Identity = 105/138 (76.09%), Postives = 124/138 (89.86%), Query Frame = 1 
Query:    1 MDTSFIAGVLAYALATFNGGYLWHIVLFNDMYVALKVYTRL-DDVAIPLGAAAVGIQALLVSYMLPVFHRATGRSGPLSGAIFGLWMAGLMFSVGVLAHSAKNRSACVEGFVVLEGIYCLLQFPLSCAVAAFSQGRAA 411
            M TSF AGVLAY LATFNGGYLWH+VLFNDMY++LKV+TR  +D+ + LGA+AV +QALLV+YMLP+F RATGRSG LSGA+FGLW+AGL+FSV VLAHSAKN++ACVEGFV +EG+YCLLQFPLSC+  AFSQGRAA
Sbjct:    1 MSTSFAAGVLAYMLATFNGGYLWHLVLFNDMYLSLKVWTRFPEDIGLQLGASAVLLQALLVAYMLPIFQRATGRSGTLSGALFGLWVAGLVFSVAVLAHSAKNQTACVEGFVAMEGLYCLLQFPLSCSFVAFSQGRAA 138
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BLAST of mRNA_P-fluviatile_contig82.14817.1 vs. uniprot
Match: A0A3A0CXL5_9BACT (DUF1761 domain-containing protein n=1 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A3A0CXL5_9BACT)

HSP 1 Score: 79.7 bits (195), Expect = 2.170e-16
Identity = 46/121 (38.02%), Postives = 70/121 (57.85%), Query Frame = 1 
Query:   13 FIAGVLAYALATFNGGYLWHIVLFNDMYVALKVYTRLDDVAIPLGAAAVGIQALLVSYMLPVFHRATGRSGPLSGAIFGLWMAGLMFSVGVLAHSAKNRSACVEGFVVLEGIYCLLQFPLS 375
            FI    AY   TF  G++WH+VLF D+Y  L +++R+D+  IPLG +A+ IQ  ++SY    F +    S  L+G  FGL     + S  V+A +AK     +  ++++E +Y LLQF LS
Sbjct:    6 FIGAWAAYVAITFCLGFVWHLVLFKDLYHELAIFSRIDNPIIPLGFSAMLIQGAVLSYAYRFFPQR--HSSVLNGIKFGLLAGVFIASSAVIAEAAKQNVTSLSIWLLVETVYYLLQFGLS 124
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig82.14817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPC1_ECTSI1.940e-7076.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A3A0CXL5_9BACT2.170e-1638.02DUF1761 domain-containing protein n=1 Tax=candidat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig82contigP-fluviatile_contig82:242276..244500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score65.5
Seed ortholog evalue2.3e-08
Seed eggNOG ortholog1038859.AXAU01000011_gene2412
EggNOG OGs1NQEC@1224,2EH8B@1,33B05@2
Best tax levelProteobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_003950.1
Exons3
Model size411
Cds size411
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig82.14817.1prot_P-fluviatile_contig82.14817.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig82 242276..244500 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817281.715511-CDS-P-fluviatile_contig82:242275..2424431622817281.715511-CDS-P-fluviatile_contig82:242275..242443Porterinema fluviatile SAG_2381CDSP-fluviatile_contig82 242276..242443 +
1693571925.0176854-CDS-P-fluviatile_contig82:242275..2424431693571925.0176854-CDS-P-fluviatile_contig82:242275..242443Porterinema fluviatile SAG_2381CDSP-fluviatile_contig82 242276..242443 +
1622817281.7260733-CDS-P-fluviatile_contig82:243151..2432381622817281.7260733-CDS-P-fluviatile_contig82:243151..243238Porterinema fluviatile SAG_2381CDSP-fluviatile_contig82 243152..243238 +
1693571925.0287566-CDS-P-fluviatile_contig82:243151..2432381693571925.0287566-CDS-P-fluviatile_contig82:243151..243238Porterinema fluviatile SAG_2381CDSP-fluviatile_contig82 243152..243238 +
1622817281.7361608-CDS-P-fluviatile_contig82:244344..2445001622817281.7361608-CDS-P-fluviatile_contig82:244344..244500Porterinema fluviatile SAG_2381CDSP-fluviatile_contig82 244345..244500 +
1693571925.038858-CDS-P-fluviatile_contig82:244344..2445001693571925.038858-CDS-P-fluviatile_contig82:244344..244500Porterinema fluviatile SAG_2381CDSP-fluviatile_contig82 244345..244500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig82.14817.1

>prot_P-fluviatile_contig82.14817.1 ID=prot_P-fluviatile_contig82.14817.1|Name=mRNA_P-fluviatile_contig82.14817.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=137bp
MDTSFIAGVLAYALATFNGGYLWHIVLFNDMYVALKVYTRLDDVAIPLGA
AAVGIQALLVSYMLPVFHRATGRSGPLSGAIFGLWMAGLMFSVGVLAHSA
KNRSACVEGFVVLEGIYCLLQFPLSCAVAAFSQGRAA
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mRNA from alignment at P-fluviatile_contig82:242276..244500+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig82.14817.1 ID=mRNA_P-fluviatile_contig82.14817.1|Name=mRNA_P-fluviatile_contig82.14817.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2225bp|location=Sequence derived from alignment at P-fluviatile_contig82:242276..244500+ (Porterinema fluviatile SAG_2381)
ATGGACACATCTTTCATTGCGGGTGTACTGGCGTACGCGTTGGCCACCTT
TAACGGGGGGTACTTGTGGCATATAGTGCTGTTCAACGACATGTACGTTG
CTCTCAAGGTATACACACGACTCGACGACGTCGCGATCCCGCTTGGTGCG
GCTGCCGTGGGCATCCAGGTGAGGAGGATGTGTGGAGGCACAACAGCCTA
CACCGGAAGCTACACACAAATATATATTGACGCAACTTGAAAGGTTTTTG
CTCAAAGTTTGCGCGTGATCAAGCGGGCCGCCTCGCACACACAACGTTGT
TGAATGAGACTGGCTCGCTTGCCCCCCCCCGCACATCACCCCCGCCATAC
CCACGCTTGTCTCGGTCCTCTCCCGTGGCTGTGTGTATCATGTCAAACAT
GTGTGCCAGTTTGCCAGTTTGCCAGTTTCAGTCATCGAGGAGCTCAGATA
TGTCCCGTTGGCAGCAAAGGTAGGTCGAACGACGAACAATGAGGGCAGCA
TCTGTCTAACGAGGAAGGTGGAGAGGGAGTGTCGACAGAGAGAGGCTGCC
GACTCGTTTGCATTTGGTTGCAGAGCAGCTTTCACTTGGTATGTAAAACA
CCAACCTACGGGCTTTGAAACGTCCACCCTGAACAATCTAGTCAATATCA
GCGCGCGCGCCCTCAACTTGCTAACGCACAGCCTTGTTTCTGTCAGCCCG
ACCGTTGTTCAGGCGGAGGTTACAAGATGGAATACGTTTCGTTGTGTTCC
TGGCCATTCTTCTCTCGTATTTTTGATATGCCGCATGCATCAAACTCCGA
TGTGTTTACTTTCGAGTCGTTGTCGTTTGTTTTTTTGTATTTTCCGGCCT
GCCCATGTCCTTTGCTGGGAGGGCAGGCCCTGCTCGTGTCGTACATGCTC
CCGGTGTTCCACCGGGCAACAGGGAGGTCTGGCCCGCTCAGCGGAGCGAT
TTTCGGCCTTTGGGTGAGAGAGCATCCGCGTCACCTTGCGACAACCATGC
CCTTGCGGCCGGCCTTATGTCGTTGTCTTCAGATTCTAATGTTTTTGGGG
GGTGGCGGGGCAGGCGCTGCTCCACGAGCGTTTAGCGGGAGGGGGCGAAC
GTCGCCCTTTGCTGGCGATAATTGTCCCTGTTATATACTTCGATATTTTA
CTAATATACTTCAAGAATTAGTGTGACTGCCAATGTCAAACATCACGAGA
AGTTGGACTGGACCATAGGCTTCTGGCCTGTGGCGATGGCGCCCAGACCT
TGCAGAGGCACAGGGGCGCAGAAGCGCAGTGAATTTCTTCCCAGAAATTC
GCTCGCTCGCTCGCTCACCGTTCGTGGATGGGGTTGTGTGCTGACTCCCA
ATTTGAAAATGCGAGCGGTTTTTGGATGGATGTTTTTGGATGGGTGTCGA
GATCCGTTTCCTTTTTTTATTGCCGAGGTCGCGGACGTCCTTGTCATCGA
CTCTGCACCCTTGGTCCCTCCGTCGTCCCTCCCTTCTTCTCGCTGCCGAT
TCTTGGTATGGCTTGCCCAAGCGCATGCCGGGGTGTGTGTACTCACTTCA
CGCATGCTATAGTCGTTAGGCCATAGAGCTCGCATCCTTAATATGCCGAG
ACGGAGCGATTTGCCGGTTTTTTACCGGCCCAGGCTCTTGCATTCACCAA
GCGCGAAGCGCCGTGATGCATTCGGCGAGTCGCATGAAGGGTGTCCTCGT
GAGGATGATTGGCCAAAGGCTTGCTGATAGTGCACATTGTTGACAGCGTC
AAAGTGAGCTGCAACTTATTTTTTGGCGTCGCCCCAGATTCAGCCATTGG
AATGTTCTATGGCAGTGCCTCACGGACGCCGGGGGGGGGGTCGAGCCCTC
GGCTCTTTGGGTGCTTCGAGCCTTGTGAATCGAAGATTGTCTCCCATCGT
CAAGTAATTGCGGCCGCTTGATGCTCGCTTTACTAACTGCAACGCTGTCA
TGCCTCTCCTCCATCAGTCTTGCCTGACTGTCTACCTACCTGCCTGCACA
TCGTGCGTCAAAACCTACCAGCCCACCTGTCCACCCAGCTCATTACTGCT
CGTCCCCCCCCCCCCCAAGATGGCCGGTTTAATGTTTTCGGTAGGTGTGC
TCGCGCACTCCGCCAAAAACCGCTCCGCCTGTGTGGAGGGCTTTGTGGTC
CTGGAGGGGATCTACTGCCTGCTGCAGTTCCCGCTGTCATGCGCGGTCGC
CGCGTTTTCGCAGGGGAGGGCCGCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig82:242276..244500+

>mRNA_P-fluviatile_contig82.14817.1 ID=mRNA_P-fluviatile_contig82.14817.1|Name=mRNA_P-fluviatile_contig82.14817.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=822bp|location=Sequence derived from alignment at P-fluviatile_contig82:242276..244500+ (Porterinema fluviatile SAG_2381)
ATGGACACATCTTTCATTGCGGGTGTACTGGCGTACGCGTTGGCCACCTT
TAACGGGGGGTACTTGTGGCATATAGTGCTGTTCAACGACATGTACGTTG
CTCTCAAGGTATACACACGACTCGACGACGTCGCGATCCCGCTTGGTGCG
GCTGCCGTGGGCATCCAGATGGACACATCTTTCATTGCGGGTGTACTGGC
GTACGCGTTGGCCACCTTTAACGGGGGGTACTTGTGGCATATAGTGCTGT
TCAACGACATGTACGTTGCTCTCAAGGTATACACACGACTCGACGACGTC
GCGATCCCGCTTGGTGCGGCTGCCGTGGGCATCCAGGCCCTGCTCGTGTC
GTACATGCTCCCGGTGTTCCACCGGGCAACAGGGAGGTCTGGCCCGCTCA
GCGGAGCGATTTTCGGCCTTTGGGCCCTGCTCGTGTCGTACATGCTCCCG
GTGTTCCACCGGGCAACAGGGAGGTCTGGCCCGCTCAGCGGAGCGATTTT
CGGCCTTTGGATGGCCGGTTTAATGTTTTCGGTAGGTGTGCTCGCGCACT
CCGCCAAAAACCGCTCCGCCTGTGTGGAGGGCTTTGTGGTCCTGGAGGGG
ATCTACTGCCTGCTGCAGTTCCCGCTGTCATGCGCGGTCGCCGCGTTTTC
GCAGGGGAGGGCCGCGATGGCCGGTTTAATGTTTTCGGTAGGTGTGCTCG
CGCACTCCGCCAAAAACCGCTCCGCCTGTGTGGAGGGCTTTGTGGTCCTG
GAGGGGATCTACTGCCTGCTGCAGTTCCCGCTGTCATGCGCGGTCGCCGC
GTTTTCGCAGGGGAGGGCCGCG
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