mRNA_P-fluviatile_contig81.14783.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig81.14783.1
Unique NamemRNA_P-fluviatile_contig81.14783.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig81.14783.1 vs. uniprot
Match: A0A6H5KEF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF2_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.450e-34
Identity = 94/138 (68.12%), Postives = 101/138 (73.19%), Query Frame = 2 
Query:    2 KGPKPTFTRVIPKFLQQYETMLTGPKPSPD-DGEEVFSGGGNYTDAGGGSAGXXXXMPGR----VGRSKSEGXXXXXXXXXXXXXXXXXXXXXGFGDYDEEEVAALEAYMKTHPSKEEDRKALRDRARELSANIGSAE 400
            KGPKP FTRVIPKFLQQYETMLTGPKP    D EE FSGGG++TD G   +     MPGR       SK        XXXXXXXXXXXXXXX  F DYDEEEVAALEAYMKTHPSKEED++ALR RARELS +IGS +
Sbjct:    9 KGPKPAFTRVIPKFLQQYETMLTGPKPQQGPDNEETFSGGGDFTDGGXXXSSGKSGMPGRGXXXXXXSKQGAAEGRGXXXXXXXXXXXXXXXGAFEDYDEEEVAALEAYMKTHPSKEEDKEALRKRARELSVSIGSGQ 146
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BLAST of mRNA_P-fluviatile_contig81.14783.1 vs. uniprot
Match: D7FMH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH3_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 9.860e-23
Identity = 98/143 (68.53%), Postives = 109/143 (76.22%), Query Frame = 2 
Query:  269 FGDYDEEEVAALEAYMKTHPSKEEDRKALRDRARELSANIGSAERKSTRGGGAXXXXXXXXXXXGGLTXXXXXXXXXXPPVEYVDASGRLKFNKRPGAGGSVAGAGAEXXXXXXXXXXXXXXXXXLKKLNNAKLLSFQDDDDG 697
            F DYDEEEVAALEAYMKTHPSKEED++ALR RARELSA+IGS +    +GG      XXXXXXX    XXXXXXXX  P +EY DASG+LKFNKRP +  + AG    XXXXXXXXXXXXXXXXX    +NAKLLSF DD+DG
Sbjct:   39 FEDYDEEEVAALEAYMKTHPSKEEDKEALRKRARELSASIGSGQGSEAKGGRTAGGNXXXXXXXXXXXXXXXXXXXEEP-IEYTDASGKLKFNKRPVS--AAAGGXXXXXXXXXXXXXXXXXXXXXXXXSNAKLLSFGDDEDG 178
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig81.14783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KEF2_9PHAE1.450e-3468.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMH3_ECTSI9.860e-2368.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig81contigP-fluviatile_contig81:327259..330648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1367
Cds size642
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig81.14783.1prot_P-fluviatile_contig81.14783.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig81 327923..330587 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817277.2794504-UTR-P-fluviatile_contig81:327258..3279221622817277.2794504-UTR-P-fluviatile_contig81:327258..327922Porterinema fluviatile SAG_2381UTRP-fluviatile_contig81 327259..327922 -
1693571882.888141-UTR-P-fluviatile_contig81:327258..3279221693571882.888141-UTR-P-fluviatile_contig81:327258..327922Porterinema fluviatile SAG_2381UTRP-fluviatile_contig81 327259..327922 -
1622817277.3287604-UTR-P-fluviatile_contig81:330587..3306481622817277.3287604-UTR-P-fluviatile_contig81:330587..330648Porterinema fluviatile SAG_2381UTRP-fluviatile_contig81 330588..330648 -
1693571882.9320793-UTR-P-fluviatile_contig81:330587..3306481693571882.9320793-UTR-P-fluviatile_contig81:330587..330648Porterinema fluviatile SAG_2381UTRP-fluviatile_contig81 330588..330648 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817277.2906003-CDS-P-fluviatile_contig81:327922..3282251622817277.2906003-CDS-P-fluviatile_contig81:327922..328225Porterinema fluviatile SAG_2381CDSP-fluviatile_contig81 327923..328225 -
1693571882.8958328-CDS-P-fluviatile_contig81:327922..3282251693571882.8958328-CDS-P-fluviatile_contig81:327922..328225Porterinema fluviatile SAG_2381CDSP-fluviatile_contig81 327923..328225 -
1622817277.3031714-CDS-P-fluviatile_contig81:329215..3295311622817277.3031714-CDS-P-fluviatile_contig81:329215..329531Porterinema fluviatile SAG_2381CDSP-fluviatile_contig81 329216..329531 -
1693571882.903346-CDS-P-fluviatile_contig81:329215..3295311693571882.903346-CDS-P-fluviatile_contig81:329215..329531Porterinema fluviatile SAG_2381CDSP-fluviatile_contig81 329216..329531 -
1622817277.3184905-CDS-P-fluviatile_contig81:330564..3305871622817277.3184905-CDS-P-fluviatile_contig81:330564..330587Porterinema fluviatile SAG_2381CDSP-fluviatile_contig81 330565..330587 -
1693571882.914109-CDS-P-fluviatile_contig81:330564..3305871693571882.914109-CDS-P-fluviatile_contig81:330564..330587Porterinema fluviatile SAG_2381CDSP-fluviatile_contig81 330565..330587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig81.14783.1

>prot_P-fluviatile_contig81.14783.1 ID=prot_P-fluviatile_contig81.14783.1|Name=mRNA_P-fluviatile_contig81.14783.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=214bp
MLTGPKPSPDDGEEVFSGGGNYTDAGGGSAGGSGGMPGRVGRSKSEGAGA
GEAAGGGGASGGGASGGNGFGDYDEEEVAALEAYMKTHPSKEEDRKALRD
RARELSANIGSAERKSTRGGGAQAGGSQASGPQGGLTTKKSPPPPEEPPV
EYVDASGRLKFNKRPGAGGSVAGAGAEGGDGGDMGGKQKRKRAKLKKLNN
AKLLSFQDDDDGG*
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mRNA from alignment at P-fluviatile_contig81:327259..330648-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig81.14783.1 ID=mRNA_P-fluviatile_contig81.14783.1|Name=mRNA_P-fluviatile_contig81.14783.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3390bp|location=Sequence derived from alignment at P-fluviatile_contig81:327259..330648- (Porterinema fluviatile SAG_2381)
GAAAGGGCCAAAACCTACCTTCACAAGAGTAATACCAAAGTTTCTGCAGC
AGTATGAGACGATGCTGACTGGCCCGAAGCCCAGGTAGGCGGAGCAATCG
CTACTGTTCATCTCCCTTCCACACTCCTATTTGTTGCGTTTTTGGGGTCA
GTGGACTTTACATGTCACCTGAGTAGCAAGCAATCTTGGACGTTACGATG
AATGAACAAACCCCAAATATTTTACTTCTCTAGTAAGCGTTGCATTTCAA
ACGCGACACACTGCGATAAGTCGAAGCACACGCAGTTCTCGATGGCGTCT
TTTCACCACGTTGATCTGACAGCCGCAGCATGGATTGGAAAAAGAGTGGA
GAATATGGTCAGGTTATGGTCGTATCTTATTACCGTTCCGCGTGTCGCCA
TCGCCGTTGAACCCAAAATAGTGTAGTCGTGACAGGGGTGCAGCGGTGTC
ACGGGATCTACGGAAAAACTCATCCACCATGTTTGATCCGCTCGGTCTTC
GTGATGCTCACCATCTTGTCTCCTCGGCTTCAGCCGCTGCAGCTCGCCGG
CAGTTCTTCCCAAAACATAGGTTGCTGCACTTATTTTTTCTCTCGTTCGC
CGGCCTTCGAGCTTGCCGTTTACTTTGCACAGCAGACAAATCCATTGCAC
CTATAGCGGTCCGTTGATCACTATTTGTCTGCCTGACCAACGACGCGGCA
AGCTGTTCGGTGCGGTTTGATATCAGGATGTTGGTGCGTGTCCTCTCTAG
ATACTGTGAATTTTAGCCTGAGAAACTGGTATGTGAGATTAGTCCTTGTT
GTACACATGTTGATATAAGTATATGAACAACTGTCCAGTTTGCTCTGTTT
TCGAAATCCCGATCCCCTGCGACTTGGCGGTTGTGGCAGTCGGCCTGTGT
GCCGTGCGATGTCTCGCTTGCCCTTGTTCGTTGAGCCCTCCATTTTCCGC
GTATCTTGTACGGGATATGAGGGGTAGTACTTTGTTCCCGTTGGAATTGC
TCCAAGCGACTTACCGTTACCCCTTGCCAATAACCCTATCCTTGCAACGA
CGTGCCTCGCAAAAATCGGAACGCTTCCGCTTTTCCCTCCCCCCGTTGGT
GCCTTTGCCGGCAAAAGCCCAGATGACGGCGAGGAAGTTTTCAGCGGGGG
AGGAAACTACACAGACGCAGGCGGCGGTAGCGCTGGCGGAAGTGGCGGCA
TGCCGGGCCGAGTGGGTCGCAGCAAAAGCGAGGGCGCGGGAGCAGGGGAA
GCAGCAGGCGGCGGTGGAGCCAGCGGCGGCGGCGCTAGCGGTGGAAACGG
ATTTGGAGATTACGACGAGGAAGAGGTGGCCGCTTTAGAAGCGTACATGA
AGACGCATCCCAGTAAAGAGGAGGATCGCAAGGCGTTACGGGATCGCGCC
AGAGAGCTGTCCGCTAACATCGGCTCCGCCGAGGTGAGAGAGATTCCTCG
TGGTTTGGTCGACGGCGCTATTGCCTTCTAAGCAACGTTGTCGGCTGTCG
CACAATAGGCTTCTGAGCAGCAGGCTCCGACCGTCGGCTCACTCGCAAGA
TTGGAAGATAGGCACCGCTTGTAATTAATCGCAGCTTTTTCTGTATCAGA
CGTCACCCGATAGTGTCGCGGCAGTTCATCGTGCATTCCGAGGCTGTGGT
GATTTGGTCGGCCACTTCATCGCGAGCGTTAACACCCCTACCTCTCCCTC
TTTCGGAGCCGGAGCCGTACACTTAAGCTCGGTCTTCTCGCCCAGCTCAA
GGCCGCTGCTTGACAATGAGCAACCGAGGGGAGGCTAGTAAGGGGCACGT
CGAACTGCGCGATATGATGAGCGCTTCGTCAAATTGGGCTATGCCGGCGG
CCCCTTCCTTGCGTGCAGTAGGGCCGGGACAAGGCCATTTTGCTCCTCCT
CAGCTCACCGGGTCTACCAAGTCACTCTTGTGTTGAACTTCACTTTAGCT
GATTATTCTAATATCAACCACCAAATCACTGCCAAAGTTGATCTTCCCTA
TCCTTGTTTTAGTCGCCTTCAGGTCAAAGGGTCATTTGGCATAAGAAAGC
GTTTGTTCGATTTGAAGCCCTCGCTTGCGCTCCAGGAGGTTTTGAACTCA
CGAACAACCGACAGGTCGATTACCTTTAATCTTCGCTTCTCTTGCAATCT
GCTCGAAAGCCCCCTCTCCTTTTTGTTCGATAGTTCATCACGGACTTGTT
TTTCCCACCTGAACGCTAGCAGCCCGGCTGGCACACTCCCACATATTGTA
CGGGAAGGTCTATGCTGGCGGCAGCAGACATGGACGAAAACAGCAGCAGC
AGCAGCAGCAGCAACAACAACAACAACAACAACAACAACAATAGCAACAA
CAAGAGCAACAACAATAACTATAACAACAACAACCACAACCTCACACGCC
TTTCTGCTGGTGCCGAAATTCAGAGGAAGAGCACAAGAGGCGGCGGAGCA
CAAGCCGGTGGGTCACAAGCTTCCGGACCGCAAGGGGGTTTGACCACGAA
GAAGAGTCCTCCGCCACCAGAAGAACCCCCCGTCGAGTACGTGGATGCTT
CTGGAAGATTGAAATTCAACAAGCGGCCGGGTGCGGGAGGGTCAGTTGCT
GGGGCAGGGGCCGAAGGAGGAGATGGGGGCGACATGGGCGGTAAACAGAA
AAGAAAGCGGGCAAAGCTGAAGAAGCTTAACAACGCAAAGCTGCTGTCTT
TTCAAGACGACGACGACGGAGGATGAGAGAAGGACACACTCCCGAGATGC
GCGCATTTGTATTGGCAGTGCGTTCTTGTAGCCTGTACATTTCGCTGCCG
GGGAAACACTGAAGGGACGGAGGATTGCGTGGTTGTAATCACGCGCGCGC
CAACCATTGTCTCTCGGCTCCAGGTGTACATGAAGGAAGCGCGGGGATGG
GTTTCCGCGTTCGGGGCCGTCGCCAAGCCTTTTAGCAGTTCAGCACCATC
CATTTGTCGGCATTTAGCTAGCTAGCGTGAAGGTAGCCCCGGTGGTTGAG
TTGCCAAGCTGGTAAATCTTCGCACGGCTACAGGCATCGAAATAAGCCCC
GTGGCATCAAAATAAGCCCCGTGGTATAGCCTGCCCCGGCATTTCGGCGG
TGATGCAGCAGCAATAAAAGCAGCACGAGGCTGAGCAGGGGAGGAGAAGG
CCCATCTTTTGGCACCTTCTTGCGCTGCGAAAATTACCCTTAGGCCTTGC
GGTACGTAAGTGCCGCCGGAGGGACTCATGAACTGGAGAGTACGTACTTT
ATCACGCCCTTGCCACGCTCAGTAGACTGCCCGAATATGGATTTTGTCTT
TCATCCACCGTAAACTGTCAGGACCTTCACCGACAGATCTATCTCTTCGA
TCGACTTATGGACAAGACAATGTCAAGGTTCCTACCCCGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig81:327259..330648-

>mRNA_P-fluviatile_contig81.14783.1 ID=mRNA_P-fluviatile_contig81.14783.1|Name=mRNA_P-fluviatile_contig81.14783.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1284bp|location=Sequence derived from alignment at P-fluviatile_contig81:327259..330648- (Porterinema fluviatile SAG_2381)
ATGCTGACTGGCCCGAAGCCCAGATGCTGACTGGCCCGAAGCCCAGCCCA
GATGACGGCGAGGAAGTTTTCAGCGGGGGAGGAAACTACACAGACGCAGG
CGGCGGTAGCGCTGGCGGAAGTGGCGGCATGCCGGGCCGAGTGGGTCGCA
GCAAAAGCGAGGGCGCGGGAGCAGGGGAAGCAGCAGGCGGCGGTGGAGCC
AGCGGCGGCGGCGCTAGCGGTGGAAACGGATTTGGAGATTACGACGAGGA
AGAGGTGGCCGCTTTAGAAGCGTACATGAAGACGCATCCCAGTAAAGAGG
AGGATCGCAAGGCGTTACGGGATCGCGCCAGAGAGCTGTCCGCTAACATC
GGCTCCGCCGAGCCCAGATGACGGCGAGGAAGTTTTCAGCGGGGGAGGAA
ACTACACAGACGCAGGCGGCGGTAGCGCTGGCGGAAGTGGCGGCATGCCG
GGCCGAGTGGGTCGCAGCAAAAGCGAGGGCGCGGGAGCAGGGGAAGCAGC
AGGCGGCGGTGGAGCCAGCGGCGGCGGCGCTAGCGGTGGAAACGGATTTG
GAGATTACGACGAGGAAGAGGTGGCCGCTTTAGAAGCGTACATGAAGACG
CATCCCAGTAAAGAGGAGGATCGCAAGGCGTTACGGGATCGCGCCAGAGA
GCTGTCCGCTAACATCGGCTCCGCCGAGAGGAAGAGCACAAGAGGCGGCG
GAGCACAAGCCGGTGGGTCACAAGCTTCCGGACCGCAAGGGGGTTTGACC
ACGAAGAAGAGTCCTCCGCCACCAGAAGAACCCCCCGTCGAGTACGTGGA
TGCTTCTGGAAGATTGAAATTCAACAAGCGGCCGGGTGCGGGAGGGTCAG
TTGCTGGGGCAGGGGCCGAAGGAGGAGATGGGGGCGACATGGGCGGTAAA
CAGAAAAGAAAGCGGGCAAAGCTGAAGAAGCTTAACAACGCAAAGCTGCT
GTCTTTTCAAGACGACGACGACGGAGGATGAAGGAAGAGCACAAGAGGCG
GCGGAGCACAAGCCGGTGGGTCACAAGCTTCCGGACCGCAAGGGGGTTTG
ACCACGAAGAAGAGTCCTCCGCCACCAGAAGAACCCCCCGTCGAGTACGT
GGATGCTTCTGGAAGATTGAAATTCAACAAGCGGCCGGGTGCGGGAGGGT
CAGTTGCTGGGGCAGGGGCCGAAGGAGGAGATGGGGGCGACATGGGCGGT
AAACAGAAAAGAAAGCGGGCAAAGCTGAAGAAGCTTAACAACGCAAAGCT
GCTGTCTTTTCAAGACGACGACGACGGAGGATGA
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