mRNA_P-fluviatile_contig82.14806.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig82.14806.1
Unique NamemRNA_P-fluviatile_contig82.14806.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig82.14806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig82contigP-fluviatile_contig82:107493..108036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size544
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig82.14806.1prot_P-fluviatile_contig82.14806.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig82 107639..108001 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817278.8580503-UTR-P-fluviatile_contig82:107492..1076381622817278.8580503-UTR-P-fluviatile_contig82:107492..107638Porterinema fluviatile SAG_2381UTRP-fluviatile_contig82 107493..107638 +
1693571884.5920734-UTR-P-fluviatile_contig82:107492..1076381693571884.5920734-UTR-P-fluviatile_contig82:107492..107638Porterinema fluviatile SAG_2381UTRP-fluviatile_contig82 107493..107638 +
1622817278.878979-UTR-P-fluviatile_contig82:108001..1080361622817278.878979-UTR-P-fluviatile_contig82:108001..108036Porterinema fluviatile SAG_2381UTRP-fluviatile_contig82 108002..108036 +
1693571884.610242-UTR-P-fluviatile_contig82:108001..1080361693571884.610242-UTR-P-fluviatile_contig82:108001..108036Porterinema fluviatile SAG_2381UTRP-fluviatile_contig82 108002..108036 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817278.8682761-CDS-P-fluviatile_contig82:107638..1080011622817278.8682761-CDS-P-fluviatile_contig82:107638..108001Porterinema fluviatile SAG_2381CDSP-fluviatile_contig82 107639..108001 +
1693571884.6021206-CDS-P-fluviatile_contig82:107638..1080011693571884.6021206-CDS-P-fluviatile_contig82:107638..108001Porterinema fluviatile SAG_2381CDSP-fluviatile_contig82 107639..108001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig82.14806.1

>prot_P-fluviatile_contig82.14806.1 ID=prot_P-fluviatile_contig82.14806.1|Name=mRNA_P-fluviatile_contig82.14806.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=121bp
MPAQDGDTAKTVGRTLDAPAMGFAHWEVRGAPSEAEHGWPTRLPGRSAPT
PDEKQRFVVGMETAACNPSNAAGPVPWTILFRGRTIELRKSAKAGGKRNG
RDVDHAAILLFVYRSHLLPI*
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mRNA from alignment at P-fluviatile_contig82:107493..108036+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig82.14806.1 ID=mRNA_P-fluviatile_contig82.14806.1|Name=mRNA_P-fluviatile_contig82.14806.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=544bp|location=Sequence derived from alignment at P-fluviatile_contig82:107493..108036+ (Porterinema fluviatile SAG_2381)
GTCAGAAATATACCTGCGTGACAGGGCGTAATGGGGGAAAAGCAGCAGGG
GTAGCGGGAGGGGGCATTAGTTGCTCGCTTCCGTCGCTTTGGAAACGGTC
GGGGAGCCGCGGTGCCAACCACGACACGGAGCTCCTCCCGAGATGAATGC
CAGCGCAGGACGGAGACACCGCAAAAACAGTTGGGCGTACCCTAGACGCT
CCTGCTATGGGTTTCGCACATTGGGAAGTCCGCGGTGCCCCCTCCGAGGC
GGAGCATGGGTGGCCCACCCGCCTCCCTGGCAGGAGTGCGCCGACGCCGG
ACGAAAAGCAACGTTTCGTTGTCGGAATGGAAACAGCAGCTTGCAATCCT
TCCAATGCTGCTGGTCCCGTCCCCTGGACTATACTTTTCCGTGGAAGGAC
TATCGAGCTTCGAAAGTCAGCCAAGGCGGGGGGTAAACGGAATGGGCGTG
ATGTAGACCATGCAGCTATTCTCCTATTTGTTTATCGGTCTCACCTCTTG
CCCATTTGATCTGCGGCGGCATCCAAAAGCTCGAGCGCCTCCTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig82:107493..108036+

>mRNA_P-fluviatile_contig82.14806.1 ID=mRNA_P-fluviatile_contig82.14806.1|Name=mRNA_P-fluviatile_contig82.14806.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=726bp|location=Sequence derived from alignment at P-fluviatile_contig82:107493..108036+ (Porterinema fluviatile SAG_2381)
ATGCCAGCGCAGGACGGAGACACCGCAAAAACAGTTGGGCGTACCCTAGA
CGCTCCTGCTATGGGTTTCGCACATTGGGAAGTCCGCGGTGCCCCCTCCG
AGGCGGAGCATGGGTGGCCCACCCGCCTCCCTGGCAGGAGTGCGCCGACG
CCGGACGAAAAGCAACGTTTCGTTGTCGGAATGGAAACAGCAGCTTGCAA
TCCTTCCAATGCTGCTGGTCCCGTCCCCTGGACTATACTTTTCCGTGGAA
GGACTATCGAGCTTCGAAAGTCAGCCAAGGCGGGGGGTAAACGGAATGGG
CGTGATGTAGACCATGCAGCTATTCTCCTATTTGTTTATCGGTCTCACCT
CTTGCCCATTTGAATGCCAGCGCAGGACGGAGACACCGCAAAAACAGTTG
GGCGTACCCTAGACGCTCCTGCTATGGGTTTCGCACATTGGGAAGTCCGC
GGTGCCCCCTCCGAGGCGGAGCATGGGTGGCCCACCCGCCTCCCTGGCAG
GAGTGCGCCGACGCCGGACGAAAAGCAACGTTTCGTTGTCGGAATGGAAA
CAGCAGCTTGCAATCCTTCCAATGCTGCTGGTCCCGTCCCCTGGACTATA
CTTTTCCGTGGAAGGACTATCGAGCTTCGAAAGTCAGCCAAGGCGGGGGG
TAAACGGAATGGGCGTGATGTAGACCATGCAGCTATTCTCCTATTTGTTT
ATCGGTCTCACCTCTTGCCCATTTGA
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