mRNA_P-fluviatile_contig81.14765.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig81.14765.1
Unique NamemRNA_P-fluviatile_contig81.14765.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig81.14765.1 vs. uniprot
Match: D7FRU7_ECTSI (Kinesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRU7_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 6.170e-17
Identity = 65/128 (50.78%), Postives = 76/128 (59.38%), Query Frame = 1 
Query:    1 TIMEQKVQVLVDNVADSANAVLNFVTASENDNXXXXXXXXXXXGRGGRFGSSGR-----PWGAGLPSSXXXXXXXXXXQVPEEEKRSSTGPEARDAAGRALSKDVGQLRRLVQAAIAALRNAEIEDEQ 369
            TIMEQKVQVLVDNVADSA AVL+ V AS++             G  G  GS+       P  +  P+           +V      SS+ P AR+AAGRALSKDVGQLRRLVQAAI ALRNA+ ED+Q
Sbjct:  419 TIMEQKVQVLVDNVADSACAVLDLVAASQS-------GIDNRRGGDGHTGSTDHAQVVLPSPSSAPAGGTGSTGEG--EVSRAGTESSSSPAAREAAGRALSKDVGQLRRLVQAAITALRNADAEDQQ 537
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BLAST of mRNA_P-fluviatile_contig81.14765.1 vs. uniprot
Match: A0A6H5J9W7_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W7_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.350e-16
Identity = 67/130 (51.54%), Postives = 76/130 (58.46%), Query Frame = 1 
Query:    1 TIMEQKVQVLVDNVADSANAVLNFVTASEN--DNXXXXXXXXXXXGRGGRFGSSGRPWGAGLPSSXXXXXXXXXXQVPEEEKR----SSTGPEARDAAGRALSKDVGQLRRLVQAAIAALRNAEIEDEQR 372
            TIMEQKV+VLVDNVADSA AVL+ V AS++  DN             G  +  S       LPS               E  R    SS+ P AR+AAGRALSKDVGQLRRLVQAAI ALRNA+ ED+QR
Sbjct: 1385 TIMEQKVKVLVDNVADSACAVLDLVAASQSGADNHRA----------GDGYSGSTDHAQVVLPSPSLAPAGGTESAAEGEVSRAGTESSSSPAAREAAGRALSKDVGQLRRLVQAAITALRNADAEDQQR 1504
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig81.14765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRU7_ECTSI6.170e-1750.78Kinesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5J9W7_9PHAE2.350e-1651.54Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig81contigP-fluviatile_contig81:44513..44884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size372
Cds size366
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817274.802693-UTR-P-fluviatile_contig81:44512..445181622817274.802693-UTR-P-fluviatile_contig81:44512..44518Porterinema fluviatile SAG_2381UTRP-fluviatile_contig81 44513..44518 +
1693571876.9100063-UTR-P-fluviatile_contig81:44512..445181693571876.9100063-UTR-P-fluviatile_contig81:44512..44518Porterinema fluviatile SAG_2381UTRP-fluviatile_contig81 44513..44518 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817274.8137827-CDS-P-fluviatile_contig81:44518..448841622817274.8137827-CDS-P-fluviatile_contig81:44518..44884Porterinema fluviatile SAG_2381CDSP-fluviatile_contig81 44519..44884 +
1693571876.927132-CDS-P-fluviatile_contig81:44518..448841693571876.927132-CDS-P-fluviatile_contig81:44518..44884Porterinema fluviatile SAG_2381CDSP-fluviatile_contig81 44519..44884 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig81.14765.1prot_P-fluviatile_contig81.14765.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig81 44519..44884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig81.14765.1

>prot_P-fluviatile_contig81.14765.1 ID=prot_P-fluviatile_contig81.14765.1|Name=mRNA_P-fluviatile_contig81.14765.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=122bp
MEQKVQVLVDNVADSANAVLNFVTASENDNNNNNNNNNNSDGRGGRFGSS
GRPWGAGLPSSSSSGGTSSATQVPEEEKRSSTGPEARDAAGRALSKDVGQ
LRRLVQAAIAALRNAEIEDEQR
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mRNA from alignment at P-fluviatile_contig81:44513..44884+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig81.14765.1 ID=mRNA_P-fluviatile_contig81.14765.1|Name=mRNA_P-fluviatile_contig81.14765.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=372bp|location=Sequence derived from alignment at P-fluviatile_contig81:44513..44884+ (Porterinema fluviatile SAG_2381)
ACGATCATGGAGCAAAAGGTCCAGGTTCTCGTCGACAACGTGGCGGATTC
CGCAAATGCAGTCCTCAATTTCGTGACCGCCTCGGAAAATGACAACAACA
ACAACAACAACAACAACAACAACAGTGACGGCCGCGGAGGCCGTTTCGGA
AGCTCCGGTCGGCCGTGGGGAGCGGGGTTGCCGTCGTCAAGCTCGTCAGG
AGGCACGTCATCAGCGACTCAGGTGCCGGAAGAGGAGAAGAGGTCGTCCA
CCGGCCCGGAAGCTAGAGACGCAGCCGGCAGGGCACTGAGCAAAGACGTC
GGCCAGCTGAGAAGACTCGTGCAGGCCGCCATCGCCGCGCTTCGGAACGC
CGAGATCGAGGACGAGCAGCGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig81:44513..44884+

>mRNA_P-fluviatile_contig81.14765.1 ID=mRNA_P-fluviatile_contig81.14765.1|Name=mRNA_P-fluviatile_contig81.14765.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=732bp|location=Sequence derived from alignment at P-fluviatile_contig81:44513..44884+ (Porterinema fluviatile SAG_2381)
ATGGAGCAAAAGGTCCAGGTTCTCGTCGACAACGTGGCGGATTCCGCAAA
TGCAGTCCTCAATTTCGTGACCGCCTCGGAAAATGACAACAACAACAACA
ACAACAACAACAACAACAGTGACGGCCGCGGAGGCCGTTTCGGAAGCTCC
GGTCGGCCGTGGGGAGCGGGGTTGCCGTCGTCAAGCTCGTCAGGAGGCAC
GTCATCAGCGACTCAGGTGCCGGAAGAGGAGAAGAGGTCGTCCACCGGCC
CGGAAGCTAGAGACGCAGCCGGCAGGGCACTGAGCAAAGACGTCGGCCAG
CTGAGAAGACTCGTGCAGGCCGCCATCGCCGCGCTTCGGAACGCCGAGAT
CGAGGACGAGCAGCGAATGGAGCAAAAGGTCCAGGTTCTCGTCGACAACG
TGGCGGATTCCGCAAATGCAGTCCTCAATTTCGTGACCGCCTCGGAAAAT
GACAACAACAACAACAACAACAACAACAACAACAGTGACGGCCGCGGAGG
CCGTTTCGGAAGCTCCGGTCGGCCGTGGGGAGCGGGGTTGCCGTCGTCAA
GCTCGTCAGGAGGCACGTCATCAGCGACTCAGGTGCCGGAAGAGGAGAAG
AGGTCGTCCACCGGCCCGGAAGCTAGAGACGCAGCCGGCAGGGCACTGAG
CAAAGACGTCGGCCAGCTGAGAAGACTCGTGCAGGCCGCCATCGCCGCGC
TTCGGAACGCCGAGATCGAGGACGAGCAGCGA
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