mRNA_P-fluviatile_contig81.14767.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-fluviatile_contig81.14767.1
Unique Name	mRNA_P-fluviatile_contig81.14767.1
Type	mRNA
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)

Homology

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BLAST of mRNA_P-fluviatile_contig81.14767.1 vs. uniprot
Match: A0A6H5KWS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS8_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 7.710e-37
Identity = 167/454 (36.78%), Postives = 223/454 (49.12%), Query Frame = 1

Query:  826 MDDFCILRRDWGPIWDKIVANQPDGTLPSGEQYHDRLQQLLDAVWESERLKTAGRKKARTKSNVAVDVDVGAAKNGGAGP-TAKRDDGV------------GSDSGDSG------------------EDGGEPAQGGTGVAIRGAGGSAAXXXXXXXXXGLGVNTGGGECEGEPAEPAAGTPAYVKWLAQQAA---KQALPP-VQGGDGAGSSNLRTRPKLWMHHLTLAFCFFGRPAGDNEDVDLRGCKEVSGPPGRKXXXXXXXXXXXXXXXXXXTSSPV---------NKLGPQALHHLVGAGEAQSRAKVKKEKARMAAEQSNQGRHEAVLKLMQEQAKVSGNVAGAVMQVAADTHAKLALDEEDARRKRKKETIDNLKGELEFASPVEKQHITTKLRSIFRLSPDLFTAGFDVEAHLNGPPLTVTPATSAATPTQPGMNGGSAGVLP*GG 2055
            M+D+ ++RRD  P +D +   QP G L SG+QY+D+L  LLD +W   R K  G  K +   ++  + D   A++  + P T K +DG             G+D    G                  +DG   A GG  V      GS A XXXXX   G G +   G       EP  G+P Y +WLA+Q A   KQA         G G+     RP  W H LTL FCFFGRPAG++ED +L  C   SGPP R    XXXXXXXXXXXXXXX              N L   A+   VGAGEAQSRAKVKK    +   QS        L+   EQ +V+  +  AV +VA +T A+ AL EE+A RKRKK+ I++L+G+L++    E + I  K+R++ ++    FTA F V   ++       P  ++  P  PG +  S    P GG
Sbjct:    1 MEDYLLIRRDVNPAFDGLEPGQPAGQLKSGQQYNDQLSALLDELWIV-RCKNLG--KPKDVVDLDEERDYLPARSSQSSPATVKEEDGEPELPCGGGLEGEGADGTQEGAAXXXXXXXXXXXXVEDTKDGSSEAGGGGAVGA----GSGAVXXXXXGEAGTGSDDSLGP------EPEEGSPDYPRWLARQGAINAKQAASDDAVSSSGDGNLGYGPRPANWTHPLTLTFCFFGRPAGEHEDTELNTCAASSGPPSRGKKRXXXXXXXXXXXXXXXXXXXXXXXXXXLTENPLHAGAVRQFVGAGEAQSRAKVKKATQEVELRQSRDAARAQFLRQNTEQLEVAKEMRDAVKRVADNTTAQRALQEEEACRKRKKQAIEDLEGDLQYCESHEAKAIKLKIRAMRKMPVGQFTADF-VSGGIDDLAGPSAPEVTSDVPALPGFSLNSETPGPEGG 440

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BLAST of mRNA_P-fluviatile_contig81.14767.1 vs. uniprot
Match: A0A6H5JM89_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM89_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 1.250e-36
Identity = 138/450 (30.67%), Postives = 198/450 (44.00%), Query Frame = 1

Query:  460 MPPVTSLLLDHNEMVQAALDHLGEILKDNQISVKDTLRIIQAVAVTYACLGVKKNGGDTSKKIKEEAVAAGYKNVAAPGFLKWL-EEKEFATPTWVAAKM----------------------GQSTMTDTDEKY-----YKDGSRLYKKHMDDFCILRRDWGPIWDKIVANQPDGTLPSGEQYHDRLQQLLDAVWESERLKTAGRKKARTKSNVAVDVDVGAAKNGGAGPTAKRD-----------------DGV---GSDSGDSGEDGGEPAQGGTGVAIRGAGGSAAXXXXXXXXXGLGVNTGGGECEGEPAEPAAGTPAYVKWLAQQAAKQALPPVQGGDGAGSSNLRT------RPKLWMHHLTLAFCFFGRPAGDNEDVDLRGCKEVSGPPG-----RKXXXXXXXXXXXXXXXXXXTSSPVNKLGPQALHHLVGAGEAQSRAKV 1632
            MP   SLLLD N ++ AAL+     + D  +++K+ +R +Q VA+ Y  +GVK+N G+   K +E  +   YK+   PGFLKWL EE +  TP W+  +M                      G+     T+  Y     YKDG +++ +++D F  +R+D  P++DK + +QP GT PSGEQY D+L +LL A+WE +      R+K +T    A + +   A+    GP+A +                  DG    G++    G D G+  +        GAG +A            G   GG   EG+P E                  Q  P   G +  G S   +      RP  WM +  L FCFFGRP+ ++ED DL   K  SGP G     +K                   S P   LG   +   VGAGEAQSRA+V
Sbjct:    1 MPATESLLLDKNPLLTAALELFSSGIGDG-LTMKEVVRQLQTVALCYTAMGVKRNAGEIDSKKREALLLKAYKDDVVPGFLKWLSEEGDCTTPPWLTMEMMGRVAVHTCRHQWHRNAGAEEQGERETAATESLYEEPKLYKDGKKIWARYLDAFRDIRKDANPVYDKTIGDQPGGTPPSGEQYADQLDELLQALWEYQ-----CREKNKTVEVTAEEKEFLRAR----GPSAAKGXXXXXXXXXXXXXLSSTDGEVVQGTEKEGGGADAGKDEE-----VAAGAGRAAGSEGID------GSGDGGAGREGQPME------------------QEQPKTPGEEDDGGSEPESVVQYPERPPNWMPYYFLTFCFFGRPS-NSEDTDLA-MKAGSGPSGDSRPRKKKKASLGSSSDGGSGSEGGASDPAANLGRAGVKQFVGAGEAQSRAQV 409

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BLAST of mRNA_P-fluviatile_contig81.14767.1 vs. uniprot
Match: A0A6H5JUY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY9_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 5.140e-12
Identity = 44/139 (31.65%), Postives = 71/139 (51.08%), Query Frame = 1

Query:  469 VTSLLLDHNEMVQAALDHLGEILKDNQISVKDTLRIIQAVAVTYACLGVKKNGGDTSKKIKEEAVAAGYKNVAAPGFLKWLEEKEFATP-TWVAAKMGQSTMTDTDEKYYKDGSRLYKKHMDDFCILRRDWGPIWDKIV 882
            V  L L+ N  V+  L+ L   L    +S    L+ +Q V + YACL VK+N G  S + K +A A GYK++A PGF KWL+E        W+  ++   T  +     + DG +L+K+       +++ +  +WD+ V
Sbjct:    9 VQPLPLEFNGYVEGTLELL---LGGKGLSQIKLLKHLQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFEVMGRTSLNGAPVLFTDGKKLWKRFDKVMREMKKTYNKVWDRCV 144

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BLAST of mRNA_P-fluviatile_contig81.14767.1 vs. uniprot
Match: A0A6H5J557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J557_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 2.360e-11
Identity = 99/352 (28.12%), Postives = 139/352 (39.49%), Query Frame = 1

Query:  469 VTSLLLDHNEMVQAALDHLGEILKDNQISVKDTLRIIQAVAVTYACLGVKKNGGDTSKKIKEEAVAAGYKNVAAPGFLKWLEEKEFATP-TWVAAK-MGQSTMTD----TDEKYYKDGSRLYKKHMDDFCILRRDWGPIWDKIVAN-QPDGTLPSGEQYHDRLQQLLDAVWESERLKTAGRKKARTKSNVAVDVDVGAAKNGGAGPTAKRDDGVGSDSGDSGEDGGEPAQ--GGTGVAIRGAGGSAAXXXXXXXXXGLGVNTGGGECEGEPAEPAAGTPAYVKWLAQQAAKQALPPVQGGDGAGSSNLRT----RPKLWMHHLTLAFCFFGRPAGDNEDVDLRGCKEVSGPP 1485
            V +LLL  NE     L++L    +  +      L +IQ  A  Y CL  K+  G  S + ++      YKN   P FL W +     TP +W+    MG +T  D    T   ++  G   Y+       +  R  G   +    +   DG LPSG Q  D  + L   +W  +R +TAGRKK    +N               G T    +G G+     GE GG+ A   G +  A+R A   A                     +GE A+      A +K       +   P    GD     +L      +P+ W+H  +L F  FGRPAG NEDVDL+  K  SG P
Sbjct:    3 VEALLLPRNEHSDDLLEYLSHTKQTPK-----HLSLIQNAAAYYQCLVTKREAGTMSTQQRDAHARTNYKNFTVPSFLCWWKTVVIQTPPSWLTQDLMGMTTGNDSGSTTPTVWF--GPSTYR-------VAVRSGGTSTESGTGDFLVDGDLPSGMQAEDIWENLQLYLWFEDR-RTAGRKKEVAAANARAKSQPIVLTGDDDGETEAGVEGAGA-----GEGGGKEAGPLGHSEAALRYATAKALARVEAARNN-----------KGEDADVVEEIAAGIKPETADEEEGKEPEETAGDAETEDDLTRLYGPKPEHWLHPASLVFAIFGRPAGTNEDVDLK-LKMTSGRP 322

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BLAST of mRNA_P-fluviatile_contig81.14767.1 vs. uniprot
Match: A0A6H5JJR6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR6_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 6.220e-11
Identity = 54/175 (30.86%), Postives = 78/175 (44.57%), Query Frame = 1

Query:  469 VTSLLLDHNEMVQAALDHLGEILKDNQIS-VKDT--LRIIQAVAVTYACLGVKKNGGDTSKKIKEEAVAAGYKNVAAPGFLKWLEE-----KEFATPTWVAAKMGQSTMTDTDEKYYKDGSRLYKKHMDDFCILRRDWGPIWDKIVANQPDGTLPSGEQYHDRLQQLLDAVWESE 969
            V SL L+ N   +  +     +L+D + S + DT  L+ +Q V + YACL VK+N G  S + K  AVA GYK++A PGF KWL+E     + F+ P      MG+++M+                                      QP   LPSG Q  D ++ LL  V+  E
Sbjct:    9 VQSLPLEFNSYAETVIS----MLRDKRSSGLTDTKLLKHLQNVCIVYACLAVKRNAGIVSTQAKHAAVAKGYKDIAVPGFFKWLKENLEADQYFSQPWLTFEVMGRTSMS------------------------------------GGQPGDQLPSGSQDEDAIEYLLHGVYHME 143

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BLAST of mRNA_P-fluviatile_contig81.14767.1 vs. uniprot
Match: A0A6H5JXZ8_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ8_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.490e-8
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 1

Query:  469 VTSLLLDHNEMVQAALDHLGEILKDNQISVKDT--LRIIQAVAVTYACLGVKKNGGDTSKKIKEEAVAAGYKNVAAPGFLKWLEE----KEFATPTWVAAK-MGQSTM 771
            V SL L+ N   +  +     +L+D    + D   L+ +Q V + YACL VK+N G  S + K  A   GYK++A PGF KWL+E    ++F    W+  + MG+++M
Sbjct:    9 VQSLPLEFNSYAETVIS----MLRDRSSGLTDAKLLKHLQNVCIVYACLAVKRNAGIVSTQAKHAAAPQGYKDIAVPGFFKWLQENLDKEDFFLQLWLTFEVMGKTSM 112

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BLAST of mRNA_P-fluviatile_contig81.14767.1 vs. uniprot
Match: A0A6H5K889_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K889_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 5.490e-8
Identity = 33/85 (38.82%), Postives = 47/85 (55.29%), Query Frame = 1

Query:  469 VTSLLLDHNEMVQAALDHLGEILKDNQISVKDT--LRIIQAVAVTYACLGVKKNGGDTSKKIKEEAVAAGYKNVAAPGFLKWLEE 717
            V SL L+ N   +  +     +L+D    + D   L+ +Q V + YACL VK+N G  S + K  A   GYK++A PGF KWL+E
Sbjct:    9 VQSLSLEFNSYAETVIS----MLRDRSSGLTDAKLLKHLQNVCIVYACLAVKRNAGIVSTQAKHAAAVQGYKDIAVPGFFKWLQE 89

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BLAST of mRNA_P-fluviatile_contig81.14767.1 vs. uniprot
Match: A0A6H5KDP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP2_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 6.940e-8
Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = 1

Query:  469 VTSLLLDHNEMVQAALDHLGEILKDNQISVKDTLRIIQAVAVTYACLGVKKNGGDTSKKIKEEAVAAGYKNVAAPGFLKWLEE 717
            V  L L+ N  V+  L+ L   L    +S    L+ +Q V + YACL VK+N G  S + K +A A GYK++A PGF KWL+E
Sbjct:    9 VQPLPLEFNGYVEGTLELL---LGGKGLSQIKLLKHLQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKE 88

[Close]

BLAST of mRNA_P-fluviatile_contig81.14767.1 vs. uniprot
Match: A0A6H5JF32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF32_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.690e-7
Identity = 37/108 (34.26%), Postives = 57/108 (52.78%), Query Frame = 1

Query:  469 VTSLLLDHNEMVQAALDHLGEILKDNQISVKDT--LRIIQAVAVTYACLGVKKNGGDTSKKIKEEAVAAGYKNVAAPGFLKWLEE----KEFATPTWVAAK-MGQSTM 771
            V SL L  N   +  +     +L+D    + D   L+ +Q V + YACL VK+N G    + K    A GYK++A PGF KWL+E    ++F    W+  + MG+++M
Sbjct:    9 VQSLPLKFNSYAETVIS----MLRDRSSGLTDAKLLKPLQNVCIVYACLAVKRNAGMVFTQAKHATAAQGYKDIAVPGFFKWLQENLDKEDFFLQPWLTFEVMGKTSM 112

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BLAST of mRNA_P-fluviatile_contig81.14767.1 vs. uniprot
Match: A0A6H5JZP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZP4_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.380e-7
Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = 1

Query:  469 VTSLLLDHNEMVQAALDHLGEILKDNQISVKDTLRIIQAVAVTYACLGVKKNGGDTSKKIKEEAVAAGYKNVAAPGFLKWLEE 717
            V  L L+ N  V+  L+ L   L    +S    L+ +Q V + YACL VK+N G  S + K +A A GYK++A PGF KWL+E
Sbjct:    9 VQPLPLEFNGYVEGTLELL---LGGKGLSQIKLLKHLQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKE 88

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig81.14767.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig81.14767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13


Match Name	E-value	Identity	Description
A0A6H5KWS8_9PHAE	7.710e-37	36.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JM89_9PHAE	1.250e-36	30.67	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JUY9_9PHAE	5.140e-12	31.65	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J557_9PHAE	2.360e-11	28.13	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JJR6_9PHAE	6.220e-11	30.86	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JXZ8_9PHAE	1.490e-8	35.19	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K889_9PHAE	5.490e-8	38.82	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KDP2_9PHAE	6.940e-8	42.17	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JF32_9PHAE	1.690e-7	34.26	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JZP4_9PHAE	3.380e-7	42.17	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-fluviatile_contig81	contig	P-fluviatile_contig81:116329..119993 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Porterinema fluviatile SAG_2381	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	3
Model size	2615
Cds size	1590
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-fluviatile_contig81.14767.1	prot_P-fluviatile_contig81.14767.1	Porterinema fluviatile SAG_2381	polypeptide	P-fluviatile_contig81 116788..119427 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622817274.9617224-UTR-P-fluviatile_contig81:116328..116787	1622817274.9617224-UTR-P-fluviatile_contig81:116328..116787	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig81 116329..116787 +
1693571877.225815-UTR-P-fluviatile_contig81:116328..116787	1693571877.225815-UTR-P-fluviatile_contig81:116328..116787	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig81 116329..116787 +
1622817275.0066004-UTR-P-fluviatile_contig81:119427..119993	1622817275.0066004-UTR-P-fluviatile_contig81:119427..119993	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig81 119428..119993 +
1693571877.2718892-UTR-P-fluviatile_contig81:119427..119993	1693571877.2718892-UTR-P-fluviatile_contig81:119427..119993	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig81 119428..119993 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622817274.9737651-CDS-P-fluviatile_contig81:116787..117109	1622817274.9737651-CDS-P-fluviatile_contig81:116787..117109	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig81 116788..117109 +
1693571877.2360659-CDS-P-fluviatile_contig81:116787..117109	1693571877.2360659-CDS-P-fluviatile_contig81:116787..117109	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig81 116788..117109 +
1622817274.986174-CDS-P-fluviatile_contig81:117583..117677	1622817274.986174-CDS-P-fluviatile_contig81:117583..117677	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig81 117584..117677 +
1693571877.2462225-CDS-P-fluviatile_contig81:117583..117677	1693571877.2462225-CDS-P-fluviatile_contig81:117583..117677	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig81 117584..117677 +
1622817274.9965775-CDS-P-fluviatile_contig81:118253..119427	1622817274.9965775-CDS-P-fluviatile_contig81:118253..119427	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig81 118254..119427 +
1693571877.2596004-CDS-P-fluviatile_contig81:118253..119427	1693571877.2596004-CDS-P-fluviatile_contig81:118253..119427	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig81 118254..119427 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-fluviatile_contig81:116329..119993+
coding sequence from alignment at P-fluviatile_contig81:116329..119993+

protein sequence of mRNA_P-fluviatile_contig81.14767.1

>prot_P-fluviatile_contig81.14767.1 ID=prot_P-fluviatile_contig81.14767.1|Name=mRNA_P-fluviatile_contig81.14767.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=530bp
MPPVTSLLLDHNEMVQAALDHLGEILKDNQISVKDTLRIIQAVAVTYACL
GVKKNGGDTSKKIKEEAVAAGYKNVAAPGFLKWLEEKEFATPTWVAAKMG
QSTMTDTDEKYYKDGSRLYKKHMDDFCILRRDWGPIWDKIVANQPDGTLP
SGEQYHDRLQQLLDAVWESERLKTAGRKKARTKSNVAVDVDVGAAKNGGA
GPTAKRDDGVGSDSGDSGEDGGEPAQGGTGVAIRGAGGSAAGEAAGGVGE
GLGVNTGGGECEGEPAEPAAGTPAYVKWLAQQAAKQALPPVQGGDGAGSS
NLRTRPKLWMHHLTLAFCFFGRPAGDNEDVDLRGCKEVSGPPGRKGRKSR
EWSSVSSSSSGNSTSSPVNKLGPQALHHLVGAGEAQSRAKVKKEKARMAA
EQSNQGRHEAVLKLMQEQAKVSGNVAGAVMQVAADTHAKLALDEEDARRK
RKKETIDNLKGELEFASPVEKQHITTKLRSIFRLSPDLFTAGFDVEAHLN
GPPLTVTPATSAATPTQPGMNGGSAGVLP*

mRNA from alignment at P-fluviatile_contig81:116329..119993+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-fluviatile_contig81.14767.1 ID=mRNA_P-fluviatile_contig81.14767.1|Name=mRNA_P-fluviatile_contig81.14767.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3665bp|location=Sequence derived from alignment at P-fluviatile_contig81:116329..119993+ (Porterinema fluviatile SAG_2381)
ACTGGCTACTGCAGAACGAGACATTGCGACTATCTGGACAACGAGGAAGG
AGTGGAGCAGCAGCAGCTTTGATCGTGCTCTCCGGTGAGTCAGCAGGAAC
CCGAGATAAAAAGAGCTGTTGGTGTAGTAGTCTTTGTGTTTGCAGAGAGA
GAGAATGCCCGCGTACTTCGGGTGGTCGGAGCAACCGAGTAAGGCTGTTT
CTTATGCCACCAGAAATCACGGCCGAAAATCGGATAATTTTCGGATTTCG
GGCCCGCCCGGAAAGACGTGTTAGTCAACCTTCTTATCCTGTTCTTTTGT
TTTTCGGGAATCTTGGGGTTTCGAGGTCACTTGATGGAGGTATGCACGTG
CCTGTGGCGGCACCGTGGCACAAGTCTGAATTTTGAATCGGCGCCGCCGC
CTCGCTGTGCGAACGCGAGGCACAACACACAGTAAAGCACAAGCATATCG
GAAACCAACATGCCACCAGTCACCTCTCTTCTCTTGGACCATAACGAGAT
GGTCCAAGCCGCACTCGACCACTTAGGGGAGATCCTCAAGGACAACCAGA
TTTCGGTGAAGGACACGCTTCGTATCATCCAGGCGGTCGCAGTGACCTAT
GCTTGCCTTGGGGTGAAGAAGAATGGCGGAGATACAAGCAAGAAGATAAA
GGAGGAGGCTGTAGCTGCCGGGTACAAGAATGTAGCCGCTCCAGGATTCT
TGAAGTGGCTGGAGGAGAAGGAGTTCGCCACGCCTACCTGGGTGGCAGCC
AAAATGGGCCAGAGCACCATGACCGATACCGGTGAGCCAGCAGTATAACT
AGTTTGAAGTCGGGCAACTCTGCGTAGACGAAATGCATTGGGTACATCGC
GTGTGTTCACCAGCAGTAGCTTTAGGGTGGCGTTGGGGTTGGCGCAGAAG
TAGGTGTGCTGGACGCGGCCCAATTCCCCTCCCTCTCTCCCTCTCTCTCT
CTCTCTGAGTTGCTGTACATGTAAAGGAGACGTGCGGTACGTTGAGTAAA
ATGCAGGCGTTGGCAGGTGCCATTTCCATGCAGGTATTGCTATCCGCTGG
AGGTTGGGTGCCAGCTGACGGGATTTCTCACAGGCTGATGAGGCAATCAG
TAATAATAGTTCATGGGCAGAACGCGAAGTTCCACGTTCAAAAATTAAGT
TTTAGAATTGACGCTACACTTGAGTACCCGTAGGTGTCTTCACGGAAAAC
ACGAAGAGTGGGGCAACAAGCGCCGGCGCTCTCTGTTTCTAACGTTTTGG
CGCAGATGAGAAATACTACAAAGACGGGTCGAGGCTGTACAAGAAGCACA
TGGATGACTTCTGTATCCTGCGGCGGGACTGGGGCCCCATCTGGGACAAG
TGAGTCGATTCGCTGGAGAAACTTCGACGATGCCTTGCGCCGCCCAGCCC
CTCAGCGGCTTAGATTTGCAGATTTGCGACTGCATCCGTTCTTGAGCATG
TAAGAGGACGCTTGCCAAATTGAATTGCGCGAGTCTGGCCACTCATTCCT
TCATTAAGTTTCTGCGCAACATCTTCAACCAAGATAACTTGTGATGAGGG
AATCTATTCTAACCGCGCAGTGAACCATTGAAAGCGCACATTATTTCCAG
GAGTAGGGGGGCGGCATACCCTATGTCAAAGGCAAGGAAGCATTATACAT
TTTCGGTGGAAACCGCTGTATCCTCAGTCACGGCAGTCATCGTGCTGCTG
CTGCTGTCGCTGCTGTCGTCGCCGCCGGCGACGTGCCGCAGATTGTTGCG
TTGCGTTTTTGCGATAATGGCGTCGTTTTCGATAAGCGTGATGTCGTACG
CCGGTTTGATGCGTGGGGCGGGTTTTCTGTTGCTCTCATCTCCCCGTGCG
GTACGTTTGATGCGCATGCACTTTGCCCCCTCCCCGCCCCCCCCCCGCCC
CCCGGTTCGCCGGGTCGCCCTGTAGGATCGTCGCCAATCAGCCCGACGGT
ACTCTCCCTTCCGGGGAGCAGTACCACGATCGTCTCCAGCAGCTACTAGA
CGCCGTGTGGGAGTCGGAGCGACTCAAAACCGCGGGGAGGAAGAAGGCCA
GAACGAAAAGTAACGTAGCCGTCGATGTCGATGTCGGAGCGGCGAAGAAC
GGTGGTGCTGGGCCCACGGCGAAGCGCGACGACGGGGTTGGGTCTGACTC
GGGAGACTCGGGAGAGGACGGCGGCGAACCGGCACAGGGAGGCACCGGAG
TGGCTATACGTGGGGCCGGGGGCTCGGCGGCGGGAGAGGCCGCAGGGGGG
GTAGGAGAGGGCTTAGGCGTCAATACGGGGGGTGGTGAATGCGAGGGTGA
GCCGGCGGAGCCCGCCGCCGGTACCCCGGCGTATGTGAAGTGGTTGGCAC
AGCAAGCGGCCAAGCAAGCGTTACCACCCGTCCAAGGAGGTGACGGAGCC
GGCAGCAGCAATCTACGTACACGGCCGAAGCTCTGGATGCACCACCTCAC
GCTCGCCTTCTGCTTTTTCGGGAGGCCGGCTGGGGACAACGAGGACGTTG
ACCTCAGGGGTTGCAAGGAGGTCAGCGGACCCCCCGGGCGTAAAGGTCGG
AAGTCACGTGAGTGGTCGTCGGTATCCAGCAGCAGCAGCGGCAACTCCAC
GTCCAGCCCGGTCAACAAGTTGGGCCCCCAAGCCCTTCATCATCTCGTGG
GGGCGGGGGAAGCCCAAAGTCGAGCCAAGGTCAAGAAAGAGAAGGCAAGG
ATGGCCGCTGAACAGTCGAACCAGGGTCGGCACGAGGCGGTGTTGAAGCT
CATGCAGGAGCAGGCGAAAGTTTCAGGGAATGTTGCGGGCGCCGTGATGC
AAGTAGCCGCTGACACCCATGCCAAGCTCGCTCTGGACGAGGAGGACGCG
AGGCGCAAGCGCAAGAAAGAGACCATCGACAATCTAAAAGGCGAGCTCGA
GTTTGCCTCACCGGTGGAGAAGCAGCACATCACGACGAAGCTGAGGAGCA
TATTCCGGCTGTCACCGGACCTGTTCACCGCCGGCTTCGACGTGGAGGCG
CACTTGAATGGGCCACCTCTTACCGTCACCCCAGCGACTTCGGCGGCGAC
ACCCACCCAACCCGGGATGAACGGCGGGTCGGCGGGGGTGTTGCCGTAGG
GGGGCTCACACTATCGAGTTTAAAAATAAAACTGAACGTGAGGACTTGAG
CGTTTTCTACCCGCCTTCGTGGGGCAAGACTTTTCCCTCTAGTTGCCTTG
AGTTGTCTCGTCGGAGTTGTTGGGCTCATTTTGCTTCAGTTTTTGGGTTG
CAACCACTCATGTTGGTGTGTGTTTTGTTTCTTTCACTGGCGTCAGGTTG
TATGCCACGCCGTTTCGAGGGATGACGTTAACCCTCCTGTACATGACTCG
CCGCATTGTTTTAAAATTGTTTTCGGGTCGCATGGCTTTGGGCTCGGTGT
CTGATCTTCCTAGTTTCTGATACTGGCGGCTAGTAGGACAAATGCCACCC
CGTTTAATTACTGAAGTGCGCCATCGCCGGGATTTCCCGCACTTTGAAGC
TTATTGCGAAAAATCTTTGTTGCAAACAACACCAGCCTTTAACACACAAA
CAGCGCAACCCGAACCCGCGCTGTTTTGTGTGTTGGTGGTCAACGCCCAA
ATGCCGGGGAAAAAACGCACACGCGTGGGGAAAATAACCTGAGCACCCAA
ACCAAGAGTGCAGGT

Coding sequence (CDS) from alignment at P-fluviatile_contig81:116329..119993+

>mRNA_P-fluviatile_contig81.14767.1 ID=mRNA_P-fluviatile_contig81.14767.1|Name=mRNA_P-fluviatile_contig81.14767.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=3180bp|location=Sequence derived from alignment at P-fluviatile_contig81:116329..119993+ (Porterinema fluviatile SAG_2381)
ATGCCACCAGTCACCTCTCTTCTCTTGGACCATAACGAGATGGTCCAAGC
CGCACTCGACCACTTAGGGGAGATCCTCAAGGACAACCAGATTTCGGTGA
AGGACACGCTTCGTATCATCCAGGCGGTCGCAGTGACCTATGCTTGCCTT
GGGGTGAAGAAGAATGGCGGAGATACAAGCAAGAAGATAAAGGAGGAGGC
TGTAGCTGCCGGGTACAAGAATGTAGCCGCTCCAGGATTCTTGAAGTGGC
TGGAGGAGAAGGAGTTCGCCACGCCTACCTGGGTGGCAGCCAAAATGGGC
CAGAGCACCATGACCGATACCGATGCCACCAGTCACCTCTCTTCTCTTGG
ACCATAACGAGATGGTCCAAGCCGCACTCGACCACTTAGGGGAGATCCTC
AAGGACAACCAGATTTCGGTGAAGGACACGCTTCGTATCATCCAGGCGGT
CGCAGTGACCTATGCTTGCCTTGGGGTGAAGAAGAATGGCGGAGATACAA
GCAAGAAGATAAAGGAGGAGGCTGTAGCTGCCGGGTACAAGAATGTAGCC
GCTCCAGGATTCTTGAAGTGGCTGGAGGAGAAGGAGTTCGCCACGCCTAC
CTGGGTGGCAGCCAAAATGGGCCAGAGCACCATGACCGATACCGATGAGA
AATACTACAAAGACGGGTCGAGGCTGTACAAGAAGCACATGGATGACTTC
TGTATCCTGCGGCGGGACTGGGGCCCCATCTGGGACAAATGAGAAATACT
ACAAAGACGGGTCGAGGCTGTACAAGAAGCACATGGATGACTTCTGTATC
CTGCGGCGGGACTGGGGCCCCATCTGGGACAAGATCGTCGCCAATCAGCC
CGACGGTACTCTCCCTTCCGGGGAGCAGTACCACGATCGTCTCCAGCAGC
TACTAGACGCCGTGTGGGAGTCGGAGCGACTCAAAACCGCGGGGAGGAAG
AAGGCCAGAACGAAAAGTAACGTAGCCGTCGATGTCGATGTCGGAGCGGC
GAAGAACGGTGGTGCTGGGCCCACGGCGAAGCGCGACGACGGGGTTGGGT
CTGACTCGGGAGACTCGGGAGAGGACGGCGGCGAACCGGCACAGGGAGGC
ACCGGAGTGGCTATACGTGGGGCCGGGGGCTCGGCGGCGGGAGAGGCCGC
AGGGGGGGTAGGAGAGGGCTTAGGCGTCAATACGGGGGGTGGTGAATGCG
AGGGTGAGCCGGCGGAGCCCGCCGCCGGTACCCCGGCGTATGTGAAGTGG
TTGGCACAGCAAGCGGCCAAGCAAGCGTTACCACCCGTCCAAGGAGGTGA
CGGAGCCGGCAGCAGCAATCTACGTACACGGCCGAAGCTCTGGATGCACC
ACCTCACGCTCGCCTTCTGCTTTTTCGGGAGGCCGGCTGGGGACAACGAG
GACGTTGACCTCAGGGGTTGCAAGGAGGTCAGCGGACCCCCCGGGCGTAA
AGGTCGGAAGTCACGTGAGTGGTCGTCGGTATCCAGCAGCAGCAGCGGCA
ACTCCACGTCCAGCCCGGTCAACAAGTTGGGCCCCCAAGCCCTTCATCAT
CTCGTGGGGGCGGGGGAAGCCCAAAGTCGAGCCAAGGTCAAGAAAGAGAA
GGCAAGGATGGCCGCTGAACAGTCGAACCAGGGTCGGCACGAGGCGGTGT
TGAAGCTCATGCAGGAGCAGGCGAAAGTTTCAGGGAATGTTGCGGGCGCC
GTGATGCAAGTAGCCGCTGACACCCATGCCAAGCTCGCTCTGGACGAGGA
GGACGCGAGGCGCAAGCGCAAGAAAGAGACCATCGACAATCTAAAAGGCG
AGCTCGAGTTTGCCTCACCGGTGGAGAAGCAGCACATCACGACGAAGCTG
AGGAGCATATTCCGGCTGTCACCGGACCTGTTCACCGCCGGCTTCGACGT
GGAGGCGCACTTGAATGGGCCACCTCTTACCGTCACCCCAGCGACTTCGG
CGGCGACACCCACCCAACCCGGGATGAACGGCGGGTCGGCGGGGGTGTTG
CCGTAGGATCGTCGCCAATCAGCCCGACGGTACTCTCCCTTCCGGGGAGC
AGTACCACGATCGTCTCCAGCAGCTACTAGACGCCGTGTGGGAGTCGGAG
CGACTCAAAACCGCGGGGAGGAAGAAGGCCAGAACGAAAAGTAACGTAGC
CGTCGATGTCGATGTCGGAGCGGCGAAGAACGGTGGTGCTGGGCCCACGG
CGAAGCGCGACGACGGGGTTGGGTCTGACTCGGGAGACTCGGGAGAGGAC
GGCGGCGAACCGGCACAGGGAGGCACCGGAGTGGCTATACGTGGGGCCGG
GGGCTCGGCGGCGGGAGAGGCCGCAGGGGGGGTAGGAGAGGGCTTAGGCG
TCAATACGGGGGGTGGTGAATGCGAGGGTGAGCCGGCGGAGCCCGCCGCC
GGTACCCCGGCGTATGTGAAGTGGTTGGCACAGCAAGCGGCCAAGCAAGC
GTTACCACCCGTCCAAGGAGGTGACGGAGCCGGCAGCAGCAATCTACGTA
CACGGCCGAAGCTCTGGATGCACCACCTCACGCTCGCCTTCTGCTTTTTC
GGGAGGCCGGCTGGGGACAACGAGGACGTTGACCTCAGGGGTTGCAAGGA
GGTCAGCGGACCCCCCGGGCGTAAAGGTCGGAAGTCACGTGAGTGGTCGT
CGGTATCCAGCAGCAGCAGCGGCAACTCCACGTCCAGCCCGGTCAACAAG
TTGGGCCCCCAAGCCCTTCATCATCTCGTGGGGGCGGGGGAAGCCCAAAG
TCGAGCCAAGGTCAAGAAAGAGAAGGCAAGGATGGCCGCTGAACAGTCGA
ACCAGGGTCGGCACGAGGCGGTGTTGAAGCTCATGCAGGAGCAGGCGAAA
GTTTCAGGGAATGTTGCGGGCGCCGTGATGCAAGTAGCCGCTGACACCCA
TGCCAAGCTCGCTCTGGACGAGGAGGACGCGAGGCGCAAGCGCAAGAAAG
AGACCATCGACAATCTAAAAGGCGAGCTCGAGTTTGCCTCACCGGTGGAG
AAGCAGCACATCACGACGAAGCTGAGGAGCATATTCCGGCTGTCACCGGA
CCTGTTCACCGCCGGCTTCGACGTGGAGGCGCACTTGAATGGGCCACCTC
TTACCGTCACCCCAGCGACTTCGGCGGCGACACCCACCCAACCCGGGATG
AACGGCGGGTCGGCGGGGGTGTTGCCGTAG